mRNA_H-elongata_contig64199.14006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64199.14006.1
Unique NamemRNA_H-elongata_contig64199.14006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A7R9W7V1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7V1_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.620e-54
Identity = 89/108 (82.41%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIA+MTVGKDV+MLFTDV+NC+QT NIELKKLVYLYLINYAK+QPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRV++ITEYLCEPL +ALRD+  +  KT  V
Sbjct:   51 KVIASMTVGKDVSMLFTDVLNCVQTGNIELKKLVYLYLINYAKSQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVDRITEYLCEPLSRALRDEDPYVRKTAAV 158
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A7S2EVX9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVX9_TRICV)

HSP 1 Score: 177 bits (449), Expect = 2.780e-54
Identity = 89/108 (82.41%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIA+MTVGKDV+MLFTDV+NC+QT NIELKKLVYLYLINYAK+QPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRV++ITEYLCEPL +ALRD+  +  KT  V
Sbjct:   10 KVIASMTVGKDVSMLFTDVLNCVQTGNIELKKLVYLYLINYAKSQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVDRITEYLCEPLSRALRDEDPYVRKTAAV 117
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A836CH70_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH70_9STRA)

HSP 1 Score: 188 bits (478), Expect = 2.570e-53
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIANMTVGKDV+MLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDA DPNPLIRALAVRTMGCIRVEKITEYLCEPLR+ALRDD  +  KT  V
Sbjct:   46 KVIANMTVGKDVSMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDAKDPNPLIRALAVRTMGCIRVEKITEYLCEPLRRALRDDDPYVRKTAAV 153
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A482RX86_9ARCH (Adaptin_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX86_9ARCH)

HSP 1 Score: 174 bits (441), Expect = 1.850e-52
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            QVIANMTVGKDV+ LF DVINCIQT+N+ELKKLVYLYLINYAK+QP+L LLAVNTFVKDANDPNPLIRALA+RTMGCIRVEKITEYLCEPL + L+D+  +  KT  V
Sbjct:   22 QVIANMTVGKDVSTLFPDVINCIQTDNLELKKLVYLYLINYAKSQPDLALLAVNTFVKDANDPNPLIRALAIRTMGCIRVEKITEYLCEPLSRCLKDEDPYVRKTAAV 129
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A6H5J742_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J742_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.090e-52
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:   37 MTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            MTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDD  +  KT  V
Sbjct:    1 MTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDDPYVRKTAAV 103
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A7S3MAA3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAA3_9STRA)

HSP 1 Score: 173 bits (439), Expect = 9.930e-52
Identity = 85/108 (78.70%), Postives = 98/108 (90.74%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIANMT+GKDV+ LFTDVINCIQT+N+ELKKLVYLYLINYAK+QP+L LLAVNTFVKDANDPNPLIRALA+RTMGCIRV+KITEYLCEPL + L+D+  +  KT  V
Sbjct:   45 KVIANMTIGKDVSTLFTDVINCIQTDNLELKKLVYLYLINYAKSQPDLALLAVNTFVKDANDPNPLIRALAIRTMGCIRVDKITEYLCEPLSRCLKDEDPYVRKTAAV 152
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A812ZXS6_SYMMI (Ap2b1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZXS6_SYMMI)

HSP 1 Score: 171 bits (432), Expect = 1.090e-51
Identity = 84/108 (77.78%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIANMTVGKDV+ LFTDV+NCIQT+N+ELKKLVYLYLINYAK+QPEL +LAVNTFVKDANDPNPLIRAL++RTMGCIRV  ITEYLCEPL + LRD+  +  KT  V
Sbjct:   43 KVIANMTVGKDVSTLFTDVVNCIQTDNLELKKLVYLYLINYAKSQPELAMLAVNTFVKDANDPNPLIRALSIRTMGCIRVNTITEYLCEPLSRCLRDEDPYVRKTAAV 150
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A7S2H873_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H873_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.250e-51
Identity = 89/108 (82.41%), Postives = 100/108 (92.59%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIA+MTVGKDV+MLFTDV+NC+QT NIELKKLVYLYLINYAK+QPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRV++ITEYLCEPL +ALRD+  +  KT  V
Sbjct:   48 KVIASMTVGKDVSMLFTDVLNCVQTGNIELKKLVYLYLINYAKSQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVDRITEYLCEPLSRALRDEDPYVRKTAAV 155
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A816A959_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A816A959_9BILA)

