mRNA_H-elongata_contig64310.14021.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64310.14021.1
Unique NamemRNA_H-elongata_contig64310.14021.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64310.14021.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.850e-67
Identity = 103/171 (60.23%), Postives = 127/171 (74.27%), Query Frame = 1 
Query:    1 QPPLQYYLYAMKAKEWDHVTIVTAAWKNATINPTFTALEVMESTGMLGPNVRLFRNRSLLTDVRAMLCADGLAFSRSSLSLMIFPHTRARFFFVPAVCGNGLFRIMKKSP-KAFVDNTTLLFLEKPDAEIHGIRWREDAPEYTVFNKWRDDPEQLLEIVEYGGIETLERCS 510
            QPPLQYYL+ +  K+WD+VT +TAAW    INPTF+ LEVM   G LG NVRL +NRSLL DVR MLCAD LA SRSS+S + F H+RA  FFVP  CGNG FR M++ P KA  DNTTLL LEKPDAE++G  W  ++P+Y+V+  W D PEQLLE+  +GGIE +++CS
Sbjct:  277 QPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLGDNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMRRPPVKATFDNTTLLLLEKPDAEVYGTAWPGNSPKYSVYQAWHDTPEQLLEMATFGGIEGVQKCS 447
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BLAST of mRNA_H-elongata_contig64310.14021.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.130e-63
Identity = 96/171 (56.14%), Postives = 125/171 (73.10%), Query Frame = 1 
Query:    1 QPPLQYYLYAMKAKEWDHVTIVTAAWKNATINPTFTALEVMESTGMLGPNVRLFRNRSLLTDVRAMLCADGLAFSRSSLSLMIFPHTRARFFFVPAVCGNGLFRIMKKSP-KAFVDNTTLLFLEKPDAEIHGIRWREDAPEYTVFNKWRDDPEQLLEIVEYGGIETLERCS 510
            QPPLQYYL  + AK+WD+VT +TAAW++  +NPTF  LE+M   G+LG NV LF NR+LLTD++ MLCAD LA SRSS+S + F H+RA  FFVP  CGNG FR MK  P KA  DNTTLL LEK ++E+ G+ WR++  +Y+V+  W D P QLLE+  Y GI+ L++C+
Sbjct:  141 QPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGENVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMKDVPVKATFDNTTLLLLEKRESEVFGVDWRQNGSDYSVYKNWLDSPHQLLEMTTYKGIKGLQKCT 311
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BLAST of mRNA_H-elongata_contig64310.14021.1 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.040e-27
Identity = 59/169 (34.91%), Postives = 105/169 (62.13%), Query Frame = 1 
Query:    1 QPPLQYYLYAMKAKEWDHVTIVTAAWKNATINPTFTALEVMESTGMLGPNVRLFRNRSLLTDVRAMLCADGLAFSRSSLSLMIFPHTRARFFFVPAVCGNGLFRIMKKSPKAFVDNTTLLFLEKPDAEIHGIRWREDAPEYTVFNKWRDDPEQLLEIVEYGGIETLERC 507
            QPPL Y+L  + +K+WD+++++T+   +  +NPT++ +  +   G LG NV + ++RS   D++AMLCAD LA S S+LS ++  H+RA+ FF+P  C    + +       FV N +++ L++P  E++GI WR  +  YTV++ W D    ++E+V    ++ ++RC
Sbjct:  271 QPPLGYFLAVIASKKWDYLSVLTSG-PDKQLNPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNR---FV-NASMICLQRP--EVYGIDWRTTSDAYTVYDSW-DPNSNMMEMVVSDAVKGVQRC 431
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BLAST of mRNA_H-elongata_contig64310.14021.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 8.010e-17
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:    1 QPPLQYYLYAMKAKEWDHVTIVT--AAWKNATINPTFTALEVMESTGMLGPNVRLFRNRSLLTDVRAMLCADG-LAFSRSSLSLMIFPHTRARFFFVPAVCGNGLFRIMKKSPKAFVDNTTLLFLEKPDAEIHGIRWREDAPEYTVFNKWRDDPEQLLEIVEYGGIETLERCS 510
            QPPLQYY+ A+K ++WD V IVT     K   +NP   ALEVM + G L  N+   ++R++  D  +M+C  G L  +RSSLSL++  H+ A   + P  C   L    + SP A +++   L  E    +++G++       Y++   W +  +Q+ E++ +  + + E+C 
Sbjct:  339 QPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTGNIYFHKDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPCAGSLEFYTRGSPDASLND---LDDELQAVKVYGVK-PPGMERYSLDVSWNNTADQVNEMLTFN-VSSFEQCG 506
