mRNA_H-elongata_contig64256.14012.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI) HSP 1 Score: 184 bits (468), Expect = 9.040e-52 Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 1
Query: 22 DSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
D LTP +ALRRVFGH+AFR+GQ WG+ RA+ G+ SLLVLATG+GKSL YQLPALLLPGITVVVSPLVSLMEDQMA LPPQLPGASLSGSHGGLREVAGTVRDL+AGRVKV
Sbjct: 1341 DLPLTPASALRRVFGHKAFREGQEWGVARAMGGQASLLVLATGTGKSLTYQLPALLLPGITVVVSPLVSLMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKV 1451
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.240e-51 Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 1
Query: 22 DSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
D LTP +ALRRVFGH+ FR+GQ WG+ RA+ G+ SLLVLATGSGKSL YQLPALLLPGITVVVSPLVSLMEDQMA LPPQLPGASLSGSHGGLREVAGTVRDL+AGRVKV
Sbjct: 1487 DLPLTPASALRRVFGHKTFREGQEWGVARAMGGQASLLVLATGSGKSLTYQLPALLLPGITVVVSPLVSLMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKV 1597
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A8J2WSZ9_9STRA (DNA helicase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSZ9_9STRA) HSP 1 Score: 122 bits (305), Expect = 8.220e-30 Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 28 RLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGG-LREVAGTVRDLRAGRVKV 354
+L P+ LR VFGHE +R GQ W +DR L G+ +L VL TG+GKSL YQLPA L+ G+ VVVSPLV+L+++Q++RLPP+LP +LSG HG LR+ + D+ GR KV
Sbjct: 445 QLAPSDVLRSVFGHEQYRTGQEWAVDRVLEGKSALCVLPTGAGKSLCYQLPACLVKGVVVVVSPLVALIDEQLSRLPPELPAVALSGRHGATLRQRVQALDDVEKGRAKV 554
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A7S3JR36_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR36_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.070e-29 Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 19 DDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
D S+++ LR VFG+ FR GQ+W I+R L+G S+LVL TGSGKSL YQLPALL G+TVVVSPL++L+E+QMARLPP+LP SL GS G L ++ D++ GR K+
Sbjct: 268 DTSQMSSVQVLRSVFGYSDFRPGQQWAIERVLQGLSSILVLPTGSGKSLCYQLPALLQNGLTVVVSPLLALIEEQMARLPPELPAVSLGGS-GSLESRLRSIEDIKHGRAKI 378
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A7S2W966_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W966_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.840e-28 Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 88 QRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
Q W I R L GE +LLV ATGSGKSL YQLPALLL G+T+V+SPLVSLMEDQ+A LPP +PGA LSG G+ E+A T+R LR R+KV
Sbjct: 1 QLWAIKRVLGGESTLLVQATGSGKSLCYQLPALLLEGLTIVISPLVSLMEDQLASLPPSIPGACLSGQQSGV-EIAKTIRGLRENRIKV 88
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.060e-27 Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 58 VFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPG--ITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
+FGH+ FR GQ W I RAL GERSLL+L TG+GKSL YQ+ A L P + VVVSPLVSLM DQ+ARLPPQ+PGA L+G +RE+A +RDLR+G++++
Sbjct: 1013 IFGHKEFRPGQFWAIKRALAGERSLLMLPTGAGKSLCYQMAAALSPAGSLVVVVSPLVSLMVDQVARLPPQVPGACLAGDVS-MRELARIIRDLRSGQLRI 1112
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A835ZBS9_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS9_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.870e-26 Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1
Query: 49 LRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQM 246
LRRVFGH AFR+GQ W I+R L G +LLV ATG+GKSL YQLPALLLPG+TVVVSPLVSLMEDQ+
Sbjct: 1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 66
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A2R5GCC5_9STRA (DNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCC5_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.660e-26 Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1
Query: 49 LRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
L VFG E FR Q W I R ++G+ SLLV TGSGKSL YQLPALLLPG+T+V+SPLV+LMEDQ+ LP +PGA LS G RE+A ++ ++AGR+KV
Sbjct: 702 LEDVFGFEKFRGDQLWAIKRIMQGKSSLLVQGTGSGKSLCYQLPALLLPGLTLVISPLVALMEDQLKSLPMAIPGAILSHQQSG-REMARAIKMVQAGRIKV 802
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A4RY08_OSTLU (DNA helicase n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RY08_OSTLU) HSP 1 Score: 110 bits (276), Expect = 6.300e-26 Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 7 KGEDDDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
+ + D S T L R FGHE FR GQ + R LRGE +L +L TG+GKSL YQLPALLLPG+T+V+SPL++LM DQM LPP LPG +L S R++ T+ LRAG +KV
Sbjct: 7 RAKSDPSEANLTEVLNRGFGHEQFRPGQLEIVQRVLRGENTLALLPTGAGKSLTYQLPALLLPGLTIVISPLLALMADQMDSLPPSLPGGALR-SDMDRRDMWETLTRLRAGELKV 121
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: C1MMA9_MICPC (DNA helicase (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MMA9_MICPC) HSP 1 Score: 109 bits (273), Expect = 1.590e-25 Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 1
Query: 40 TTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
T LRR FGHE+FR GQ I R LRG SL +L TG+GKSL YQLPALL PG+T+VVSPL++LM DQ+ LPP LPGA+L S L + T+ +LRAG+ KV
Sbjct: 15 TDILRRAFGHESFRPGQLEVIRRVLRGGSSLALLPTGAGKSLTYQLPALLFPGLTLVVSPLLALMSDQLRGLPPALPGAALR-SDQSLDALFHTLDELRAGKFKV 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64256.14012.1 >prot_H-elongata_contig64256.14012.1 ID=prot_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp EEKGEDDDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGback to top mRNA from alignment at H-elongata_contig64256:1681..2034- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64256.14012.1 ID=mRNA_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig64256:1681..2034- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64256:1681..2034- >mRNA_H-elongata_contig64256.14012.1 ID=mRNA_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig64256:1681..2034- (Himanthalia elongata Himel1 dioecious)back to top |