mRNA_H-elongata_contig63950.13980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63950.13980.1
Unique NamemRNA_H-elongata_contig63950.13980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: D8LIT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT7_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.670e-47
Identity = 80/121 (66.12%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWG N VGQLGLG +S RG++A+ MGD L  V+LG  F A GVTCGLDH+CAW+  G +KCWGGNAYGQLG  DT +RGN+T SMGDNL  + LG G TA+  VAANHFTCVLL DET+K
Sbjct:   93 KCWGANAVGQLGLGHTSSRGTTAAQMGDTLGVVNLGTDFFALGVTCGLDHSCAWNNAGNVKCWGGNAYGQLGLEDTTNRGNSTVSMGDNLPYVDLGDGDTAVEVVAANHFTCVLLHDETVK 213          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A6H5JH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH00_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.610e-41
Identity = 78/148 (52.70%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQ---------------------------LGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWG N VGQLGLG ++ RG++A+ MGD L  V+LG  F A GV+CGLDH+CAW+  G +KCWGGNAYGQ                           LG  DT +RGN+T SMGDNL  + LG G TA+  VAANHFTCVLL DET+K
Sbjct:   93 KCWGANAVGQLGLGHTNSRGTTAAQMGDTLGVVNLGTDFFALGVSCGLDHSCAWNNAGNVKCWGGNAYGQVVIADIVSLIVILSCPRCILVFCCIWQLGLEDTTNRGNSTVSMGDNLPYVDLGDGDTAVEVVAANHFTCVLLHDETVK 240          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A6H5JPT1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.280e-36
Identity = 67/120 (55.83%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    4 CWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            CWG+N  GQLGLGD+  RG+S+S MG+ L  VDLG G  A  + CG  HTCA    G LKCWG N YG LG GDT DRG T D+MGD L  + LGTG TAL   A  H TC +L++E +K
Sbjct:   36 CWGFNEYGQLGLGDTQHRGTSSSDMGEGLAVVDLGTGRTATHIACGQYHTCAILDIGSLKCWGRNNYGALGLGDTDDRGQTNDTMGDQLPSVDLGTGHTALAVAAGRHHTCAILNNEALK 155          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A017SY21_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017SY21_9DELT)

HSP 1 Score: 137 bits (346), Expect = 2.050e-35
Identity = 66/121 (54.55%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWGYN  GQLGLG  + RG+S S MG+NLP V+LG G  A  V+ G  +TCA   +G +KCWG N YGQLG GDT +RG  + SMGDNL  ++LGTG TA    A    TC +L+D TIK
Sbjct:  466 KCWGYNTYGQLGLGSPASRGTSPSDMGNNLPAVNLGTGKTATLVSAGSQYTCAVLNDGSVKCWGNNDYGQLGLGDTFNRGTGSTSMGDNLPVVNLGTGKTATLVSAGGRHTCAVLNDSTIK 586          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 7.320e-35
Identity = 64/121 (52.89%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWGYNN GQLGLGD+S RG     MGD LP + LG G  A  ++ G  HTCA    G +KCWG NAYGQLG GDT DRG+    MGD L  + LGTG TA       + TC LL + +IK
Sbjct:  124 KCWGYNNAGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTATAISVGGIHTCALLDNGSVKCWGYNAYGQLGLGDTSDRGDGPGEMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIK 244          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: D7FKP6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKP6_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.350e-34
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    4 CWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            CWG+N  GQLGLGD+  RG+S+S MG+ L  VDLG G  A  + CG  HTCA    G LKCWG N++G LG GDT +RG   D+MGDNL  + LGTG TAL      H TC +L +E +K
Sbjct:  134 CWGFNEYGQLGLGDTEHRGNSSSDMGEGLAVVDLGTGRTATHIACGQYHTCAILDIGALKCWGYNSFGALGLGDTDNRGEANDTMGDNLPFVDLGTGHTALAVSGGRHHTCAILDNEALK 253          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A7Z9UFE8_9BACT (Big_5 domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9UFE8_9BACT)

HSP 1 Score: 132 bits (331), Expect = 2.190e-33
Identity = 63/121 (52.07%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWG NN+GQLGLG++S RG ++S MGDNLP VDLG G  A  +  G  HTCA      +KCWG NA GQLG GDT +RG+ +  MGD L  + LG+G TA    A N  TC +L + +IK
Sbjct:  269 KCWGKNNLGQLGLGNTSNRGDNSSEMGDNLPVVDLGTGRTAKAIAAGDYHTCAILDNASIKCWGANASGQLGIGDTNNRGDESSEMGDILPAIDLGSGRTATAITAGNQHTCAILDNASIK 389          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A7C7JGX1_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JGX1_9FLAO)

