mRNA_H-elongata_contig64382.14026.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A6H5KB68_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KB68_9PHAE) HSP 1 Score: 255 bits (651), Expect = 2.310e-81 Identity = 120/133 (90.23%), Postives = 127/133 (95.49%), Query Frame = 1
Query: 1 QAAAQREIAAAGGHESVDATTGAAVGHVTNFLSLRLDRPLQGCQLRPRVYVYSKLVTTNGVANKAYSNTDHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGTRIQCVPCHKLRVPRHRSVFCNVT 399
QAAAQREIAAA G +VDA+TG AVGHV+N+LSLRLDRPL+GCQLRPRVYVYSKL+TT GVANKAYSNTDHRF YTWSRGPERQVCANASCPRANSFSPLEWSKWAL+GTRIQCVPCHKLRVPRHRSVFCNVT
Sbjct: 26 QAAAQREIAAAAGAGAVDASTGMAVGHVSNYLSLRLDRPLEGCQLRPRVYVYSKLMTTTGVANKAYSNTDHRFQYTWSRGPERQVCANASCPRANSFSPLEWSKWALQGTRIQCVPCHKLRVPRHRSVFCNVT 158
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A835Z3I4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I4_9STRA) HSP 1 Score: 131 bits (330), Expect = 5.070e-33 Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1
Query: 142 RVYVYSKLVTTNGVANKAYSNTDHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGTRIQCVPCHKLRVPRHRSVFCN 393
R YVYS T+ G+ANKAYS +DH F + W RGPERQ CANA CPRA SFSPLEWS +AL+G RIQC+ C +L+VPRH+S+FCN
Sbjct: 11 RAYVYSTQRTSTGLANKAYSQSDHTFEFKWYRGPERQACANALCPRAASFSPLEWSTYALQGCRIQCIICSRLKVPRHKSIFCN 94
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A6S9ETF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ETF7_HETAK) HSP 1 Score: 117 bits (293), Expect = 5.200e-28 Identity = 59/126 (46.83%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 94 LSLRLDRPLQGCQLRPRVYVYSK------------LVTTNGVANKAYSNTD--------------HRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGTRIQCVPCHKLRVPRHRSVFCN 393
LSLRL+RP++ C+L+PR Y++ K V T+G ++ YS+T H F Y W RGPERQVCAN +CPRA SFSP++WSK A G R+QCV C KL++PRH S+FC
Sbjct: 18 LSLRLERPIEACELQPRAYLFIKGVGAALNNRGGNQVATSGGSDN-YSSTQKAAMAAAGFSLNEPHYFNYKWLRGPERQVCANPTCPRARSFSPVDWSKRARSGHRLQCVCCMKLKLPRHTSIFCT 142
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: W7UA28_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA28_9STRA) HSP 1 Score: 114 bits (284), Expect = 9.120e-27 Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 91 FLSLRLDRPLQGCQLRPRVYVYSKLVTTNGVANKAYSNTDHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGTR--IQCVPCHKLRVPRHRSVFCNV 396
L++RLDRP++GC + P Y+Y K G + + Y W RGPER VCAN +CPRA SF+P++WSK+A +G IQCV C KLR+PRH SVFC +
Sbjct: 21 MLNVRLDRPVEGCLISPHAYLYQK-----GEKGQQRDKERFNYRYRWLRGPERPVCANTACPRAQSFNPIQWSKFARKGCSFLIQCVVCAKLRLPRHHSVFCTL 119
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A7S2PG38_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG38_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.320e-19 Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 85 TNFLSLRLDRPLQGCQLRPRVYVYSKLV---TTNGVANKAYSNT--DHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGT-RIQCVPCHKLRVPRHRSVFCN 393
T LSLR+DRP++GC LRP Y+YSK + + +G +K H F Y W RGP+++ CA CPR SFSP +WSK+ALRG +QCV + +R+ FCN
Sbjct: 11 TWHLSLRVDRPVEGCTLRPHAYMYSKKIDEKSRDGPESKMMRTVIPPHDFHYRWLRGPKQEPCAYMKCPRRTSFSPHDWSKFALRGGYSLQCV---SQQSSLYRATFCN 116
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: K0SZX4_THAOC (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZX4_THAOC) HSP 1 Score: 90.5 bits (223), Expect = 1.570e-18 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 94 LSLRLDRPLQGCQLRPRVYVYSK-LVTTNGVANKAYSNT------DHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGTRIQCVPCHKLRVPRHRSVFCN 393
LSLR+DRP++GC LRP Y+Y K L N A+S +H F Y W +GP CA CPR +SFSP +WS ++L GT + + C + +R+ FCN