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64310.14021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRV9_ECTSI5.850e-6760.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRV8_ECTSI1.130e-6356.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNM4_9PHAE1.040e-2734.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2M2_ECTSI8.010e-1731.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64310contigH-elongata_contig64310:840..3170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size513
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64310.14021.1prot_H-elongata_contig64310.14021.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64310 840..3140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.1593099-CDS-H-elongata_contig64310:839..9681622931029.1593099-CDS-H-elongata_contig64310:839..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64310 840..968 -
1691679668.3605297-CDS-H-elongata_contig64310:839..9681691679668.3605297-CDS-H-elongata_contig64310:839..968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64310 840..968 -
1622931029.184562-CDS-H-elongata_contig64310:2553..27721622931029.184562-CDS-H-elongata_contig64310:2553..2772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64310 2554..2772 -
1691679668.3693774-CDS-H-elongata_contig64310:2553..27721691679668.3693774-CDS-H-elongata_contig64310:2553..2772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64310 2554..2772 -
1622931029.214263-CDS-H-elongata_contig64310:3005..31401622931029.214263-CDS-H-elongata_contig64310:3005..3140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64310 3006..3140 -
1691679668.3785148-CDS-H-elongata_contig64310:3005..31401691679668.3785148-CDS-H-elongata_contig64310:3005..3140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64310 3006..3140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.2339597-UTR-H-elongata_contig64310:3140..31701622931029.2339597-UTR-H-elongata_contig64310:3140..3170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64310 3141..3170 -
1691679668.3919692-UTR-H-elongata_contig64310:3140..31701691679668.3919692-UTR-H-elongata_contig64310:3140..3170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64310 3141..3170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64310.14021.1

>prot_H-elongata_contig64310.14021.1 ID=prot_H-elongata_contig64310.14021.1|Name=mRNA_H-elongata_contig64310.14021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MKAKEWDHVTIVTAAWKNATINPTFTALEVMESTGMLGPNVRLFRNRSLL
TDVRAMLCADGLAFSRSSLSLMIFPHTRARFFFVPAVCGNGLFRIMKKSP
KAFVDNTTLLFLEKPDAEIHGIRWREDAPEYTVFNKWRDDPEQLLEIVEY
GGIETLERCS*
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mRNA from alignment at H-elongata_contig64310:840..3170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64310.14021.1 ID=mRNA_H-elongata_contig64310.14021.1|Name=mRNA_H-elongata_contig64310.14021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2331bp|location=Sequence derived from alignment at H-elongata_contig64310:840..3170- (Himanthalia elongata Himel1 dioecious)
CAGCCTCCTCTTCAGTACTACTTGTACGCAATGAAGGCGAAAGAGTGGGA
TCACGTAACAATAGTTACCGCGGCGTGGAAAAATGCGACTATCAACCCCA
CGTTCACTGCGCTGGAGGTCATGGAGTCCACCGGGATGTTGGGGCCGAAC
GTTCGGCTGTTCAGGGTGCGCGCAGCAAGGCATACATATTCACAGCAGCA
CGCCATGTCACATTCGAATGTCTGAGAGTTGGGCGCGGGAGTGCATTTTC
TCTTTTGGTGTCGCCTTCTCTTTCAACTTTTTTTTATTTTGTGATCTCTT
ATTTTTTGGCTCATCGTGGCCTGTGGCGTGTGTTCTCTCGCCGTCTTGGT
