mRNA_H-elongata_contig64041.13992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64041.13992.1
Unique NamemRNA_H-elongata_contig64041.13992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64041.13992.1 vs. uniprot
Match: D8LB61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB61_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 8.030e-63
Identity = 177/481 (36.80%), Postives = 222/481 (46.15%), Query Frame = 1 
Query:    1 ETLHLKRRAIAAALARSAFARVRGVAWDDIDIDWAMENYLSQAEHSVCTILGVNALGPSTAKHARSRGGVSNGPGPGAATEVSRNMTADPAEEGDFLMSSVFPLPPPKPPRYVKNGVFADNGASPAAPSVAAMTAAADAAVATPPSNPAYIPRDSSAPGRCFFPISIRP-----------------------VDGTARNDVSKPYDALDDAEGMEGIQGNDTDGDSVSTRTVDTRESNITQYKMTAAERSRAYKDIFRTGG-EKAKKRPRSPVERTPLRLPFPMAPGGSMCLPVASLNEMPPCGYNHDSQTESGSYCAWCMLTGLKCSGDCGASSGGDGAGSQGKEDIGGKRGVDPDFAC---------------APRHRDFRLPYEIMYDYQRDIFNSEVRQLGVRGTADAMGEFKSISSNVYLSKKPPAKDDGEGHRCHCKPPPDGQPGCTEGCSNRATNEECTSRTCGLVGSAQCDNR 1326
            E   +K +++ AALARSAF+++  ++W D+++DW   + L++AE     +L   A   + A+   S                     AD  E+ +  MS++FPLP PKP R+VK GVFA   A P   + AA +++   A  +PP   + I       G+       +P                                                                       QY MTAA R++AYK IFRTGG +K KKRPRSPV  TPL+LPFP  P G + L  A L E PPCG     QTE+GS  AW +L                     G E  GG  G D                     P HRDFRLPY+++YD     F  E+RQLG+R   DAM EF+ I+SNVYLSKKPPAKD GEGHRC C PP DG  GCTE CSNRAT EECT RTCGL G   C NR
Sbjct:    2 EIYRVKWKSVGAALARSAFSQLELLSWQDVNVDWCPGDRLAEAERRNSALLHAGA--GAKARDGGSXXXXXXXXXXXXXXXXXXXAEAD-GEQEELCMSALFPLPQPKPARFVKKGVFA---AEPGTATAAARSSSTVVAP-SPPRPHSTITEGEVLAGKLAADDDGKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYAMTAAARTKAYKGIFRTGGGDKPKKRPRSPVASTPLQLPFPRPPAG-VSLATADLEERPPCGSEEYVQTEAGSEWAWGLL---------------------GDEQDGGGGGXDVASXXXXXXXXXXXXNGESGGPGHRDFRLPYDVIYDCHYQRFLGEMRQLGMRSADDAMTEFQGITSNVYLSKKPPAKDVGEGHRCGCVPPSDGSAGCTEACSNRATFEECTKRTCGLGGKGVCGNR 453
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BLAST of mRNA_H-elongata_contig64041.13992.1 vs. uniprot
Match: A0A6H5KC59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC59_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.900e-40
Identity = 153/471 (32.48%), Postives = 190/471 (40.34%), Query Frame = 1 
