mRNA_H-elongata_contig64214.14008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64214.14008.1
Unique NamemRNA_H-elongata_contig64214.14008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64214.14008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64214contigH-elongata_contig64214:2679..3448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size771
Cds size411
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.0134473-UTR-H-elongata_contig64214:2678..30371622931028.0134473-UTR-H-elongata_contig64214:2678..3037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64214 2679..3037 +
1691679667.904474-UTR-H-elongata_contig64214:2678..30371691679667.904474-UTR-H-elongata_contig64214:2678..3037Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64214 2679..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.0344758-CDS-H-elongata_contig64214:3037..34481622931028.0344758-CDS-H-elongata_contig64214:3037..3448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64214 3038..3448 +
1691679667.925886-CDS-H-elongata_contig64214:3037..34481691679667.925886-CDS-H-elongata_contig64214:3037..3448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64214 3038..3448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64214.14008.1prot_H-elongata_contig64214.14008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64214 3038..3448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64214.14008.1

>prot_H-elongata_contig64214.14008.1 ID=prot_H-elongata_contig64214.14008.1|Name=mRNA_H-elongata_contig64214.14008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MVYNTPKRRHLQRKEKKEKIHTVINELRMVVRMRAYGRTIEGRATGLMTV
MYVTRGRACYLPVITANQLLMLPTGNNSTQPGTKTSHPQRVILRIVRDFS
PSSDASMSDTHPSSLSSSSSSPLPMWPSDSTESGSHS
back to top

mRNA from alignment at H-elongata_contig64214:2679..3448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64214.14008.1 ID=mRNA_H-elongata_contig64214.14008.1|Name=mRNA_H-elongata_contig64214.14008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=770bp|location=Sequence derived from alignment at H-elongata_contig64214:2679..3448+ (Himanthalia elongata Himel1 dioecious)
GGCAGTTTCCTCACGAAATATTTTAGAAGATGGTGTTTTGTGTATAGATG
CAGCAAGTCATCGAATCTGCTCTCTGTAATTAGAGAGAATCGTGGATGTG
GATGCATCTGAGTACGGATTCGGTTTTCGCCTGAAGGAGCTCCCCTAGTG
GGGCGAATGCATCTGGGGAGTTGGTCTCACATTTGACTACTCAGTGACTG
GTATCGTTAATCTCAATGAAACAAGATTATAGATTATTGTTTTACTAAAT
TCCCACATAAGCTGACGCCTAACTCCAGCATGTAGCCACAAGGTAGGACC
ACCACCATCCGGAAGAGAAAGGTTCGACGTACTCTCCATAAAAAAACAAA
CGACAATGAATGGTGTATAATACTCCGAAAAGGCGACATCTCCAAAGAAA
AGAAAAGAAAGAGAAAATACATACAGTTATTAACGAACTGCGTATGGTTG
TCAGGATGCGGGCTTATGGGAGGACGATTGAAGGCAGAGCAACAGGTTTA
ATGACAGTGATGTATGTTACCCGTGGTCGAGCATGTTACCTACCGGTTAT
AACCGCAAATCAGCTTTTGATGTTACCTACCGGTAATAACAGCACCCAAC
CGGGGACGAAAACTTCCCATCCCCAGCGTGTTATACTACGTATTGTGCGC
GATTTTTCCCCCTCATCGGATGCATCCATGTCCGATACCCATCCGTCGTC
GCTGTCATCGTCAAGCTCGTCACCGCTCCCGATGTGGCCGTCCGACTCTA
CAGAGTCCGGGTCCCACTCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig64214:2679..3448+

>mRNA_H-elongata_contig64214.14008.1 ID=mRNA_H-elongata_contig64214.14008.1|Name=mRNA_H-elongata_contig64214.14008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig64214:2679..3448+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTATAATACTCCGAAAAGGCGACATCTCCAAAGAAAAGAAAAGAA
AGAGAAAATACATACAGTTATTAACGAACTGCGTATGGTTGTCAGGATGC
GGGCTTATGGGAGGACGATTGAAGGCAGAGCAACAGGTTTAATGACAGTG
ATGTATGTTACCCGTGGTCGAGCATGTTACCTACCGGTTATAACCGCAAA
TCAGCTTTTGATGTTACCTACCGGTAATAACAGCACCCAACCGGGGACGA
AAACTTCCCATCCCCAGCGTGTTATACTACGTATTGTGCGCGATTTTTCC
CCCTCATCGGATGCATCCATGTCCGATACCCATCCGTCGTCGCTGTCATC
GTCAAGCTCGTCACCGCTCCCGATGTGGCCGTCCGACTCTACAGAGTCCG
GGTCCCACTCGATGGTGTATAATACTCCGAAAAGGCGACATCTCCAAAGA
AAAGAAAAGAAAGAGAAAATACATACAGTTATTAACGAACTGCGTATGGT
TGTCAGGATGCGGGCTTATGGGAGGACGATTGAAGGCAGAGCAACAGGTT
TAATGACAGTGATGTATGTTACCCGTGGTCGAGCATGTTACCTACCGGTT
ATAACCGCAAATCAGCTTTTGATGTTACCTACCGGTAATAACAGCACCCA
ACCGGGGACGAAAACTTCCCATCCCCAGCGTGTTATACTACGTATTGTGC
GCGATTTTTCCCCCTCATCGGATGCATCCATGTCCGATACCCATCCGTCG
TCGCTGTCATCGTCAAGCTCGTCACCGCTCCCGATGTGGCCGTCCGACTC
TACAGAGTCCGGGTCCCACTCG
back to top