mRNA_H-elongata_contig64210.14007.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64210.14007.1
Unique NamemRNA_H-elongata_contig64210.14007.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A6H5JS50_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS50_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.210e-24
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTR 268
            MR  VC  WGPPS+L+++D G P P  G+GEVAIAV ACAVNF D+LV+QGKYQ KPKLPF PGGE+AGVVT VG G  R
Sbjct:    1 MRWCVCKQWGPPSSLSIED-GPPLPQPGKGEVAIAVSACAVNFPDLLVVQGKYQTKPKLPFAPGGEIAGVVTAVGAGSAR 79          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A538FJN0_9ACTN (NADPH:quinone oxidoreductase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538FJN0_9ACTN)

HSP 1 Score: 100 bits (248), Expect = 3.170e-20
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGC---TRSESVLTATGDGYVVVFAVLD 328
            M++++C T+GPP +L V++   P P  G G+V I VHACAVNF D+L+IQ KYQ KP+LPF PGGEVAGV+  VGEG       + VL +TG G +    V+D
Sbjct:    1 MKALLCKTFGPPESLVVEEVEDPRP--GPGQVVIDVHACAVNFPDLLIIQDKYQFKPQLPFSPGGEVAGVIGAVGEGVGGVAVGDRVLASTGWGGLAEKVVID 101          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A317E298_9PROT (NADPH:quinone oxidoreductase n=2 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317E298_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 4.110e-20
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGE---GCTRSESVLTATGDG 301
            M+ ++C  +GPP +L ++D  GP P  G+GEV + +HA  VNF DVL+IQGKYQ KP++PF PGGE AGVVT+VGE   G    + V+  TG G
Sbjct:    1 MKQLLCKAYGPPESLMLED--GPAPALGKGEVRVRLHAAGVNFPDVLIIQGKYQFKPEMPFAPGGEAAGVVTEVGERVSGFAVGDRVIVMTGWG 92          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A8D5WMW7_9PROT (Alcohol dehydrogenase n=1 Tax=Alphaproteobacteria bacterium SO-S41 TaxID=2829083 RepID=A0A8D5WMW7_9PROT)

HSP 1 Score: 99.4 bits (246), Expect = 6.350e-20
Identity = 54/103 (52.43%), Postives = 67/103 (65.05%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTR---SESVLTATGDGYVVVFAVLD 328
            MR+V+C  +GPP +L V+D   P P AG+G+  I+V A  VNF DVL+IQ KYQ KP LPF PGGEVAG+V +VGEG T     + VL +TG G      V D
Sbjct:    1 MRAVLCKEYGPPDSLVVEDV--PSPKAGKGQYVISVKAAGVNFPDVLIIQNKYQFKPALPFSPGGEVAGIVKEVGEGVTHLKPGDRVLGSTGWGGFAEEVVAD 101          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: UPI0019AF0637 (NADPH:quinone oxidoreductase family protein n=1 Tax=Arcicella sp. TaxID=1872628 RepID=UPI0019AF0637)

HSP 1 Score: 97.8 bits (242), Expect = 2.040e-19
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTR---SESVLTATGDG 301
            M++V+C T+GPP  L V++   P   A  G+V I+V AC VNF D L+IQGKYQ+KP +PF PGGEV+G++ ++GEG T     + V + TG G
Sbjct:    1 MKAVLCKTYGPPETLVVEEVASPS--ASRGKVVISVKACGVNFPDTLIIQGKYQIKPPMPFSPGGEVSGIIKEIGEGVTHLKVGDKVFSLTGFG 92          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A520HCG6_9BURK (NADPH:quinone oxidoreductase family protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520HCG6_9BURK)

