mRNA_H-elongata_contig64101.13999.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64101.13999.1
Unique NamemRNA_H-elongata_contig64101.13999.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64101.13999.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 6.880e-48
Identity = 92/212 (43.40%), Postives = 120/212 (56.60%), Query Frame = 1 
Query:    1 EWTSPGKGIFMDSTGEPKSGTTWTERIITELALHLCGSESNKWCLMGGLAVFPRKPDPAYIWEMLYADTG----ELFLHFDGRIKHSIPGFR--VEKQCVPKGNYHPRGFARKYPCDERDEPSREQLLGCLPLETSQCASLYPSRYPDVRRMAVVFRDPRDVVISSHRYRTETVVVAKQRVEHDLLEFIDHYFEVGADQLSP-YVFHPRDLI 615
            E+   G G+ + + GEPKSGTTW  R++  LA+ LCGSE+N WC +GG+ VFP  P P+Y +E+L   T      LFLHF GRIKH IPG    +  +C   G  H  GF    PCD  + P+RE+L  CL   T +C +   S  P VRR  V+FRDPRDVVIS ++ RT+            L EF+   FEV    L   Y++H  DL+
Sbjct:  103 EFGERGHGLSLVALGEPKSGTTWLGRMVPSLAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTPTGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLM 314
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BLAST of mRNA_H-elongata_contig64101.13999.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.340e-28
Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 1 
Query:   82 ITELALHLCGSESNKWCLMGGLAVFPRKPDPAYIWEMLYADTGE-----LFLHFDGRIKHSIPGFRVE---KQCVPKGNYHPRGFARKYPCDERDEPSREQLLGCLPLETSQCASLYPSRYPDVRRMAVVFRDPRDVVISSHRYRTE 498
            + +LAL LCGS +N WC MGGLAV+P +P P Y +E+L   TGE     LFLH+ G  KH IPG   +   + C   G  H   F    PC      +REQL GCL   +S+C    PS   + RR AV+ RDPRDVV+S  R R +
Sbjct:    1 MPQLALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCLWNTSSRCMGFVPS---ESRRTAVMLRDPRDVVLSEFRMRRD 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64101.13999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L183_9PHAE6.880e-4843.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLX3_9PHAE5.340e-2844.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64101contigH-elongata_contig64101:76..2050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size615
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64101.13999.1prot_H-elongata_contig64101.13999.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64101 106..2050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.1554034-UTR-H-elongata_contig64101:75..1051622931027.1554034-UTR-H-elongata_contig64101:75..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64101 76..105 +
1691679667.560666-UTR-H-elongata_contig64101:75..1051691679667.560666-UTR-H-elongata_contig64101:75..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64101 76..105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.192876-CDS-H-elongata_contig64101:105..2031622931027.192876-CDS-H-elongata_contig64101:105..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 106..203 +
