mRNA_H-elongata_contig63946.13979.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63946.13979.1
Unique NamemRNA_H-elongata_contig63946.13979.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A6H5L4W2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4W2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 7.870e-27
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKK-----RRANHGFENTEARVRAIYIAHVFG 270
            LSVRTAFDLYLKAL+LPRGSLVVCS LTIPDMV+I  EHGLVP+PVDL+  TLAP+  ALEAEV                 + RVRAIY+AHVFG
Sbjct:  139 LSVRTAFDLYLKALDLPRGSLVVCSALTIPDMVTIFEEHGLVPVPVDLDPETLAPEPGALEAEVAMCGXXXXXXXXXXXXXKQRVRAIYVAHVFG 233
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A6G0XSB8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSB8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 9.290e-17
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L A+  PRGS V+CS +TIPDM+ ++  HGLVP+PVDL+ STLA + + LE  V  +             + I +AHVFG
Sbjct:   69 LSVRTGFDLFLHAMQFPRGSEVICSSITIPDMLKVIRHHGLVPVPVDLDESTLAMQQEVLERSVTPK------------TKFILVAHVFG 146
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A067CZ76_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ76_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 1.770e-16
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L+ +N P+GS ++CS +TIPDM+ +L+ HGLV +P+DL+ +TLA + + L A V  +             +AI +AH+FG
Sbjct:   69 LSVRTGFDLFLQTMNYPKGSEIICSSITIPDMIKVLHHHGLVAVPIDLDDTTLAMQTETLAAAVTDK------------TKAILVAHIFG 146
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: W4FK79_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FK79_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.420e-16
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L+A+  P+GS ++CS +TIPDM+ +++ HGLV +PVDL+ +TLA + D LE  V             A  + I +AHVFG
Sbjct:   69 LSVRTGFDLFLQAMAFPKGSEIICSSITIPDMLKVIHHHGLVAVPVDLDENTLAMQMDVLERSVT------------ANTKCILVAHVFG 146
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A024U5P1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U5P1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.620e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L+A+  P+GS ++CS +TIPDM+ +++ HGLV +PVDL+  TLA + D LE  V             A  + I +AHVFG
Sbjct:   69 LSVRTGFDLFLQAMAFPKGSEIICSSITIPDMLKVIHHHGLVAVPVDLDEDTLAMQMDVLEHSVT------------ANTKCILVAHVFG 146
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A024U6R7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6R7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.580e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L+A+  P+GS ++CS +TIPDM+ +++ HGLV +PVDL+  TLA + D LE  V             A  + I +AHVFG
Sbjct:   69 LSVRTGFDLFLQAMAFPKGSEIICSSITIPDMLKVIHHHGLVAVPVDLDEDTLAMQMDVLEHSVT------------ANTKCILVAHVFG 146
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A1V9ZQX6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQX6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.570e-15
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L+ +N P+GS ++CS +TIPDM+ +++ HGLV +P+DL+  TLA + + L   V  +             +AI +AH+FG
Sbjct:   69 LSVRTGFDLFLQTMNYPKGSEIICSSITIPDMIKVIHHHGLVAVPIDLDDKTLAMQTETLAQAVTDK------------TKAILVAHIFG 146
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A425DL39_9STRA (BSD domain-containing protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DL39_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.610e-15
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL+L+A+  P+GS ++CS +TIPDM+ +++ HGLV +PVDL+ +TLA + D LE      R+N          + I +AHVFG
Sbjct:  396 LSVRTGFDLFLQAMAFPKGSEIICSSITIPDMLKVIHHHGLVAVPVDLDENTLAMQMDVLE------RSN---------TKCILVAHVFG 470
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A2D9Z5W9_9BACT (Uncharacterized protein n=3 Tax=Planctomycetia TaxID=203683 RepID=A0A2D9Z5W9_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 4.160e-15
Identity = 42/90 (46.67%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL L+AL LPRGS ++ S LTI  M++I+ EHGLV +PVDL++ TLAPKA+ +E+ +  +             + + +AH+FG
Sbjct:   46 LSVRTGFDLLLQALALPRGSEIIVSALTIEGMLTIIEEHGLVAVPVDLDIDTLAPKAEQIESLITDK------------TKLVLVAHLFG 123