HSP 1 Score: 168 bits (426), Expect = 1.710e-50
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIA+MTVGKDV+ LF DV+NC+QT+N+ELKKLVYLYL+NYAKTQPE+ +LAVNTF KD NDPNPLIRALAVRTMGCIRVEKITE+LCEPLRK L+D+  +  KT  V
Sbjct:   12 KVIASMTVGKDVSQLFPDVVNCMQTDNLELKKLVYLYLMNYAKTQPEMAILAVNTFAKDCNDPNPLIRALAVRTMGCIRVEKITEHLCEPLRKCLKDEDPYVRKTAAV 119
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BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Match: A0A813QRU4_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A813QRU4_ADIRI)

HSP 1 Score: 168 bits (426), Expect = 1.760e-50
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:   22 QVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAKTQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRKALRDDVSHDSKTPRV 345
            +VIA+MTVGKDV+ LF DV+NC+QT+N+ELKKLVYLYL+NYAKTQPE+ +LAVNTF KD NDPNPLIRALAVRTMGCIRVEKITE+LCEPLRK L+D+  +  KT  V
Sbjct:   35 KVIASMTVGKDVSQLFPDVVNCMQTDNLELKKLVYLYLMNYAKTQPEMAILAVNTFAKDCNDPNPLIRALAVRTMGCIRVEKITEHLCEPLRKCLKDEDPYVRKTAAV 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64199.14006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9W7V1_9STRA2.620e-5482.41Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2EVX9_TRICV2.780e-5482.41Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A836CH70_9STRA2.570e-5389.81Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A482RX86_9ARCH1.850e-5280.56Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A6H5J742_9PHAE2.090e-5293.20B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A7S3MAA3_9STRA9.930e-5278.70Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A812ZXS6_SYMMI1.090e-5177.78Ap2b1 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S2H873_9STRA1.250e-5182.41Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A816A959_9BILA1.710e-5075.93Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A813QRU4_ADIRI1.760e-5075.93Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64199contigH-elongata_contig64199:443..1673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog2880.D8LDW2
KEGG koko:K11825,ko:K12392
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,map04142,map04144,map04721,map04961,map05016
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005886,GO:0005905,GO:0005911,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0008150,GO:0009267,GO:0009506,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0012505,GO:0012506,GO:0012510,GO:0016020,GO:0016043,GO:0016050,GO:0022402,GO:0030054,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030587,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031152,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032502,GO:0032991,GO:0033298,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045334,GO:0048475,GO:0048856,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0055044,GO:0061640,GO:0071496,GO:0071840,GO:0071944,GO:0090702,GO:0097708,GO:0098588,GO:0098630,GO:0098743,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1903047
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.8101146-CDS-H-elongata_contig64199:442..6961622931027.8101146-CDS-H-elongata_contig64199:442..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64199 443..696 -
1691679667.8460011-CDS-H-elongata_contig64199:442..6961691679667.8460011-CDS-H-elongata_contig64199:442..696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64199 443..696 -
1622931027.8299801-CDS-H-elongata_contig64199:1576..16731622931027.8299801-CDS-H-elongata_contig64199:1576..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64199 1577..1673 -
1691679667.8593147-CDS-H-elongata_contig64199:1576..16731691679667.8593147-CDS-H-elongata_contig64199:1576..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64199 1577..1673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64199.14006.1prot_H-elongata_contig64199.14006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64199 443..1673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64199.14006.1

