mRNA_H-elongata_contig64262.14013.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: B9S233_RICCO (HSF_DOMAIN domain-containing protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S233_RICCO) HSP 1 Score: 75.5 bits (184), Expect = 2.750e-16 Identity = 36/75 (48.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 1 MQLSPVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNH-GECKW 219
M+ + V PF+SK+Y +V++ ST+ +VSWSSSD ++F++ +VG FQ+++LP++F H N++SFVRQLN + G W
Sbjct: 1 MESNTVPPFLSKSYDMVDDPSTNSVVSWSSSD--NSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTYVGLVAW 73
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: UPI0007721EB2 (heat stress transcription factor A-1b isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI0007721EB2) HSP 1 Score: 77.4 bits (189), Expect = 6.830e-15 Identity = 35/70 (50.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query: 1 MQLSPVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
M+ + V PF+SK+Y +V++ ST+ +VSWSSSD ++F++ +VG FQ+++LP++F H N++SFVRQLN +G
Sbjct: 1 MESNTVPPFLSKSYDMVDDPSTNSVVSWSSSD--NSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTYG 68
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A0V0GSL0_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSL0_SOLCH) HSP 1 Score: 70.9 bits (172), Expect = 5.410e-14 Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 13 PVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHGECK 216
P+ PF+SK Y +V++ STD +VSWS S+ ++FV+ +V F +LP++F H N++SFVRQLN +G K
Sbjct: 6 PLPPFLSKTYDMVDDRSTDSVVSWSKSN--NSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKK 72
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: W9S462_9ROSA (HSF_DOMAIN domain-containing protein n=2 Tax=Morus notabilis TaxID=981085 RepID=W9S462_9ROSA) HSP 1 Score: 68.9 bits (167), Expect = 1.400e-13 Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 22 PFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHGECKWAK 225
PF+SK Y +V++ STD IVSWS D ++FV+ + +F +LP+FF H N++SFVRQLN +G + +K
Sbjct: 19 PFLSKTYDMVDDPSTDSIVSWS--DHNNSFVVWNAPLFARDLLPKFFKHNNFSSFVRQLNTYGRKELSK 85
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A2P2JGW8_RHIMU (HSF_DOMAIN domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JGW8_RHIMU) HSP 1 Score: 67.8 bits (164), Expect = 3.430e-13 Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 16 VAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLN 198
+APF+ K Y +V++ESTD I+ WS S +D+FVI+ + F Q+LP++F H N++SF+RQLN
Sbjct: 12 IAPFLKKCYEMVDDESTDSIICWSQS--KDSFVIRDMTEFSVQLLPKYFKHNNFSSFIRQLN 71
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A7C8YQ30_OPUST (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YQ30_OPUST) HSP 1 Score: 69.7 bits (169), Expect = 5.390e-13 Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 16 VAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
VAPF++K Y +V++ STD ++SW+ S+ D+FVI H+ F +LP+FF H+N++SF+RQLN +G
Sbjct: 22 VAPFLAKCYEMVDDPSTDCVISWNQSN--DSFVIWHMTEFSRDLLPKFFKHQNFSSFMRQLNIYG 84
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A2C9VA84_MANES (HSF_DOMAIN domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VA84_MANES) HSP 1 Score: 72.0 bits (175), Expect = 5.450e-13 Identity = 34/68 (50.00%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 7 LSPVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
++ V PF+SK Y +V++ ST+ +VSWSSSD ++FV+ +V FQ+ +LP++F H N++SFVRQLN +G
Sbjct: 6 MNSVPPFLSKTYDMVDDPSTNSVVSWSSSD--NSFVVWNVPEFQKDLLPKYFKHSNFSSFVRQLNTYG 71
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A0V0HBA1_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HBA1_SOLCH) HSP 1 Score: 70.9 bits (172), Expect = 6.480e-13 Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 13 PVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHGECK 216
P+ PF+SK Y +V++ STD +VSWS S+ ++FV+ +V F +LP++F H N++SFVRQLN +G K
Sbjct: 11 PLPPFLSKTYDMVDDRSTDSVVSWSKSN--NSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKK 77
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A6A6M427_HEVBR (HSF_DOMAIN domain-containing protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6M427_HEVBR) HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12 Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 16 VAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
V PF+SK Y +V++ ST+ +VSWSSSD ++FV+ +V FQ +LP++F H N++SFVRQLN +G
Sbjct: 9 VPPFLSKTYDMVDDPSTNSVVSWSSSD--NSFVVWNVPEFQRDLLPKYFKHNNFSSFVRQLNTYG 71
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: UPI00053CA2E0 (heat stress transcription factor A-1e-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA2E0) HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12 Identity = 32/68 (47.06%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 7 LSPVAPFVSKAYGIVNEEST-DIVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
++ V PF+SK Y +V++ ST ++VSWSS G ++FV+++V F +++LP++F H N++SFVRQLN +G
Sbjct: 16 VNSVPPFLSKTYDMVDDPSTNEVVSWSS--GNNSFVVRNVPEFTKELLPKYFKHNNFSSFVRQLNTYG 81 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64262.14013.1 >prot_H-elongata_contig64262.14013.1 ID=prot_H-elongata_contig64262.14013.1|Name=mRNA_H-elongata_contig64262.14013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp MQLSPVAPFVSKAYGIVNEESTDIVSWSSSDGEDTFVIKHVGIFQEQVLPback to top mRNA from alignment at H-elongata_contig64262:869..1096- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64262.14013.1 ID=mRNA_H-elongata_contig64262.14013.1|Name=mRNA_H-elongata_contig64262.14013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig64262:869..1096- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64262:869..1096- >mRNA_H-elongata_contig64262.14013.1 ID=mRNA_H-elongata_contig64262.14013.1|Name=mRNA_H-elongata_contig64262.14013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig64262:869..1096- (Himanthalia elongata Himel1 dioecious)back to top |