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BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Match: A0A5D6XK69_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XK69_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.460e-15
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLELSTLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG 270
            LSVRT FDL L+ L LPRGS V+CS +TIPDM+ +L  HGLV +P+DL+  TLA  ADAL      RRA        A  RA+ I +VFG
Sbjct:   84 LSVRTGFDLLLQTLKLPRGSEVLCSAVTIPDMLYLLRYHGLVAVPIDLDPQTLAVDADAL------RRA------ATANTRAMLITYVFG 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63946.13979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4W2_9PHAE7.870e-2766.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6G0XSB8_9STRA9.290e-1748.89Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CZ76_SAPPC1.770e-1644.44Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
W4FK79_9STRA2.420e-1646.67Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024U5P1_9STRA3.620e-1646.67Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024U6R7_9STRA4.580e-1646.67Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9ZQX6_9STRA2.570e-1542.22Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A425DL39_9STRA2.610e-1546.67BSD domain-containing protein n=12 Tax=Aphanomyces... [more]
A0A2D9Z5W9_9BACT4.160e-1546.67Uncharacterized protein n=3 Tax=Planctomycetia Tax... [more]
A0A5D6XK69_9STRA4.460e-1553.33Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63946contigH-elongata_contig63946:209..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue8.1e-23
Seed eggNOG ortholog2880.D8LSA1
EggNOG free text desc.DegT/DnrJ/EryC1/StrS aminotransferase family
EggNOG OGs2RN8Q@2759,COG0399@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.1961746-CDS-H-elongata_contig63946:208..4781622931025.1961746-CDS-H-elongata_contig63946:208..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63946 209..478 -
1691679666.6651566-CDS-H-elongata_contig63946:208..4781691679666.6651566-CDS-H-elongata_contig63946:208..478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63946 209..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63946.13979.1prot_H-elongata_contig63946.13979.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63946 209..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63946.13979.1

>prot_H-elongata_contig63946.13979.1 ID=prot_H-elongata_contig63946.13979.1|Name=mRNA_H-elongata_contig63946.13979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
LSVRTAFDLYLKALNLPRGSLVVCSPLTIPDMVSILYEHGLVPLPVDLEL
STLAPKADALEAEVKKRRANHGFENTEARVRAIYIAHVFG
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mRNA from alignment at H-elongata_contig63946:209..478-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63946.13979.1 ID=mRNA_H-elongata_contig63946.13979.1|Name=mRNA_H-elongata_contig63946.13979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=270bp|location=Sequence derived from alignment at H-elongata_contig63946:209..478- (Himanthalia elongata Himel1 dioecious)
CTTTCCGTCCGAACCGCGTTCGACCTCTACCTGAAGGCCCTAAACCTTCC
ACGGGGGAGCTTGGTAGTTTGCTCCCCCCTGACGATTCCGGACATGGTTT
CAATTCTATATGAACACGGTCTCGTGCCACTTCCGGTTGACCTCGAACTA
TCGACGTTGGCGCCGAAGGCTGATGCCTTGGAGGCGGAAGTGAAAAAACG
CCGGGCAAATCATGGCTTCGAGAATACTGAAGCGCGTGTAAGAGCGATTT
ACATTGCCCACGTCTTTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig63946:209..478-

>mRNA_H-elongata_contig63946.13979.1 ID=mRNA_H-elongata_contig63946.13979.1|Name=mRNA_H-elongata_contig63946.13979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig63946:209..478- (Himanthalia elongata Himel1 dioecious)
CTTTCCGTCCGAACCGCGTTCGACCTCTACCTGAAGGCCCTAAACCTTCC
ACGGGGGAGCTTGGTAGTTTGCTCCCCCCTGACGATTCCGGACATGGTTT
CAATTCTATATGAACACGGTCTCGTGCCACTTCCGGTTGACCTCGAACTA
TCGACGTTGGCGCCGAAGGCTGATGCCTTGGAGGCGGAAGTGAAAAAACG
CCGGGCAAATCATGGCTTCGAGAATACTGAAGCGCGTGTAAGAGCGATTT
ACATTGCCCACGTCTTTGGTCTTTCCGTCCGAACCGCGTTCGACCTCTAC
CTGAAGGCCCTAAACCTTCCACGGGGGAGCTTGGTAGTTTGCTCCCCCCT
GACGATTCCGGACATGGTTTCAATTCTATATGAACACGGTCTCGTGCCAC
TTCCGGTTGACCTCGAACTATCGACGTTGGCGCCGAAGGCTGATGCCTTG
GAGGCGGAAGTGAAAAAACGCCGGGCAAATCATGGCTTCGAGAATACTGA
AGCGCGTGTAAGAGCGATTTACATTGCCCACGTCTTTGGT
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