HSP 1 Score: 97.1 bits (240), Expect = 4.130e-19
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTR---SESVLTATGDG 301
            M++V+C  +GPPS L V+D   P P  G G + IA  AC VNF D L+IQG+YQ KP  PF PGGEVAGVV ++GEG T     + V+ AT  G
Sbjct:    1 MKAVLCRAFGPPSVLRVEDVPSPRP--GAGRIVIATRACGVNFPDTLIIQGRYQFKPDFPFSPGGEVAGVVKELGEGVTGLRIGDRVIAATTHG 92          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: E8U6G2_DEIML (NADPH:quinone reductase n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) TaxID=709986 RepID=E8U6G2_DEIML)

HSP 1 Score: 96.7 bits (239), Expect = 5.270e-19
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEG 259
            M +VVC  WGPP +L V+    P P AG GEV +AV A +VNF DVL+IQGKYQV+P+LPF PG E AGVV  VGEG
Sbjct:    1 MDAVVCRAWGPPESLVVESQ--PEPVAGAGEVVLAVRAASVNFPDVLMIQGKYQVRPELPFTPGAEAAGVVLSVGEG 75          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A4V1RWE2_9BACT (NADPH:quinone oxidoreductase family protein n=3 Tax=Spirosoma TaxID=107 RepID=A0A4V1RWE2_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 5.350e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTR---SESVLTATGDG 301
            M++++C  +GPP  L + D     P AG G+V I V AC VNF D L+I+GKYQ+KP +PF PGGEVAG+VT+VGEG +     + V + TG G
Sbjct:    1 MKAILCEQYGPPEQLVLTDVA--QPKAGAGQVVIQVEACGVNFPDTLIIEGKYQIKPPMPFSPGGEVAGIVTEVGEGVSHLRAGDRVFSLTGYG 92          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A6G9AW29_9BACT (NADPH:quinone oxidoreductase family protein n=2 Tax=Spirosoma TaxID=107 RepID=A0A6G9AW29_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 7.240e-19
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTR---SESVLTATGDG 301
            M++V+C  +GPP  L V++   P   AG+G+V I+V AC VNF D L+I+GKYQ KP  PF PGGEVAG+V +VGEG T     ++V + TG G
Sbjct:    1 MKAVLCKQFGPPETLVVEEIESPK--AGKGQVVISVKACGVNFPDTLMIEGKYQFKPSFPFSPGGEVAGIVKEVGEGVTHLNVGDNVFSLTGHG 92          
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Match: A0A534U5N6_9DELT (NADPH:quinone oxidoreductase family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534U5N6_9DELT)