Sbjct: 12 LSLRVDRPVEGCTLRPHAYMYGKKLDDREANGNHAHSKICREPPPNHEFSYRWFKGPPVDPCAYDECPRRSSFSPHDWSTYSLGGTGVLSLQCISSQSSLYRATFCN 118
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A7S0AGF7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AGF7_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 5.470e-18 Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 94 LSLRLDRPLQGCQLRPRVYVYSKLVTTNGVA----NKAYSNTD--HRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGTR--IQCVPCHKLRVPRHRSVFCN 393
LSLR+DRP++GC +RP Y+Y K + +K + N H F Y W RGP+ + CA CPR SFSP +WS++AL GT +QCV R +++ FCN
Sbjct: 12 LSLRVDRPVEGCTMRPHAYMYGKKLDEREANLPSHSKRFPNPPPLHEFSYRWYRGPKVEPCAFEGCPRRTSFSPHDWSQFALGGTGCGLQCV---SNRSSLYKATFCN 116
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A7R9ZDF3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9ZDF3_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.890e-17 Identity = 45/113 (39.82%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 85 TNFLSLRLDRPLQGCQLRPRVYVYSKLVTTNGVANKAYSNTD--------HRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGT--RIQCVPCHKLRVPRHRSVFCN 393
T LSLR DRP++GC +RP Y+Y K + ++ H F Y W RGP + CA + CPR SFSP +WS AL G+ +QCV R +RS FCN
Sbjct: 18 TWHLSLRADRPVEGCAVRPHAYMYGKKLDEREYDRPVPPHSKKCAGPPPAHEFSYRWYRGPPSEPCAFSGCPRRTSFSPHDWSIHALGGSGCSLQCVSA---RSSLYRSTFCN 127
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A7S2Y517_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y517_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 4.860e-17 Identity = 45/111 (40.54%), Postives = 58/111 (52.25%), Query Frame = 1
Query: 94 LSLRLDRPLQGCQLRPRVYVYSKLVTTNGVANKAYSN---------TDHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGT--RIQCVPCHKLRVPRHRSVFCN 393
LSLR+DRP++GC +RP Y+Y K + KA H F Y W RGP + CA +CPR +SFSP +WSK AL GT +QCV ++ FCN
Sbjct: 12 LSLRVDRPVEGCAIRPHSYMYGKKLDEREYHEKASQPHTKVMKEPPPSHEFSYRWFRGPLHEACAYEACPRRSSFSPHDWSKHALGGTDCTLQCVSTQS---SLYKCTFCN 119
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Match: A0A6V2A2F9_9STRA (Hypothetical protein n=5 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2A2F9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 6.610e-17 Identity = 44/113 (38.94%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 85 TNFLSLRLDRPLQGCQLRPRVYVYSKLVTTNGVANKAYSNT--------DHRFLYTWSRGPERQVCANASCPRANSFSPLEWSKWALRGT--RIQCVPCHKLRVPRHRSVFCN 393
T LSLR+DRP++GC +RP Y+Y K + + +T +H F Y W RGP + CA CPR SFSP +WSK AL G+ +QC+ +S FCN
Sbjct: 12 TWHLSLRVDRPVEGCNMRPHAYMYGKKLDERDLDKPLPPHTKMSREPPPNHEFSYRWFRGPHLEPCAYEGCPRRTSFSPHDWSKHALGGSGCSLQCISTQS---SLFKSTFCN 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64382.14026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64382.14026.1 >prot_H-elongata_contig64382.14026.1 ID=prot_H-elongata_contig64382.14026.1|Name=mRNA_H-elongata_contig64382.14026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp QAAAQREIAAAGGHESVDATTGAAVGHVTNFLSLRLDRPLQGCQLRPRVYback to top mRNA from alignment at H-elongata_contig64382:104..2443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64382.14026.1 ID=mRNA_H-elongata_contig64382.14026.1|Name=mRNA_H-elongata_contig64382.14026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2340bp|location=Sequence derived from alignment at H-elongata_contig64382:104..2443- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64382:104..2443- >mRNA_H-elongata_contig64382.14026.1 ID=mRNA_H-elongata_contig64382.14026.1|Name=mRNA_H-elongata_contig64382.14026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig64382:104..2443- (Himanthalia elongata Himel1 dioecious)back to top |