Query:    1 ETLHLKRRAIAAALARSAFARVRGVAWDDIDIDWAMENYLSQAEHSVCTILGVNALGPSTAKHARSRGGVSNGPGPGAATEVSRNMTADPAEEG-DFLMSSVFPLPPPKPPRYVKNGVFADNGASPAAPSVAAMTAAADAAVATPPSNPAYIPRDSSAPGRCF-------------------------FPISIRPVDGTARNDVSKPYDALDDAEGMEGIQGNDTDGDSVSTRTVDTRESNITQYKMTAAERSRAYKDIFRTGG-EKAKKRPRSPVERTPLRLPFPMAPGGSMCLPVASLNEMPPCGYNHDSQTESGSYCAWCMLTGLKCSGDCGASSGGDGAGSQGKEDIGGKRGVDPDFACAPRHRDFRLPYEIMYDYQRDIFNSEVRQLGVRGTADAMGEFKSISSNVYLSKKPPAKDDGEGHRCHCKPPPDGQPGCTEGCSNR--ATNEECTSRTCGLVGSAQCDNR 1326
            E   +KR+++ AALARSAF+++  ++W+D+++DW     L++AE     +LG                                           +  MS++FPLP PKP R+VK GVFA      A P  A   A + + V   PS P  +P  +   G                                                                                   QY MTAA R++AYK IFRTGG +K KKRPRSPV  TPL LPFP  P G + L  A L E PPCG     QTE+GS  AW +L G K  G      GGDG  + G                 PRH DFRLPY+++YD     F  E+RQLG+R   DAM EF  I+SNVYLSKK                          G   R  AT EECT RTCGL G   C NR
Sbjct:  234 EMYRVKRKSVGAALARSAFSQLELLSWEDVNVDWCPAERLAEAERRNSALLGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELCMSALFPLPQPKPARFVKKGVFA------AEPGTATADARSSSTVVA-PSPP--LPHSTITEGEVLAGKLAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYAMTAAARTKAYKGIFRTGGGDKPKKRPRSPVASTPLHLPFPRPPAG-VSLATADLEERPPCGSEEYVQTEAGSEWAWGLL-GDKQDG------GGDGDVASGXXXXXXXXXXXXXXXGGPRHGDFRLPYDVIYDCHYQRFLGEMRQLGMRSADDAMTEFHGITSNVYLSKKE-----------------------LRGSKQRVWATFEECTKRTCGLGGKGVCGNR 664
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64041.13992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB61_ECTSI8.030e-6336.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC59_9PHAE8.900e-4032.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64041contigH-elongata_contig64041:1200..2947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue3.3e-61
Seed eggNOG ortholog2880.D8LB61
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0000003,GO:0001704,GO:0001705,GO:0001708,GO:0001712,GO:0001715,GO:0002119,GO:0002164,GO:0003006,GO:0006355,GO:0006357,GO:0007275,GO:0007369,GO:0007398,GO:0007548,GO:0007610,GO:0008150,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010668,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0022414,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032501,GO:0032502,GO:0032504,GO:0035295,GO:0040008,GO:0040011,GO:0040014,GO:0045138,GO:0045165,GO:0045893,GO:0045935,GO:0045944,GO:0046661,GO:0048513,GO:0048518,GO:0048522,GO:0048565,GO:0048566,GO:0048568,GO:0048598,GO:0048609,GO:0048638,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0055123,GO:0060255,GO:0060795,GO:0065007,GO:0080090,GO:0090598,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG1083@2759