1691679667.5703702-CDS-H-elongata_contig64101:105..2031691679667.5703702-CDS-H-elongata_contig64101:105..203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 106..203 +
1622931027.2116787-CDS-H-elongata_contig64101:856..9591622931027.2116787-CDS-H-elongata_contig64101:856..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 857..959 +
1691679667.5809562-CDS-H-elongata_contig64101:856..9591691679667.5809562-CDS-H-elongata_contig64101:856..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 857..959 +
1622931027.2312906-CDS-H-elongata_contig64101:1260..14631622931027.2312906-CDS-H-elongata_contig64101:1260..1463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 1261..1463 +
1691679667.5900514-CDS-H-elongata_contig64101:1260..14631691679667.5900514-CDS-H-elongata_contig64101:1260..1463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 1261..1463 +
1622931027.2456-CDS-H-elongata_contig64101:1869..20501622931027.2456-CDS-H-elongata_contig64101:1869..2050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 1870..2050 +
1691679667.6011646-CDS-H-elongata_contig64101:1869..20501691679667.6011646-CDS-H-elongata_contig64101:1869..2050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64101 1870..2050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64101.13999.1

>prot_H-elongata_contig64101.13999.1 ID=prot_H-elongata_contig64101.13999.1|Name=mRNA_H-elongata_contig64101.13999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MDSTGEPKSGTTWTERIITELALHLCGSESNKWCLMGGLAVFPRKPDPAY
IWEMLYADTGELFLHFDGRIKHSIPGFRVEKQCVPKGNYHPRGFARKYPC
DERDEPSREQLLGCLPLETSQCASLYPSRYPDVRRMAVVFRDPRDVVISS
HRYRTETVVVAKQRVEHDLLEFIDHYFEVGADQLSPYVFHPRDLI
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mRNA from alignment at H-elongata_contig64101:76..2050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64101.13999.1 ID=mRNA_H-elongata_contig64101.13999.1|Name=mRNA_H-elongata_contig64101.13999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-elongata_contig64101:76..2050+ (Himanthalia elongata Himel1 dioecious)
GAGTGGACGTCGCCTGGCAAAGGCATCTTCATGGACTCAACAGGAGAGCC
AAAGTCAGGCACGACATGGACGGAAAGGATTATAACGGAGCTTGCGCTAC
ACCTATGTGGCAGCGAATCAAACAAATGGTGAATGCTGGAGATGTTCATT
GAAGCAGCCATGGTAAATTATGGGAGTGCAACGTCGACTACGTTCCTTCT
CGCTATCCCTGAGTATCCTAATAAGATATTGGGATAATGGTCAAAGGAAC
GGTAGCGTCATATAACCTAGACTGCATCATAGACCTATCTCAAGGGGAAC
CCTTCCTCGTACCTCGTAGGCAACTTGACAACCACCAGCGCCAGAATAAA
CAATATTTATTCCGATTAGATTTAAATTTTGTACAAGTACTTAAAATGAA
ATTGTCTCTACATTATTATTAGTTCACAAGTATATGTGTCTGTGTGTATT
TGTTTTATTTTCACATAACCGCGCAATCCGTCCTTGTCATGCTATTATAG
TATTTTAGGCTCCTTGCATTGGTCTTCCCAAGTGTGTCTGATCATATATA
GCAGTATAGAATGGATCAACCGAATACGGTTGCCAGTCCTGCTTGTGGTC
AGCTGAACACAGAAAATATATTTTCCCTGTAACATTTCGTGCCTGCGAAT
TTGGTCTCGCGAGACAAGTTGTGCCGTCCCGTCTTGCGCCAGTCCGCTCA
TTCTCCCCACCCAAGATGAATCTAATATGTAGCGTCTTGTCTACCTCACT
TTCTGATATTGGCCTTAACAACATACAACAGGTGCCTGATGGGCGGACTC