HSP 1 Score: 96.3 bits (238), Expect = 7.650e-19
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 2
Query:   29 MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQGKYQVKPKLPFVPGGEVAGVVTDVGEGCTRSE---SVLTATGDG 301
            M++V+C  +GPP +L V+D   P P    GEV +AV A  VNF DVL+IQ KYQ +P LPF PGGEVAGVVT +GEG T  E    V+ +TG G
Sbjct:    1 MKAVLCKEYGPPDSLVVEDVASPTP--NRGEVLLAVRAAGVNFPDVLIIQNKYQFRPPLPFAPGGEVAGVVTALGEGVTTLEIGDRVIGSTGWG 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64210.14007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS50_9PHAE1.210e-2468.75PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A538FJN0_9ACTN3.170e-2051.46NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A317E298_9PROT4.110e-2052.13NADPH:quinone oxidoreductase n=2 Tax=Zavarzinia aq... [more]
A0A8D5WMW7_9PROT6.350e-2052.43Alcohol dehydrogenase n=1 Tax=Alphaproteobacteria ... [more]
UPI0019AF06372.040e-1948.94NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A520HCG6_9BURK4.130e-1952.13NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
E8U6G2_DEIML5.270e-1962.34NADPH:quinone reductase n=1 Tax=Deinococcus marico... [more]
A0A4V1RWE2_9BACT5.350e-1950.00NADPH:quinone oxidoreductase family protein n=3 Ta... [more]
A0A6G9AW29_9BACT7.240e-1951.06NADPH:quinone oxidoreductase family protein n=2 Ta... [more]
A0A534U5N6_9DELT7.650e-1954.26NADPH:quinone oxidoreductase family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64210contigH-elongata_contig64210:2..1458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue7.2e-23
Seed eggNOG ortholog2880.D8LJN9
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00344,ko:K00384,ko:K15172
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0604@1,KOG1198@2759
EC1.6.5.5,1.8.1.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size1081
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64210.14007.1prot_H-elongata_contig64210.14007.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64210 743..1430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.881383-UTR-H-elongata_contig64210:1..7421622931027.881383-UTR-H-elongata_contig64210:1..742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64210 2..742 -
1691679667.8684404-UTR-H-elongata_contig64210:1..7421691679667.8684404-UTR-H-elongata_contig64210:1..742Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64210 2..742 -
1622931027.9404166-UTR-H-elongata_contig64210:1430..14581622931027.9404166-UTR-H-elongata_contig64210:1430..1458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64210 1431..1458 -
1691679667.8955631-UTR-H-elongata_contig64210:1430..14581691679667.8955631-UTR-H-elongata_contig64210:1430..1458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64210 1431..1458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.8996542-CDS-H-elongata_contig64210:742..9041622931027.8996542-CDS-H-elongata_contig64210:742..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64210 743..904 -
1691679667.8786266-CDS-H-elongata_contig64210:742..9041691679667.8786266-CDS-H-elongata_contig64210:742..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64210 743..904 -
1622931027.9180458-CDS-H-elongata_contig64210:1280..14301622931027.9180458-CDS-H-elongata_contig64210:1280..1430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64210 1281..1430 -
1691679667.8868449-CDS-H-elongata_contig64210:1280..14301691679667.8868449-CDS-H-elongata_contig64210:1280..1430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64210 1281..1430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64210.14007.1