EC2.1.1.43
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size1326
Cds size1326
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.459965-CDS-H-elongata_contig64041:1199..23661622931026.459965-CDS-H-elongata_contig64041:1199..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64041 1200..2366 +
1691679667.1996322-CDS-H-elongata_contig64041:1199..23661691679667.1996322-CDS-H-elongata_contig64041:1199..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64041 1200..2366 +
1622931026.48346-CDS-H-elongata_contig64041:2788..29471622931026.48346-CDS-H-elongata_contig64041:2788..2947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64041 2789..2947 +
1691679667.2155554-CDS-H-elongata_contig64041:2788..29471691679667.2155554-CDS-H-elongata_contig64041:2788..2947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64041 2789..2947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64041.13992.1prot_H-elongata_contig64041.13992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64041 1200..2947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64041.13992.1

>prot_H-elongata_contig64041.13992.1 ID=prot_H-elongata_contig64041.13992.1|Name=mRNA_H-elongata_contig64041.13992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=442bp
ETLHLKRRAIAAALARSAFARVRGVAWDDIDIDWAMENYLSQAEHSVCTI
LGVNALGPSTAKHARSRGGVSNGPGPGAATEVSRNMTADPAEEGDFLMSS
VFPLPPPKPPRYVKNGVFADNGASPAAPSVAAMTAAADAAVATPPSNPAY
IPRDSSAPGRCFFPISIRPVDGTARNDVSKPYDALDDAEGMEGIQGNDTD
GDSVSTRTVDTRESNITQYKMTAAERSRAYKDIFRTGGEKAKKRPRSPVE
RTPLRLPFPMAPGGSMCLPVASLNEMPPCGYNHDSQTESGSYCAWCMLTG
LKCSGDCGASSGGDGAGSQGKEDIGGKRGVDPDFACAPRHRDFRLPYEIM
YDYQRDIFNSEVRQLGVRGTADAMGEFKSISSNVYLSKKPPAKDDGEGHR
CHCKPPPDGQPGCTEGCSNRATNEECTSRTCGLVGSAQCDNR
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mRNA from alignment at H-elongata_contig64041:1200..2947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64041.13992.1 ID=mRNA_H-elongata_contig64041.13992.1|Name=mRNA_H-elongata_contig64041.13992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1748bp|location=Sequence derived from alignment at H-elongata_contig64041:1200..2947+ (Himanthalia elongata Himel1 dioecious)
GAAACTCTTCACCTCAAGCGAAGAGCGATCGCCGCGGCGCTTGCGCGCTC
GGCCTTCGCCAGGGTGAGGGGGGTCGCCTGGGATGACATTGACATCGACT
GGGCCATGGAGAACTACCTTTCTCAGGCAGAACACAGTGTGTGCACCATT
