mRNA_H-elongata_contig64284.14015.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64284.14015.1
Unique NamemRNA_H-elongata_contig64284.14015.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64284.14015.1 vs. uniprot
Match: A0A6H5KPQ4_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ4_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.700e-105
Identity = 141/185 (76.22%), Postives = 160/185 (86.49%), Query Frame = 1 
Query:    1 GVEIVEDRYEGAVTLHKAFKKAVVSENEFAERMHPDVVQDKVHLFK------WKHPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLEARLLHRLKNDPSNNGKVLITLEHIAEWQPDCWERRTYKYNCETKRAATYAANELEFWEYTVVSQWECPGCTSLNTDAVNDCMVCGTYCRNKRKSKRL 537
            G+EIVEDR+ GAV LH AF+KAV +E +    +HPDVV+ KVHLFK      W++PEVRDADFIFFNNSSGWFNNSKALNNPDEHSLE+RLL +LKNDP NNGK+L+TLEHIAEWQP CWERR+YKY+  T+RAATYAA ELEFWEYTVVSQWECPGCTS+N+DAVNDC+VCGTYC  KR SKRL
Sbjct:   37 GIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKGCFLEQWENPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLESRLLKKLKNDPRNNGKILVTLEHIAEWQPTCWERRSYKYSDNTRRAATYAAKELEFWEYTVVSQWECPGCTSINSDAVNDCVVCGTYCSGKRNSKRL 221
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BLAST of mRNA_H-elongata_contig64284.14015.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.480e-28
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:    1 GVEIVEDRYEGAVTLHKAFKKAVVSENEFAERMHPDVVQDKVHLFKWKHPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLEAR--LLHRLKNDPSNNGKVLITLEHIAEWQPDCWERRTYKYN 366
            G+EIVEDR+ GAV LH AF+KAV +E +    +HPDVV+ KVHLFK      +         +   F+++ A       S  AR  LL +LKNDP NNGK+L+TLEHIAEWQP CWERR+YKY+
Sbjct:  639 GIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKSPRAVSKARGRPPRLGTRTSFSSTIAAAG----STTARRWLLKKLKNDPRNNGKILVTLEHIAEWQPTCWERRSYKYS 758
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64284.14015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPQ4_9PHAE3.700e-10576.22RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FU81_ECTSI6.480e-2851.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64284contigH-elongata_contig64284:320..2944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size540
Cds size540
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64284.14015.1prot_H-elongata_contig64284.14015.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64284 320..2944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.5866404-CDS-H-elongata_contig64284:319..4571622931028.5866404-CDS-H-elongata_contig64284:319..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 320..457 +
1691679668.1579587-CDS-H-elongata_contig64284:319..4571691679668.1579587-CDS-H-elongata_contig64284:319..457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 320..457 +
1622931028.6038465-CDS-H-elongata_contig64284:743..8241622931028.6038465-CDS-H-elongata_contig64284:743..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 744..824 +
1691679668.1729448-CDS-H-elongata_contig64284:743..8241691679668.1729448-CDS-H-elongata_contig64284:743..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 744..824 +