>prot_H-elongata_contig64210.14007.1 ID=prot_H-elongata_contig64210.14007.1|Name=mRNA_H-elongata_contig64210.14007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MRSVVCTTWGPPSALNVQDTGGPPPPAGEGEVAIAVHACAVNFSDVLVIQ
GKYQVKPKLPFVPGGEVAGVVTDVGEGCTRSESVLTATGDGYVVVFAVLD
RIN*
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mRNA from alignment at H-elongata_contig64210:2..1458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64210.14007.1 ID=mRNA_H-elongata_contig64210.14007.1|Name=mRNA_H-elongata_contig64210.14007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1457bp|location=Sequence derived from alignment at H-elongata_contig64210:2..1458- (Himanthalia elongata Himel1 dioecious)
AGCGTGAAGAAATAAAGGGGGTGGGACAATGCGTTCGGTGGTGTGCACAA CTTGGGGACCCCCGTCAGCTCTTAACGTACAGGACACGGGCGGCCCGCCT CCGCCGGCCGGAGAGGGAGAGGTCGCCATAGCGGTGCACGCGTGCGCCGT GAACTTCTCGGACGTGCTAGTCATCCAGGCACGAATGGTAGTGTGCTATT AATAGCCTCGACTCCTTTTGCGGGGTGCCGTGCCGTACCCATCCCGATGC CATTGAGGGGTGCCGATGCCGGTGTGGCGGAGAATATAGAGCACCCTGCG GAAACTAGTGCCGACTTGAGTGAGCACTCTGGATGTGAAAAATATCGGTC GGTGCAGTCTGTCCATTTTCCTCCGAGATCCCCAGAGAAGTGTGTTGACG TTAATCCTGGAGCACCCGCGCCAATTTTGATGATGATGAGAGAGAGACAC GATCAGCTCGTGAAGGGAAAATCTACTGCACATCACACCACACCACACCC GCGATTCCCGATCATATTCCTCCTTCCCCACCCCCTTTTACTCTGCATCC GCAGGGAAAGTACCAGGTGAAGCCGAAGCTGCCCTTCGTGCCAGGTGGAG AAGTCGCGGGCGTCGTCACCGATGTAGGCGAGGGCTGCACAAGGTCGGAG TCCGTTCTTACAGCGACGGGTGACGGATATGTTGTCGTGTTCGCTGTCCT CGACAGAATTAATTAAGTGCAGCGTTACTTTGTTTCGGTTTGTTTTGTTT TTTGGTTTGTTCTCAAGCTTCACGGAAATCCCCCGGGAGGCGTTTCGCAT AGCCTGGGCCGTCGCGTTGTGTGCCTGCGCGGCACGGTACTCCTTCGCTA GATGATAACCCTGCCGCCGAATGAAGAGAGAGCGCGGTATATCGTGAAGG AAGATTATAGAGCACTCGATCTCACCTGTTCGTACATGCTGGGAAAGTTT CCAGAGTGGACACCCCCGGTTCCCTCAATGGTTGAAAACATAACCATTCG ACTGGCAAGAGCTTCTCGCCTATATCCCATTCCCCATTTGACTCACGGGA AATCGCACAAAGCCTAATAACGCCCCGAGGCCATCTCGAAGGCAACTGAT TGATAGTGGCATCGACAGTAGGACGAAGGTCGCCTCAGGAGCTATTTCGC AGGAGGTGCCGTCCACGCAGAGTGTTTTACTCGTAGAAAACTCTCGGTAG CAAAACGAGATACAAACCTGCTGAAAGCATCCGATCGGCCCCCCTCGAGA CCAGGGAAGAATCAACGCTCTCACAATCTTAACGATAGCACTGTAGCCGT GTCCGTCTTTCACATTGGAAAATGAAATCTTAAGGCTGTATTTTTTCTCC TGTCTTTTTAGTATTGCTCAATACTCGCCACCGCTCTCTCGCTCGTCCTT CAGCGCGTGCTGACGATGACTGCGGCGTGTTATTTTTTGTTGTTTTTTTA ACCTAGC
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Coding sequence (CDS) from alignment at H-elongata_contig64210:2..1458-

>mRNA_H-elongata_contig64210.14007.1 ID=mRNA_H-elongata_contig64210.14007.1|Name=mRNA_H-elongata_contig64210.14007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig64210:2..1458- (Himanthalia elongata Himel1 dioecious)
ATGCGTTCGGTGGTGTGCACAACTTGGGGACCCCCGTCAGCTCTTAACGT
ACAGGACACGGGCGGCCCGCCTCCGCCGGCCGGAGAGGGAGAGGTCGCCA
TAGCGGTGCACGCGTGCGCCGTGAACTTCTCGGACGTGCTAGTCATCCAG
ATGCGTTCGGTGGTGTGCACAACTTGGGGACCCCCGTCAGCTCTTAACGT
ACAGGACACGGGCGGCCCGCCTCCGCCGGCCGGAGAGGGAGAGGTCGCCA
TAGCGGTGCACGCGTGCGCCGTGAACTTCTCGGACGTGCTAGTCATCCAG
GGAAAGTACCAGGTGAAGCCGAAGCTGCCCTTCGTGCCAGGTGGAGAAGT
CGCGGGCGTCGTCACCGATGTAGGCGAGGGCTGCACAAGGTCGGAGTCCG
TTCTTACAGCGACGGGTGACGGATATGTTGTCGTGTTCGCTGTCCTCGAC
AGAATTAATTAAGGAAAGTACCAGGTGAAGCCGAAGCTGCCCTTCGTGCC
AGGTGGAGAAGTCGCGGGCGTCGTCACCGATGTAGGCGAGGGCTGCACAA
GGTCGGAGTCCGTTCTTACAGCGACGGGTGACGGATATGTTGTCGTGTTC
GCTGTCCTCGACAGAATTAATTAA
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