TTAGGAGTGAATGCGCTCGGTCCGTCAACTGCAAAGCACGCACGAAGTCG
TGGAGGTGTATCGAACGGGCCGGGACCTGGGGCTGCGACAGAGGTGTCGC
GAAACATGACCGCAGATCCGGCAGAGGAAGGAGATTTCCTCATGAGCTCG
GTCTTCCCTCTCCCCCCGCCGAAGCCTCCGCGGTACGTGAAGAACGGTGT
ATTCGCAGACAATGGAGCGTCACCTGCAGCACCTTCGGTGGCCGCAATGA
CCGCGGCAGCAGACGCTGCGGTGGCAACACCACCGTCCAACCCGGCTTAC
ATTCCGCGCGACAGCTCGGCTCCAGGCCGATGCTTTTTCCCGATTTCTAT
TCGACCCGTCGACGGAACAGCTCGGAACGATGTATCGAAGCCTTACGATG
CGTTGGATGATGCTGAAGGGATGGAAGGTATCCAGGGAAACGACACGGAC
GGAGACTCTGTCTCCACCAGGACGGTGGACACGAGAGAGAGCAACATAAC
GCAATACAAAATGACTGCCGCAGAGAGGTCTCGGGCGTACAAAGACATAT
TTCGGACCGGAGGGGAGAAAGCGAAGAAGCGTCCCCGCAGCCCCGTGGAG
AGGACCCCGTTAAGGCTTCCGTTTCCAATGGCGCCGGGAGGAAGCATGTG
CTTACCAGTGGCAAGCTTGAACGAAATGCCGCCATGTGGATACAACCATG
ATTCACAGACCGAATCGGGTTCGTATTGCGCGTGGTGCATGTTGACTGGT
CTGAAGTGCTCCGGCGATTGTGGTGCGAGCAGCGGTGGTGACGGGGCAGG
AAGCCAGGGCAAGGAGGACATCGGAGGCAAGCGCGGCGTTGACCCCGATT
TCGCGTGTGCTCCACGACACCGGGACTTCCGCCTACCTTACGAAATTATG
TACGATTACCAGCGCGATATTTTCAACAGCGAGGTGCGGCAGCTTGGTGT
GCGGGGCACCGCGGATGCCATGGGAGAGTTCAAGAGTATTTCTTCGAACG
TCTATCTCAGCAAGAAGGTACGATACGGTACCCGTACGACCTAGAAACTG
CTGAACTCACGTGATCCAAACGTGCGCGTTTTGTTCAGAGTGGCAGAGTT
GACGAATACATCCTGCGCTGTGGTCGTGCCGTGTCGATGGTCGCGAGGAG
TCGTTTCGTTTCGTCCAATTGAAGTTTTGCGTGTTTTGCTAGGGCATATA
TCTGCCTTCCTGCGATTCAGCTGGAAATTCACGACGTGAGTGTGGTTCTG
CACCGCGCGCTATCGCGGCAATCCAATGTTTCCATCACCCGTCAAGCGCC
TCTGCAGGGAGAATTGCATGAATCATCGTTGAAGACGGCGACAGATAGAT
ATAACAGCACTAGCTAGTAAGGGTAAAATGCATTTCAGAACCCTGTCGCG
ATGTCTCGACCCGATTACGCATTTCTCCCCTCCACGCAGCCCCCAGCCAA
GGACGACGGTGAGGGCCACAGGTGCCACTGCAAGCCGCCCCCCGATGGCC
AACCCGGCTGCACAGAGGGATGCTCGAACAGGGCCACGAACGAGGAGTGC
ACGTCGCGCACGTGCGGGCTGGTAGGAAGCGCCCAGTGTGATAACCGG
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Coding sequence (CDS) from alignment at H-elongata_contig64041:1200..2947+

>mRNA_H-elongata_contig64041.13992.1 ID=mRNA_H-elongata_contig64041.13992.1|Name=mRNA_H-elongata_contig64041.13992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2652bp|location=Sequence derived from alignment at H-elongata_contig64041:1200..2947+ (Himanthalia elongata Himel1 dioecious)
GAAACTCTTCACCTCAAGCGAAGAGCGATCGCCGCGGCGCTTGCGCGCTC
GGCCTTCGCCAGGGTGAGGGGGGTCGCCTGGGATGACATTGACATCGACT
GGGCCATGGAGAACTACCTTTCTCAGGCAGAACACAGTGTGTGCACCATT
TTAGGAGTGAATGCGCTCGGTCCGTCAACTGCAAAGCACGCACGAAGTCG
TGGAGGTGTATCGAACGGGCCGGGACCTGGGGCTGCGACAGAGGTGTCGC
GAAACATGACCGCAGATCCGGCAGAGGAAGGAGATTTCCTCATGAGCTCG
GTCTTCCCTCTCCCCCCGCCGAAGCCTCCGCGGTACGTGAAGAACGGTGT