>prot_H-elongata_contig64199.14006.1 ID=prot_H-elongata_contig64199.14006.1|Name=mRNA_H-elongata_contig64199.14006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
VLVPVLVQVIANMTVGKDVAMLFTDVINCIQTENIELKKLVYLYLINYAK
TQPELTLLAVNTFVKDANDPNPLIRALAVRTMGCIRVEKITEYLCEPLRK
ALRDDVSHDSKTPRVP*
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mRNA from alignment at H-elongata_contig64199:443..1673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64199.14006.1 ID=mRNA_H-elongata_contig64199.14006.1|Name=mRNA_H-elongata_contig64199.14006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1231bp|location=Sequence derived from alignment at H-elongata_contig64199:443..1673- (Himanthalia elongata Himel1 dioecious)
GTGCTGGTGCCGGTGCTGGTGCAGGTGATTGCAAACATGACCGTTGGAAA
GGATGTGGCGATGCTCTTCACGGACGTGATAAACTGCATTCAGACGGGTG
AGTTTTTCTCTTTGATTATATAGTGTGCTTTTCTTTTCTTTTTTAAACTT
ATGGTTTTATTCCAACCCTCCGAACATCTACCACGCCTTCTTGGCACCAT
AAGAGAGGTGCAGTCCAGGGGGACCAACTATATATCTCTCGTCAGGTTCG
AATGAATGTGGTGTACACTAATTACTACCTGTTTGAGCACAAAATCGTCA
CATGTGGGTTAATTGTTAAATCGTGTTCGTTTATTCAAGGAAAAAAAATA
AAAATAAACTCTCAGCTTGGTAGCCTCTCTGGCTGCTGATCTTGGAAGGG
AGAGGGCTACTGACAAAAGTGTCCTAGTTTGGACGTCTGTGGCGATTGAT
GCGTAGAGTTGCTTGGTCGACAGAGCGTCATTTTTTATATTGTTTACGAT
AAATTTGGCGGGGTTCGTGTCAAGAAAGCGAGAGCTCTGGATCTGGTGGT
GAGCCGACGACAATGGGCAAGTTCGCCTTAAAGCGCGCCCGCGGGTTGGA
TCATAGTGGCGATCTCGTTTTTGTTTTGTGGCTTCAATTTGTCGGCACTT
CGCCTTTCTTCCTTCCTTCCTTCCTTCCTACCAAAATGTTATGTGTGGCG
CCACAGTGGCGCGTGACCGTACTCGTTCCTCCGGGAGTACAATCTAGTCT
ATGAATAGCTTAGCGCGATCTGTTATATTCGTTTGGGCGCGGAAGGAGAA
AAAGACAATCTCGATGTCGTGCTGAGAGCATGCGGTCGGGAAAGCCGACA
TACCGGGTACAATATTTAGCGGTCGTATAATCAAATGTACCCGTCTGACA
CAGTTTCTAACATATACCATAGTAGCTATACGTATATATATATATATATT
GTTTCCTGCCCGTGGCCCTGCCCTCAGAGAACATCGAGCTGAAGAAACTC
GTGTACCTGTACTTGATCAACTATGCCAAGACGCAGCCGGAGCTGACGCT
GCTGGCGGTGAACACGTTCGTCAAGGACGCCAACGACCCTAACCCTCTAA
TCCGCGCCCTCGCCGTGCGCACCATGGGGTGCATCCGAGTCGAAAAGATC
ACGGAGTACCTCTGCGAGCCCCTCCGGAAGGCCCTCCGCGATGACGTAAG
CCATGACAGCAAAACGCCACGTGTGCCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64199:443..1673-

>mRNA_H-elongata_contig64199.14006.1 ID=mRNA_H-elongata_contig64199.14006.1|Name=mRNA_H-elongata_contig64199.14006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig64199:443..1673- (Himanthalia elongata Himel1 dioecious)
GTGCTGGTGCCGGTGCTGGTGCAGGTGATTGCAAACATGACCGTTGGAAA
GGATGTGGCGATGCTCTTCACGGACGTGATAAACTGCATTCAGACGGGTG
CTGGTGCCGGTGCTGGTGCAGGTGATTGCAAACATGACCGTTGGAAAGGA
TGTGGCGATGCTCTTCACGGACGTGATAAACTGCATTCAGACGGAGAACA
TCGAGCTGAAGAAACTCGTGTACCTGTACTTGATCAACTATGCCAAGACG
CAGCCGGAGCTGACGCTGCTGGCGGTGAACACGTTCGTCAAGGACGCCAA
CGACCCTAACCCTCTAATCCGCGCCCTCGCCGTGCGCACCATGGGGTGCA
TCCGAGTCGAAAAGATCACGGAGTACCTCTGCGAGCCCCTCCGGAAGGCC
CTCCGCGATGACGTAAGCCATGACAGCAAAACGCCACGTGTGCCGTGAAG
AACATCGAGCTGAAGAAACTCGTGTACCTGTACTTGATCAACTATGCCAA
GACGCAGCCGGAGCTGACGCTGCTGGCGGTGAACACGTTCGTCAAGGACG
CCAACGACCCTAACCCTCTAATCCGCGCCCTCGCCGTGCGCACCATGGGG
TGCATCCGAGTCGAAAAGATCACGGAGTACCTCTGCGAGCCCCTCCGGAA
GGCCCTCCGCGATGACGTAAGCCATGACAGCAAAACGCCACGTGTGCCGT
GA
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