mRNA_H-elongata_contig64152.14001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64152.14001.1
Unique NamemRNA_H-elongata_contig64152.14001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64152.14001.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.090e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 MKHIGSPLRAPDEMDKYLREIEDQRDLQRSRQLDLXXXXQRSQQHVAAATRRIRAPQWCSRLFANSAAGVGTGDSDCSGRHRGFLFELFELRNEPGEEKYLQALGSLL 324
            M+ IGSPLR  ++ + YLR ++DQR +QR RQLDL    + S+Q +AAA RR+ APQWCS+L  +   G G         HRGFLFE+FE+R   G+E +LQAL SLL
Sbjct:  246 MRQIGSPLRTAEDAEMYLRGVKDQRSIQRERQLDLSRALESSRQSLAAARRRVGAPQWCSQLVYSGGGGGG---------HRGFLFEVFEIRRGLGDEGHLQALASLL 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64152.14001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQC9_ECTSI3.090e-2350.93SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64152contigH-elongata_contig64152:2178..2955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7FQC9
KEGG koko:K06674
KEGG Pathwayko04111,map04111
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0933@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.4051905-CDS-H-elongata_contig64152:2177..22431622931027.4051905-CDS-H-elongata_contig64152:2177..2243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64152 2178..2243 +
1691679667.6496763-CDS-H-elongata_contig64152:2177..22431691679667.6496763-CDS-H-elongata_contig64152:2177..2243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64152 2178..2243 +
1622931027.4282122-CDS-H-elongata_contig64152:2697..29551622931027.4282122-CDS-H-elongata_contig64152:2697..2955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64152 2698..2955 +
1691679667.6697378-CDS-H-elongata_contig64152:2697..29551691679667.6697378-CDS-H-elongata_contig64152:2697..2955Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64152 2698..2955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64152.14001.1prot_H-elongata_contig64152.14001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64152 2178..2955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64152.14001.1

>prot_H-elongata_contig64152.14001.1 ID=prot_H-elongata_contig64152.14001.1|Name=mRNA_H-elongata_contig64152.14001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MKHIGSPLRAPDEMDKYLREIEDQRDLQRSRQLDLSRELQRSQQHVAAAT
RRIRAPQWCSRLFANSAAGVGTGDSDCSGRHRGFLFELFELRNEPGEEKY
LQALGSLL
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mRNA from alignment at H-elongata_contig64152:2178..2955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64152.14001.1 ID=mRNA_H-elongata_contig64152.14001.1|Name=mRNA_H-elongata_contig64152.14001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at H-elongata_contig64152:2178..2955+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCATATAGGGTCACCACTGCGCGCGCCGGATGAGATGGACAAATA
TCTACGAGAGATTGAGGTGACTTTTTCTCCCCCTGTCTTCTTCTCGGGCG
ACTGTCTGACGAGTCCCCGGGATCATCGACAACGGCGGAGGCAGTTAAAG
GAAACGAAGCCTCCTCGCGCGAGATATCTGCCAATCTCGCAAGAGAAGTA
AAAAATACTCGTGAAAGAACAACGCGTTTCTTTCAAGACCACGGTAGCGC
GACCTTATCTCTTGATTCCAGGCTGCGAAAGGGACGGAAGCTTCCCTACG
AACCGGAGTGTAGATATAATTCTATCGTCTGGACGGCGCTCACATCGGTT
TATCGTTGAGGACACTGCACCACTCCTCTTCCTGATCTTCCCATTGCAAT
GATGTGATCCCCACACACACACACACACTGCCTTCGCCCCCTCTTTTCTT
TCCCCTCTCTCTCTCGCGGCGCCCTCCGCGCGTCGGCAACCTATCATGTT
GCCCTTTGACGCTGACGCAGGACCAACGAGACCTTCAGCGTTCGCGCCAG
CTGGATCTGTCTCGAGAGCTGCAGCGCTCGCAGCAGCATGTGGCCGCGGC
GACGCGGCGCATCAGAGCCCCGCAGTGGTGCTCCCGGCTTTTCGCAAACA
GCGCCGCCGGCGTCGGCACGGGGGACAGCGACTGCAGCGGTCGTCACAGA
GGGTTTCTTTTCGAACTGTTTGAGCTTCGGAATGAACCGGGCGAAGAAAA
ATACCTTCAGGCTCTGGGTTCGCTGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig64152:2178..2955+

>mRNA_H-elongata_contig64152.14001.1 ID=mRNA_H-elongata_contig64152.14001.1|Name=mRNA_H-elongata_contig64152.14001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig64152:2178..2955+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCATATAGGGTCACCACTGCGCGCGCCGGATGAGATGGACAAATA
TCTACGAGAGATTGAGATGAAGCATATAGGGTCACCACTGCGCGCGCCGG
ATGAGATGGACAAATATCTACGAGAGATTGAGGACCAACGAGACCTTCAG
CGTTCGCGCCAGCTGGATCTGTCTCGAGAGCTGCAGCGCTCGCAGCAGCA
TGTGGCCGCGGCGACGCGGCGCATCAGAGCCCCGCAGTGGTGCTCCCGGC
TTTTCGCAAACAGCGCCGCCGGCGTCGGCACGGGGGACAGCGACTGCAGC
GGTCGTCACAGAGGGTTTCTTTTCGAACTGTTTGAGCTTCGGAATGAACC
GGGCGAAGAAAAATACCTTCAGGCTCTGGGTTCGCTGCTAGACCAACGAG
ACCTTCAGCGTTCGCGCCAGCTGGATCTGTCTCGAGAGCTGCAGCGCTCG
CAGCAGCATGTGGCCGCGGCGACGCGGCGCATCAGAGCCCCGCAGTGGTG
CTCCCGGCTTTTCGCAAACAGCGCCGCCGGCGTCGGCACGGGGGACAGCG
ACTGCAGCGGTCGTCACAGAGGGTTTCTTTTCGAACTGTTTGAGCTTCGG
AATGAACCGGGCGAAGAAAAATACCTTCAGGCTCTGGGTTCGCTGCTA
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