1622931028.6228602-CDS-H-elongata_contig64284:1417..15661622931028.6228602-CDS-H-elongata_contig64284:1417..1566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 1418..1566 +
1691679668.1810138-CDS-H-elongata_contig64284:1417..15661691679668.1810138-CDS-H-elongata_contig64284:1417..1566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 1418..1566 +
1622931028.6411417-CDS-H-elongata_contig64284:2101..21591622931028.6411417-CDS-H-elongata_contig64284:2101..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 2102..2159 +
1691679668.188713-CDS-H-elongata_contig64284:2101..21591691679668.188713-CDS-H-elongata_contig64284:2101..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 2102..2159 +
1622931028.6538532-CDS-H-elongata_contig64284:2830..29441622931028.6538532-CDS-H-elongata_contig64284:2830..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 2831..2944 +
1691679668.1966124-CDS-H-elongata_contig64284:2830..29441691679668.1966124-CDS-H-elongata_contig64284:2830..2944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64284 2831..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64284.14015.1

>prot_H-elongata_contig64284.14015.1 ID=prot_H-elongata_contig64284.14015.1|Name=mRNA_H-elongata_contig64284.14015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
GVEIVEDRYEGAVTLHKAFKKAVVSENEFAERMHPDVVQDKVHLFKWKHP
EVRDADFIFFNNSSGWFNNSKALNNPDEHSLEARLLHRLKNDPSNNGKVL
ITLEHIAEWQPDCWERRTYKYNCETKRAATYAANELEFWEYTVVSQWECP
GCTSLNTDAVNDCMVCGTYCRNKRKSKRL*
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mRNA from alignment at H-elongata_contig64284:320..2944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64284.14015.1 ID=mRNA_H-elongata_contig64284.14015.1|Name=mRNA_H-elongata_contig64284.14015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2625bp|location=Sequence derived from alignment at H-elongata_contig64284:320..2944+ (Himanthalia elongata Himel1 dioecious)
GGGGTAGAGATCGTCGAGGACCGATACGAAGGCGCGGTGACTCTCCACAA
GGCTTTCAAGAAGGCAGTTGTTTCGGAGAACGAGTTCGCGGAACGCATGC
ACCCGGATGTTGTGCAGGACAAGGTCCACCTCTTCAAGGTTGGATAGGGT
TAATGGTTAGATTTGACTACAGTACCTACGCGATATTCAAGTAATAAAGA
GCTCAGCCTGCAGTGTTATATCTAGTATATTTATACTAATTAAAAAAAAA
TGTTTTAAAAATTGTCTCGCGTCTGGAAGACGTTTCACAACCTTTGGAGT
GTAACCCCCGCTCTCGTTGTCTCGAGCTGGGAGTTGCGCGGAAAGGGGAG
GCTTTTTTGCCCTTATATCCCTCCACCCTCTTCGCGTTGCGTTGATCCTT
GAGCAGGGCTGCTTCTTGGAACAGTGGAAACACCCGGAGGTCCGCGACGC
AGACTTCATTTTCTTTAACAACAGCAGTGGTTGGTTCAACAACAGCAAGG
CCTTGGTGAGCAAGGCAGATGGTATAGGGGTAGGGGCAGGGAGAAAAGAA
GGGGGGGTCGCCGACGACAAAAACTCGGTGGGTAGAACTCGGTAGGCTTT
AATAGATTTAAAAATGAGTAATCCTATGACTAGAGATGGAGGGTATCTGG
TTGGATGGGGACTCAGGAACGCGACACCCTAGAGCTATGCGAAGTCATAA
ACGTATTTTGGCGTTTACAGAGAGAAGGAGGACCATCTGAATTACCCCCC
CCCCAGTTGGAGCATTAGCCATTCCTTCGATTCCCTCCCCATGTACGTGT
TGTTGGTGTGTGGGTGTTTATGTGGGTGTTTTTCTGGTGGTATATAAGTT
CGACTATCCATGTCGGTCTGTCAATCGTTTGAAAAAATCTTGAGAGAGAG
AAGCTCCATGTCGTCAAGAGCTTCCCCTCGCCTCTCTGATTGCCCGGCAG
GCATACGCACTGCGAGATTTGCCCCGTGTTGCGTTGCGTCGCGTTGTGTC
AGATAATATTATCTTGTTTGCTCGTTAGCGGACGTGATCGTTGGCCGCTT
GTGGTTGTGTGTCTATCTATCCCCTCTCCCTCTCTACTCCACCCCCAGAA
