mRNA_H-elongata_contig6404.13991.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6404.13991.1
Unique NamemRNA_H-elongata_contig6404.13991.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6404.13991.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.060e-13
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  109 AFMSAFKKIPLHTTTLRNLGNFKAALLGG--VKKIAGISKPRGFHLVKDGEQQVTVGMKEF 285
            AF +A+K +P+HTTTLRNLGNFK     G  V+ I GI+K R F L+KDG  QVTVGMKE+
Sbjct:   15 AFSAAYKTLPVHTTTLRNLGNFKGVFPPGPVVRNIHGITKSRAFQLLKDGPSQVTVGMKEY 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6404.13991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE3.060e-1360.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6404contigH-elongata_contig6404:111..1766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size286
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6404.13991.1prot_H-elongata_contig6404.13991.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6404 111..281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.3799932-CDS-H-elongata_contig6404:110..2811622931026.3799932-CDS-H-elongata_contig6404:110..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6404 111..281 -
1691679667.1583092-CDS-H-elongata_contig6404:110..2811691679667.1583092-CDS-H-elongata_contig6404:110..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6404 111..281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931026.3952143-UTR-H-elongata_contig6404:281..3421622931026.3952143-UTR-H-elongata_contig6404:281..342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6404 282..342 -
1691679667.1738071-UTR-H-elongata_contig6404:281..3421691679667.1738071-UTR-H-elongata_contig6404:281..342Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6404 282..342 -
1622931026.4095192-UTR-H-elongata_contig6404:1713..17661622931026.4095192-UTR-H-elongata_contig6404:1713..1766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6404 1714..1766 -
1691679667.1889536-UTR-H-elongata_contig6404:1713..17661691679667.1889536-UTR-H-elongata_contig6404:1713..1766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6404 1714..1766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6404.13991.1

>prot_H-elongata_contig6404.13991.1 ID=prot_H-elongata_contig6404.13991.1|Name=mRNA_H-elongata_contig6404.13991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MSAFKKIPLHTTTLRNLGNFKAALLGGVKKIAGISKPRGFHLVKDGEQQV
TVGMKEF
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mRNA from alignment at H-elongata_contig6404:111..1766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6404.13991.1 ID=mRNA_H-elongata_contig6404.13991.1|Name=mRNA_H-elongata_contig6404.13991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1656bp|location=Sequence derived from alignment at H-elongata_contig6404:111..1766- (Himanthalia elongata Himel1 dioecious)
CAGATTTGCTGGAGATGCATCGCGTGCTTACAAAGCTTGGCCGGTGATTT
CTGGTGAGCACTTACCTTTGCGCCACATGTGCTGCAACTGATGCAGGCTC
TCTTGAACGCCTCGAGTCCTCACTAGACCCGTGTTGTAACGATGAACACT
ACCTCTGTGATGCCTATATGCTGTAACTGGTGAAGGCGCACGTGCTCGAG
CTGGTGCAGGCTCAACTGTACATAATGCAATCTACGACGCCTCGACAGCA
ATATGGACGCGTAGATGCAACGTTCTCTTGACAACGGTACACGGCCAAGA
CACACTCGATCACTAGTGCAGATAAACCACGTTATCAATATGATATGTCA
ATAGCTGAGTCGCTGCCCAAAATCTCGACTTCAACGCACACTTGAATATT
CCAAACTTTACAGCCCTGTAGCCACTAACAGTCCCGTAGTTGCTTCAGAT
TAACAACCCCGAAGATTCCTGATATGTGTAACGCCCTAAAGTCGATGATT
TTTCATGCATTAGCGTATGTTATTATACGGCATTTTGTGGCTGCGAAGGC
TGGCGCAGCTTGCTGTTAAGATATCGGAGCAATGCGCAAGGTGAACAGCA
ACAAATTATCGTGATTTCGATAGGGACAAAGAACAAGATGTTGATGATTC
TCCCCCTGCTCAGTATAAAACATATATCTTGTTACTAGATCGCCAAGAAC
AGTATTAACACAGTTTCGGTGAAATTCAAAACATTTTTTTTTAAGAACGG
GAGCTTATTTCTTAATTCCGTTCTAATTGCTACGTAGATTTAACCTCTGG
ATAGCTCAAACAAGAGCCTTGTCTCATGGGATTACAGAAATGTGTTTTAT
AAAATATTTGCCAATTGTTCCAGAATGGGCCAAAGGTACAATTCTAATGG
ACAGCGCTGTTTTCCACAATGATTGAAAAACACTAGAAAATGCCCTCCCA
GTTCCGAAAATTAACGGATCGAGTTGAAAACTGGTTACATTCGTTCTCTT
GGTAAGGTCTTTCGTTTAAGCTATCGTGAGCTTAAATCCGTGTAGCAGTC
CGAACAAGAGGAAGAAATAATCTCCCGTTCTTAAAAAACCCGCTGATCTT
AAGTTCACAAAAACTTGTATTATTATTGAAACCATCCTGAGGACAGTGTC
TACACCACCTACTCTTCCTCCCAAAATATTCCAGACTAAGCGATGCGATC
ACTAAACGAAATCAGGTATGACAGTAACGAAACATTCACATGGATGCACG
CGGCAACGGGCACCATTGTTGGCAAAGCCTTCGCTAGAATGTATGGCGAA
TGTCGCTATATCTATCAGACAAAACACGAGGTTGAGGTTGTGCGTGCTTT
CTCTCTTTTCTAGCTGGCCTGTTATGACCCATTCCTCGCGCTTTTGGTTC
GTCGTCCCCTCTTTGGCATGCCAGACTTGGGCAAGGTTGCAAGGGTAAAG
ACCTCTTCACCAGGTTCGAGCAAGGGCAGGCCTTCATGTCTGCTTTCAAG
AAGATACCGTTGCACACTACTACCCTGCGGAACCTCGGGAACTTCAAAGC
CGCTCTCCTCGGAGGCGTGAAGAAAATAGCCGGAATCTCCAAGCCGCGAG
GTTTTCACCTGGTTAAAGACGGCGAACAGCAAGTAACGGTGGGCATGAAG
GAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig6404:111..1766-

>mRNA_H-elongata_contig6404.13991.1 ID=mRNA_H-elongata_contig6404.13991.1|Name=mRNA_H-elongata_contig6404.13991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig6404:111..1766- (Himanthalia elongata Himel1 dioecious)
ATGTCTGCTTTCAAGAAGATACCGTTGCACACTACTACCCTGCGGAACCT
CGGGAACTTCAAAGCCGCTCTCCTCGGAGGCGTGAAGAAAATAGCCGGAA
TCTCCAAGCCGCGAGGTTTTCACCTGGTTAAAGACGGCGAACAGCAAGTA
ACGGTGGGCATGAAGGAGTTCATGTCTGCTTTCAAGAAGATACCGTTGCA
CACTACTACCCTGCGGAACCTCGGGAACTTCAAAGCCGCTCTCCTCGGAG
GCGTGAAGAAAATAGCCGGAATCTCCAAGCCGCGAGGTTTTCACCTGGTT
AAAGACGGCGAACAGCAAGTAACGGTGGGCATGAAGGAGTTC
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