HSP 1 Score: 127 bits (318), Expect = 6.030e-33
Identity = 59/121 (48.76%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWGYNN GQLGLGD+  RG     MG NL  ++LG    A  +  G  HTCA      +KCWG N YGQLG GDT  RG+    MGDNL+ ++LG   TA   VA  + TC L  + TIK
Sbjct:   12 KCWGYNNYGQLGLGDTVSRGDGPGEMGVNLQHIELGGNHTAKSIAAGESHTCALLDNNKIKCWGWNDYGQLGQGDTTSRGDGPGEMGDNLNPINLGENLTATSIVAGEYHTCALFDNNTIK 132          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: A0A2J7ZMN6_9CHLO (RCC1 and BTB domain-containing protein 2 n=2 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZMN6_9CHLO)

HSP 1 Score: 128 bits (322), Expect = 9.460e-33
Identity = 61/121 (50.41%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWG N   QLGLGDS  RGS++++MGD LP V+LG G  A  +  G  HTCA    G LKCWGGN YGQLG GDT  RG +   MGD L  + LGTG  A    A  H TC + +   +K
Sbjct:  277 KCWGNNGDYQLGLGDSKSRGSTSTNMGDALPYVNLGQGLTATSIAAGAAHTCAVLDNGALKCWGGNTYGQLGLGDTKSRGGSAADMGDALPNVDLGTGQQAKTVTAGLHSTCAVTASSNLK 397          
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Match: UPI0019D6AE8B (Ig-like domain-containing protein n=1 Tax=Myxococcus sp. SCHIC003 TaxID=2813577 RepID=UPI0019D6AE8B)

HSP 1 Score: 130 bits (327), Expect = 1.030e-32
Identity = 63/121 (52.07%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDHTCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGSTALHAVAANHFTCVLLSDETIK 363
            +CWG N+VGQLGLGD S RG +   MGD+LP +DLG G  A  V  G +H CA    G +KCWG N +GQLG GD  DRG+    MGD L R++LGTG TA    A    TC LL D+++K
Sbjct:  646 KCWGLNSVGQLGLGDMSNRGDAPDEMGDSLPWIDLGTGRTAKSVVSGSEHVCAILDNGEVKCWGRNDWGQLGLGDKQDRGDGPGEMGDALPRVNLGTGRTAKALAAGAVHTCALLDDDSVK 766          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63950.13980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT7_ECTSI1.670e-4766.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH00_9PHAE2.610e-4152.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPT1_9PHAE1.280e-3655.83Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A017SY21_9DELT2.050e-3554.55Uncharacterized protein n=2 Tax=Chondromyces apicu... [more]
A0A835T669_9CHLO7.320e-3552.89Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
D7FKP6_ECTSI1.350e-3453.33Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7Z9UFE8_9BACT2.190e-3352.07Big_5 domain-containing protein n=1 Tax=Candidatus... [more]
A0A7C7JGX1_9FLAO6.030e-3348.76Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A2J7ZMN6_9CHLO9.460e-3350.41RCC1 and BTB domain-containing protein 2 n=2 Tax=T... [more]
UPI0019D6AE8B1.030e-3252.07Ig-like domain-containing protein n=1 Tax=Myxococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63950contigH-elongata_contig63950:2421..3395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D8LIT7
Preferred nameRCCD1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.2764301-CDS-H-elongata_contig63950:2420..26301622931025.2764301-CDS-H-elongata_contig63950:2420..2630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63950 2421..2630 +
1691679666.6776617-CDS-H-elongata_contig63950:2420..26301691679666.6776617-CDS-H-elongata_contig63950:2420..2630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63950 2421..2630 +
1622931025.2928898-CDS-H-elongata_contig63950:3239..33951622931025.2928898-CDS-H-elongata_contig63950:3239..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63950 3240..3395 +
1691679666.698973-CDS-H-elongata_contig63950:3239..33951691679666.698973-CDS-H-elongata_contig63950:3239..3395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63950 3240..3395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63950.13980.1prot_H-elongata_contig63950.13980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63950 2421..3395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63950.13980.1