ATTCGCAGACAATGGAGCGTCACCTGCAGCACCTTCGGTGGCCGCAATGA
CCGCGGCAGCAGACGCTGCGGTGGCAACACCACCGTCCAACCCGGCTTAC
ATTCCGCGCGACAGCTCGGCTCCAGGCCGATGCTTTTTCCCGATTTCTAT
TCGACCCGTCGACGGAACAGCTCGGAACGATGTATCGAAGCCTTACGATG
CGTTGGATGATGCTGAAGGGATGGAAGGTATCCAGGGAAACGACACGGAC
GGAGACTCTGTCTCCACCAGGACGGTGGACACGAGAGAGAGCAACATAAC
GCAATACAAAATGACTGCCGCAGAGAGGTCTCGGGCGTACAAAGACATAT
TTCGGACCGGAGGGGAGAAAGCGAAGAAGCGTCCCCGCAGCCCCGTGGAG
AGGACCCCGTTAAGGCTTCCGTTTCCAATGGCGCCGGGAGGAAGCATGTG
CTTACCAGTGGCAAGCTTGAACGAAATGCCGCCATGTGGATACAACCATG
ATTCACAGACCGAATCGGGTTCGTATTGCGCGTGGTGCATGTTGACTGGT
CTGAAGTGCTCCGGCGATTGTGGTGCGAGCAGCGGTGGTGACGGGGCAGG
AAGCCAGGGCAAGGAGGACATCGGAGGCAAGCGCGGCGTTGACCCCGATT
TCGCGTGTGCTCCACGACACCGGGACTTCCGCCTACCTTACGAAATTATG
TACGATTACCAGCGCGATATTTTCAACAGCGAGGTGCGGCAGCTTGGTGT
GCGGGGCACCGCGGATGCCATGGGAGAGTTCAAGAGTATTTCTTCGAACG
TCTATCTCAGCAAGAAGGAAACTCTTCACCTCAAGCGAAGAGCGATCGCC
GCGGCGCTTGCGCGCTCGGCCTTCGCCAGGGTGAGGGGGGTCGCCTGGGA
TGACATTGACATCGACTGGGCCATGGAGAACTACCTTTCTCAGGCAGAAC
ACAGTGTGTGCACCATTTTAGGAGTGAATGCGCTCGGTCCGTCAACTGCA
AAGCACGCACGAAGTCGTGGAGGTGTATCGAACGGGCCGGGACCTGGGGC
TGCGACAGAGGTGTCGCGAAACATGACCGCAGATCCGGCAGAGGAAGGAG
ATTTCCTCATGAGCTCGGTCTTCCCTCTCCCCCCGCCGAAGCCTCCGCGG
TACGTGAAGAACGGTGTATTCGCAGACAATGGAGCGTCACCTGCAGCACC
TTCGGTGGCCGCAATGACCGCGGCAGCAGACGCTGCGGTGGCAACACCAC
CGTCCAACCCGGCTTACATTCCGCGCGACAGCTCGGCTCCAGGCCGATGC
TTTTTCCCGATTTCTATTCGACCCGTCGACGGAACAGCTCGGAACGATGT
ATCGAAGCCTTACGATGCGTTGGATGATGCTGAAGGGATGGAAGGTATCC
AGGGAAACGACACGGACGGAGACTCTGTCTCCACCAGGACGGTGGACACG
AGAGAGAGCAACATAACGCAATACAAAATGACTGCCGCAGAGAGGTCTCG
GGCGTACAAAGACATATTTCGGACCGGAGGGGAGAAAGCGAAGAAGCGTC
CCCGCAGCCCCGTGGAGAGGACCCCGTTAAGGCTTCCGTTTCCAATGGCG
CCGGGAGGAAGCATGTGCTTACCAGTGGCAAGCTTGAACGAAATGCCGCC
ATGTGGATACAACCATGATTCACAGACCGAATCGGGTTCGTATTGCGCGT
GGTGCATGTTGACTGGTCTGAAGTGCTCCGGCGATTGTGGTGCGAGCAGC
GGTGGTGACGGGGCAGGAAGCCAGGGCAAGGAGGACATCGGAGGCAAGCG
CGGCGTTGACCCCGATTTCGCGTGTGCTCCACGACACCGGGACTTCCGCC
TACCTTACGAAATTATGTACGATTACCAGCGCGATATTTTCAACAGCGAG
GTGCGGCAGCTTGGTGTGCGGGGCACCGCGGATGCCATGGGAGAGTTCAA
GAGTATTTCTTCGAACGTCTATCTCAGCAAGAAGCCCCCAGCCAAGGACG
ACGGTGAGGGCCACAGGTGCCACTGCAAGCCGCCCCCCGATGGCCAACCC
GGCTGCACAGAGGGATGCTCGAACAGGGCCACGAACGAGGAGTGCACGTC
GCGCACGTGCGGGCTGGTAGGAAGCGCCCAGTGTGATAACCGGCCCCCAG
CCAAGGACGACGGTGAGGGCCACAGGTGCCACTGCAAGCCGCCCCCCGAT
GGCCAACCCGGCTGCACAGAGGGATGCTCGAACAGGGCCACGAACGAGGA
GTGCACGTCGCGCACGTGCGGGCTGGTAGGAAGCGCCCAGTGTGATAACC
GG
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