CAACCCTGACGAGCACTCTCTAGAAGCGAGGCTGCTGCACCGCCTTAAAA
ATGACCCCAGCAACAATGGAAAAGTCCTTATTACGCTGGAGCACATCGCC
GAGTGGCAGCCCGACTGCTGGGAGAGACGCACCTACAAGTACAATTGGTG
AGTTAGGATTTTTAAGGTGGGGGTATTAGCTTCGTGTCCCCTATATACCA
AACCGCCCCCAGCGACCCTACTATAAAACACTTGTCGCTTTATTCTTTTT
TGGTTTCTTGAAGGAGGGCACACATACACGATCGGGGCGCATTTTTTATT
CTAGCGTTTGTGTGGCACGCGCCGCTCGATTGCCCGCCCTCTTGGAAAGA
TGAGGAGCTTGGACTGCGCCGTGCTTCGTTTCTACTTGTTGCGTGCTTCG
TCATGACGTATTTTGGTGTTAATCCCTCAGATAAAATATCCCCTGTCCCC
TGTCGCCGGAAATAATCGAATTCTGCACATCAAATCTGCTGCTGCTGCTG
TGTTAAGAGCGGTTTCACTGTTCTCTAGAGGTCTCACCTATGAGGGAATC
TTGAGTCCTTGGGCTTCAGCGCCGTAAAACAGAGCCCGAGCTTGTTTTCA
AGCACTCAGGCATCTTTGTGTTTATTACATCACGCACTATTCTTGCCTTT
TTTTGATGTTTGGCCGTTTTTTATTGCCATAGCGAAACCAAGAGAGCGGC
CACCTATGCTGCAAACGAGCTGGAGTTCTGGGAATACACCGTGAGTTGGA
CGCTTTTGAGTAGTCCTCGTGAGCTACTGACTCATAAAGAACGTCGTGTT
GATACTGACTTATAACGCACAACTGGGCCTTACTTAAGGCTATCGGTACG
ATGTTCGTACCGTTGACTTGAGCCGTTCGTCTATACGCGCTACGCCGTTC
CGAGAACATACGCGTGGTTTAACCCTTTTGGAACATGATTTCATTTTTTG
TATTGAATTTAGTATTTCCATAGGGGTGGCATGAAAAACTTTAGTACCTC
CTCGCCCCCTCCGCTCCTTTGGAATGTCTCTATTGCCGTGTCTAGGGCAT
GGAGGGGTGTGTATGCATGTAGTGTGCCCTGTGAGCTCAGAGACCGCAGC
CGAGGAGTTTTGTTTGTTGCTGAAGGGGCGAAACGCATTTTGACTGCCCG
TTTTAGCGTATCAAACGCGAGGACGGTAATGACTAAAAGCTCACATCATC
CTTGCAAAACCCAGTCTGTTCAGTAAAAGCCCGTCTCAGTAATGTTGGGA
TGTCTAGTATAGAAAACGTCATGTGTATAACAGAGGTAACCCCCCCCCCC
CCCCTTCCCCCCTTCCCCTGCCCCTTCCCTTTCCCCTTTCCCTTCTACCA
CGTCGACGTATGATGTGGTCAATCTCGGTTACCCTTTTATCCCCGATATC
TCCGAAGACAGGTGGTTAGCCAATGGGAGTGCCCCGGTTGCACCTCCCTA
AACACGGACGCGGTGAACGATTGCATGGTATGCGGCACCTATTGTCGAAA
CAAGCGGAAGTCCAAGCGGCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig64284:320..2944+

>mRNA_H-elongata_contig64284.14015.1 ID=mRNA_H-elongata_contig64284.14015.1|Name=mRNA_H-elongata_contig64284.14015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig64284:320..2944+ (Himanthalia elongata Himel1 dioecious)
GGGGTAGAGATCGTCGAGGACCGATACGAAGGCGCGGTGACTCTCCACAA
GGCTTTCAAGAAGGCAGTTGTTTCGGAGAACGAGTTCGCGGAACGCATGC
ACCCGGATGTTGTGCAGGACAAGGTCCACCTCTTCAAGGGGGTAGAGATC
GTCGAGGACCGATACGAAGGCGCGGTGACTCTCCACAAGGCTTTCAAGAA
GGCAGTTGTTTCGGAGAACGAGTTCGCGGAACGCATGCACCCGGATGTTG
TGCAGGACAAGGTCCACCTCTTCAAGTGGAAACACCCGGAGGTCCGCGAC
GCAGACTTCATTTTCTTTAACAACAGCAGTGGTTGGTTCAACAACAGCAA
GGCCTTGTGGAAACACCCGGAGGTCCGCGACGCAGACTTCATTTTCTTTA
ACAACAGCAGTGGTTGGTTCAACAACAGCAAGGCCTTGAACAACCCTGAC
GAGCACTCTCTAGAAGCGAGGCTGCTGCACCGCCTTAAAAATGACCCCAG
CAACAATGGAAAAGTCCTTATTACGCTGGAGCACATCGCCGAGTGGCAGC
CCGACTGCTGGGAGAGACGCACCTACAAGTACAATTGAACAACCCTGACG
AGCACTCTCTAGAAGCGAGGCTGCTGCACCGCCTTAAAAATGACCCCAGC
AACAATGGAAAAGTCCTTATTACGCTGGAGCACATCGCCGAGTGGCAGCC
CGACTGCTGGGAGAGACGCACCTACAAGTACAATTGCGAAACCAAGAGAG
CGGCCACCTATGCTGCAAACGAGCTGGAGTTCTGGGAATACACCCGAAAC
CAAGAGAGCGGCCACCTATGCTGCAAACGAGCTGGAGTTCTGGGAATACA
CCGTGGTTAGCCAATGGGAGTGCCCCGGTTGCACCTCCCTAAACACGGAC
GCGGTGAACGATTGCATGGTATGCGGCACCTATTGTCGAAACAAGCGGAA
GTCCAAGCGGCTCTAGGTGGTTAGCCAATGGGAGTGCCCCGGTTGCACCT
CCCTAAACACGGACGCGGTGAACGATTGCATGGTATGCGGCACCTATTGT
CGAAACAAGCGGAAGTCCAAGCGGCTCTAG
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