GCAGTGTTTCCCAGGAAACCCGACCCTGCTTACATATGGGAGATGCTTTA
TGCAGATACAGGAGAGCTTTTTCTCCATTTCGATGTTAGTGACCAAGCGA
AAGGGGGCAATATCATGAGGTTGCTAACATGTTCTTGGAACCACATAGAG
TTTGGATGCATATACCTCTCCATCGTCGACTTGGGCTTGAATTCGCGTTT
TTTATGAAGGGTCATGCTTTGCACGACATGCGTCTAGTCTAGATATTCGT
AATATTGGATTTGATTCCCCGAGGCGGTCTCTCAATACTGAATCCGAGTC
ACTCTATGGAGGGACATCCTCAACATGTATGAGCCATGACCAGGCGTCAT
GTCTATTGTTTCCTCACGTTTCCATACTGTTCCAGGGGAGGATCAAGCAT
TCAATTCCTGGTTTCAGAGTGGAAAAGCAATGCGTGCCGAAGGGGAATTA
TCATCCAAGAGGGTTCGCGCGGAAATATCCCTGTGATGAACGTGACGAAC
CCTCTCGAGAGCAGCTTCTAGGCTGCCTTCCATTGGAGACGAGTCAGTGT
GCATCGCTCTATCCCTCTCGCTACCCGGACGTGCGACGGTAAGAGATTGT
GTCAAGTGGAGCAAAACTTCATCGCTGCTCGTAATATCCGCCAATATGAA
TGGAAACTACTTTGGACCCATGTTTCTTTTCCGGGCTTAAAGCAGGCGTC
CCCCTTTACACTCCCTACATTCAAAACGGTTTATCCAGGTCACGTTCAAA
CTTACAGCGAGATATATTTCTCATTTGGCTCGTCTTGAAAGTTGACGCGC
GGCTTTTGAACGAGAACGGCCAAGTGTTGACGTTACGGGCACTGCCACGG
CCACCTGTCACTCCCGAGTTGAAGCCTAAAGTCATAGGTGTAACCTCGTG
GCGCGACAAACCGTTCCGATACTTGACGATATGTATCATCACTGCAGCCT
TCTTCCCGCCCGTGTGTTCCCTGACGTTGCTCCCTATTCCCCAGAATGGC
CGTCGTGTTTCGAGATCCTCGGGATGTGGTAATCTCATCACATAGATACA
GGACGGAGACGGTGGTGGTAGCCAAGCAACGTGTCGAACACGACTTGTTG
GAATTCATCGACCACTATTTCGAGGTTGGTGCAGACCAATTATCTCCGTA
TGTATTTCATCCGCGTGATCTGATT
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Coding sequence (CDS) from alignment at H-elongata_contig64101:76..2050+

>mRNA_H-elongata_contig64101.13999.1 ID=mRNA_H-elongata_contig64101.13999.1|Name=mRNA_H-elongata_contig64101.13999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig64101:76..2050+ (Himanthalia elongata Himel1 dioecious)
ATGGACTCAACAGGAGAGCCAAAGTCAGGCACGACATGGACGGAAAGGAT
TATAACGGAGCTTGCGCTACACCTATGTGGCAGCGAATCAAACAAATGAT
GGACTCAACAGGAGAGCCAAAGTCAGGCACGACATGGACGGAAAGGATTA
TAACGGAGCTTGCGCTACACCTATGTGGCAGCGAATCAAACAAATGGTGC
CTGATGGGCGGACTCGCAGTGTTTCCCAGGAAACCCGACCCTGCTTACAT
ATGGGAGATGCTTTATGCAGATACAGGAGAGCTTTTTCTCCATTTCGATG
TGCCTGATGGGCGGACTCGCAGTGTTTCCCAGGAAACCCGACCCTGCTTA
CATATGGGAGATGCTTTATGCAGATACAGGAGAGCTTTTTCTCCATTTCG
ATGGGAGGATCAAGCATTCAATTCCTGGTTTCAGAGTGGAAAAGCAATGC
GTGCCGAAGGGGAATTATCATCCAAGAGGGTTCGCGCGGAAATATCCCTG
TGATGAACGTGACGAACCCTCTCGAGAGCAGCTTCTAGGCTGCCTTCCAT
TGGAGACGAGTCAGTGTGCATCGCTCTATCCCTCTCGCTACCCGGACGTG
CGACGGGGAGGATCAAGCATTCAATTCCTGGTTTCAGAGTGGAAAAGCAA
TGCGTGCCGAAGGGGAATTATCATCCAAGAGGGTTCGCGCGGAAATATCC
CTGTGATGAACGTGACGAACCCTCTCGAGAGCAGCTTCTAGGCTGCCTTC
CATTGGAGACGAGTCAGTGTGCATCGCTCTATCCCTCTCGCTACCCGGAC
GTGCGACGAATGGCCGTCGTGTTTCGAGATCCTCGGGATGTGGTAATCTC
ATCACATAGATACAGGACGGAGACGGTGGTGGTAGCCAAGCAACGTGTCG
AACACGACTTGTTGGAATTCATCGACCACTATTTCGAGGTTGGTGCAGAC
CAATTATCTCCGTATGTATTTCATCCGCGTGATCTGATTAATGGCCGTCG
TGTTTCGAGATCCTCGGGATGTGGTAATCTCATCACATAGATACAGGACG
GAGACGGTGGTGGTAGCCAAGCAACGTGTCGAACACGACTTGTTGGAATT
CATCGACCACTATTTCGAGGTTGGTGCAGACCAATTATCTCCGTATGTAT
TTCATCCGCGTGATCTGATT
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