>prot_H-elongata_contig63950.13980.1 ID=prot_H-elongata_contig63950.13980.1|Name=mRNA_H-elongata_contig63950.13980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
QCWGYNNVGQLGLGDSSVRGSSASHMGDNLPEVDLGDGFVAAGVTCGLDH
TCAWSQEGMLKCWGGNAYGQLGYGDTLDRGNTTDSMGDNLHRLHLGTGST
ALHAVAANHFTCVLLSDETIK*
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mRNA from alignment at H-elongata_contig63950:2421..3395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63950.13980.1 ID=mRNA_H-elongata_contig63950.13980.1|Name=mRNA_H-elongata_contig63950.13980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig63950:2421..3395+ (Himanthalia elongata Himel1 dioecious)
CAGTGCTGGGGCTACAACAACGTCGGGCAGCTCGGGCTCGGTGACAGCTC CGTTCGAGGTTCGTCAGCGTCCCACATGGGTGATAACCTGCCTGAGGTCG ACCTCGGCGACGGCTTCGTGGCAGCTGGAGTGACATGCGGCTTAGACCAC ACTTGCGCCTGGAGCCAGGAGGGCATGCTCAAGTGCTGGGGAGGGAATGC CTACGGGCAGGTGCGCTCTTCGCTGCGAGCTGTAGCTGTTAGCGCTTCTT CATTTTATATTTTTAGTATTAATTTTATATTTTTTTAATATTATCTATTT TTGTTGTTTATTTCTTAAATAAAAGTTAAATGTTGCTGTAAGATTTGTAA GTGTTTTTTTTTATTATCAAGTACCAAGAGAACAAAGCCTTATAATTATG AAGTGTTGTATCAATGAAATAGATCATGAGATAGATAGATCGTTTTACTA TGAGATAGATCGTTTTACTTATGGGCCTTGGCGACGCAGCACTCAAAGTG CACGAGTTCGCAGCATGCTCATTCGTCTCTTGTCTCTTGCAATGCATGTA TTTGTATTTGCCTACCGACCAACATAAGAAGCAGTCGAGCAGTTACTTAC AGTCATAGTTGTCGATTGACAGGTTCTTGAGAGTGCGTCAAGGCGTCTTT TTGGAAAATATGCTAGTCTTAGTCTAGCCAAGTGTACTTGACGCATCTGT CAAGGGGGTGAACTCTTGCCAACCGAAAACTTTACTAAAGCGTGTTGTTT TATTCCCGCCGCTCTCCTCTAAAGCAAATGTATGTATTTTTGTCTTGTAT TTTCTGATGGCATGTGCAGCTCGGTTACGGTGACACGCTAGACCGTGGGA ACACCACCGACTCGATGGGTGACAATCTTCACCGACTGCACCTAGGGACG GGCTCCACCGCCCTTCATGCCGTGGCGGCGAACCACTTCACCTGCGTCTT GCTGTCCGATGAAACCATCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63950:2421..3395+

>mRNA_H-elongata_contig63950.13980.1 ID=mRNA_H-elongata_contig63950.13980.1|Name=mRNA_H-elongata_contig63950.13980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig63950:2421..3395+ (Himanthalia elongata Himel1 dioecious)
CAGTGCTGGGGCTACAACAACGTCGGGCAGCTCGGGCTCGGTGACAGCTC
CGTTCGAGGTTCGTCAGCGTCCCACATGGGTGATAACCTGCCTGAGGTCG
ACCTCGGCGACGGCTTCGTGGCAGCTGGAGTGACATGCGGCTTAGACCAC
ACTTGCGCCTGGAGCCAGGAGGGCATGCTCAAGTGCTGGGGAGGGAATGC
CTACGGGCAGCAGTGCTGGGGCTACAACAACGTCGGGCAGCTCGGGCTCG
GTGACAGCTCCGTTCGAGGTTCGTCAGCGTCCCACATGGGTGATAACCTG
CCTGAGGTCGACCTCGGCGACGGCTTCGTGGCAGCTGGAGTGACATGCGG
CTTAGACCACACTTGCGCCTGGAGCCAGGAGGGCATGCTCAAGTGCTGGG
GAGGGAATGCCTACGGGCAGCTCGGTTACGGTGACACGCTAGACCGTGGG
AACACCACCGACTCGATGGGTGACAATCTTCACCGACTGCACCTAGGGAC
GGGCTCCACCGCCCTTCATGCCGTGGCGGCGAACCACTTCACCTGCGTCT
TGCTGTCCGATGAAACCATCAAGTGACTCGGTTACGGTGACACGCTAGAC
CGTGGGAACACCACCGACTCGATGGGTGACAATCTTCACCGACTGCACCT
AGGGACGGGCTCCACCGCCCTTCATGCCGTGGCGGCGAACCACTTCACCT
GCGTCTTGCTGTCCGATGAAACCATCAAGTGA
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