GTTTCGTGATCTCTCTCCCCACCTTGCTCCCACCCTGCATGGCCGAAGAA
CCGCTCGCTACTGACGGACGTGCGGGCGATGCTCTGCGCGGACGGGCTAG
CGTTCTCGAGGTCGAGCCTGAGCTTGATGATATTTCCCCACACGAGGGCG
AGGTTTTTCTTCGTCCCCGCCGTGTGCGGCAACGGCTTGTTCCGGATAAT
GAAAAAATCTCCCAAGGCATTCGTCGACAACACCACGCTGCTCTTTCTTG
AGAAACCAGACGCCGAGGTGAGCGAGGAGCTAATTTTTTTATGATCCAAC
CATCGCGAGGTGTGAGGAGGAAGGTGGGTGCGGTGGGTACTTGTGTTAAA
CGCATGTGGTATCCTGATGGACATAGACCATGCATCCAAAAAATGCCGAG
ACGGAGCGATATGCCACGCCGGGTTTTCACCGGCGGGCTGCGTTTCACAA
GGATTATACCACCTTTTAGTCATCCTCCTTGCGTTTGTTAAACCAAACCG
GATATGCCATGGTTTAGTTGGACACTGGATACTGGACATGACATACTTGA
GTAACTAAAGGCTGTACGTTCAGCGGGCGTTATCGACTTTAATCTATAGT
GCCCTCAACGGAGTTTTGATCTCCGCGCGAAGGCTTAAGCGAAGCACGCG
CACTGCATGTATGGCAATATATGTTTGATACACTCCGACTATAATCTGCT
CGTGAATACTCGTGGCGGAGTACTCTAATAGTTAGTCAATGGTTGCTTTA
GGGTTTTCCAACAATCCATTTTTTAACAGGCATCCTATATAATGTGATGC
GGATGCGCTTCATCCCTTTTGAGGATAAACAAGAGTCCTTGAACGAGGTC
TCTCAGCTAATATGACAGGACAGACATACCCTGCATGAACAGTGCGCGGG
AGAATTTGGCGACAAGTCTGCTATCCCCGACTTCAGGGGGTGGGGGGGTT
ACAAAACAGTCCCTTCCTGGAATATGGGTTATCCAGCCCCTTGTATGATA
AAGGCTAATAACAGTATGCCTCGAACATTGTTAATTTCATCATATAATTA
TCCGGTGAGGGGATGTGTCTTGATACCGCCCGCCCGCCCCTCATCGTTGA
AACACTATTGCATAATAACCGACGGGGATGCGCCGATGGCCTTTTCTCAT
ACTTTTGAAGCATGGGAAAGCCACGGGCAAATGTTGTAGCTATACTGGGG
GATAAGACGTGGCCTGAGAAGGCGAAAATGGATGTATATGCGATAGGAAA
ACCATTTTTGCGGTCATCTTTGACAGCAAAGTAGGAAAGAACGAACGATT
TGATTGGCCATCGGTGACCGATCATGTAGGAAGGAACAATGCTCCGTCCT
ATTACCCCTCCCTCCCTCCCGAGTACATAAGGCGGTCTAACACCCAAGGC
TTACAAAACGTTACGCCCCATCTTCGCCCCCTCCCGGAAGTACGTGCGGT
GTAAGAACCGTATCTTCACCCCTTTTATCTCTCGACCAGCATCAGACGTT
TGATCCATCATATTTCCATTATAGATCATTTTCTCTACCGCGCGGGGTGT
TGAAGATAACGCGACAGTCTCGGAAGACTGAAGAATTTGGCAAAAGTTAT
AACGGCGGAGCCATTGGTGGACCGCTCGTTAGTCTACGTAAAAACACGTG
CAGGCGTGAACGCCGATGCGCCTGAAACCAATCATTCGAGCGCGTATTTG
CAATCCGTACATAAATATACTATATACTGAATCCTGCAAGGCGAGCGCGT
ACCGAATTTCAACTTGGCGTTAACTCCGACCCCATATTCATATAGGTTTG
GCGGGGGGCGGGGGCGATGGTACCAACGCACGTCTGATTTTTCATTTTTC
AGATCCACGGAATTCGATGGCGAGAGGACGCCCCCGAATACACGGTGTTC
AATAAATGGAGAGATGACCCGGAGCAGCTGCTGGAGATAGTCGAGTACGG
TGGTATCGAGACCCTCGAGAGGTGCTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig64310:840..3170-

>mRNA_H-elongata_contig64310.14021.1 ID=mRNA_H-elongata_contig64310.14021.1|Name=mRNA_H-elongata_contig64310.14021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig64310:840..3170- (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGAAAGAGTGGGATCACGTAACAATAGTTACCGCGGCGTGGAA
AAATGCGACTATCAACCCCACGTTCACTGCGCTGGAGGTCATGGAGTCCA
CCGGGATGTTGGGGCCGAACGTTCGGCTGTTCAGGATGAAGGCGAAAGAG
TGGGATCACGTAACAATAGTTACCGCGGCGTGGAAAAATGCGACTATCAA
CCCCACGTTCACTGCGCTGGAGGTCATGGAGTCCACCGGGATGTTGGGGC
CGAACGTTCGGCTGTTCAGGAACCGCTCGCTACTGACGGACGTGCGGGCG
ATGCTCTGCGCGGACGGGCTAGCGTTCTCGAGGTCGAGCCTGAGCTTGAT
GATATTTCCCCACACGAGGGCGAGGTTTTTCTTCGTCCCCGCCGTGTGCG
GCAACGGCTTGTTCCGGATAATGAAAAAATCTCCCAAGGCATTCGTCGAC
AACACCACGCTGCTCTTTCTTGAGAAACCAGACGCCGAGAACCGCTCGCT
ACTGACGGACGTGCGGGCGATGCTCTGCGCGGACGGGCTAGCGTTCTCGA
GGTCGAGCCTGAGCTTGATGATATTTCCCCACACGAGGGCGAGGTTTTTC
TTCGTCCCCGCCGTGTGCGGCAACGGCTTGTTCCGGATAATGAAAAAATC
TCCCAAGGCATTCGTCGACAACACCACGCTGCTCTTTCTTGAGAAACCAG
ACGCCGAGATCCACGGAATTCGATGGCGAGAGGACGCCCCCGAATACACG
GTGTTCAATAAATGGAGAGATGACCCGGAGCAGCTGCTGGAGATAGTCGA
GTACGGTGGTATCGAGACCCTCGAGAGGTGCTCATGAATCCACGGAATTC
GATGGCGAGAGGACGCCCCCGAATACACGGTGTTCAATAAATGGAGAGAT
GACCCGGAGCAGCTGCTGGAGATAGTCGAGTACGGTGGTATCGAGACCCT
CGAGAGGTGCTCATGA
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