mRNA_H-elongata_contig63938.13977.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: D7FYJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ4_ECTSI) HSP 1 Score: 171 bits (432), Expect = 6.960e-53 Identity = 88/112 (78.57%), Postives = 102/112 (91.07%), Query Frame = 1
Query: 13 EDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLEA 348
EDQQKINEFGRLN RLLEIR++K+H+KD+LDKLDDATTELM+GEGDSVMLMLGD F+ CEEE+AT++CER+QE+RQSK D++ EEK IL RQ VLKK LYARFGSSIQLEA
Sbjct: 9 EDQQKINEFGRLNTRLLEIRDDKSHIKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILLRQGVLKKELYARFGSSIQLEA 120
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A6H5KTT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTT7_9PHAE) HSP 1 Score: 124 bits (312), Expect = 4.830e-35 Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1
Query: 4 VRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQE 231
V EDQQKINEFGRLN RLLEIRE+K+HVKD+LDKLDDATTELM+GEGDSVMLMLGD F+ CEEE+AT++CER+QE
Sbjct: 2 VSYEDQQKINEFGRLNTRLLEIREDKSHVKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQE 77
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: B5YND4_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND4_THAPS) HSP 1 Score: 124 bits (312), Expect = 1.950e-34 Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLE 345
+VR EDQ KINEFG+LNARL E+R E A +K +L+K+DDA+TELM G GD VML LG+ E+ ATEFCE + E+ Q+ D++ EE DI+E+QA LKK LY RFG+SI LE
Sbjct: 18 EVRREDQDKINEFGQLNARLYEVRSEIARLKKLLEKIDDASTELMMGNGDKVMLRLGEAMFEATEDEATEFCEAEMEKHQAVLDDLDKEEADIVEKQAALKKVLYGRFGNSINLE 132
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A835Z9N6_9STRA (Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N6_9STRA) HSP 1 Score: 123 bits (309), Expect = 7.040e-34 Identity = 74/132 (56.06%), Postives = 90/132 (68.18%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQ----------------EERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLEA 348
+VR EDQQ+INEFGRLN RL E+R + +K LD LDDATTELM+G+G V L LGD F+V EEE+ATE+CE+KQ E Q+K D ++ EE IL+RQA LKK LYARFG+SI LEA
Sbjct: 11 EVRWEDQQQINEFGRLNTRLNELRGDTKALKGELDNLDDATTELMTGDGGKVNLQLGDAFVVVEEEFATEYCEKKQSIAPAESXXXXXXXXXEGVQAKLDALSREEDSILKRQAELKKILYARFGASINLEA 142
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A7S3YAJ8_HETAK (Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAJ8_HETAK) HSP 1 Score: 122 bits (306), Expect = 1.290e-33 Identity = 67/116 (57.76%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLEA 348
+VR EDQ +INEFG+LN RL EIRE+ +KD D+LDDA TELM+G+GD V + +G+ FI C EEYATE+CE++QE+ Q D EE ILERQ LK LY RFG +I LEA
Sbjct: 12 EVRREDQLQINEFGQLNNRLNEIREDCKALKDKFDRLDDANTELMTGDGDDVKIFMGESFIQCSEEYATEYCEKEQEKLQGMLDTFKEEETAILERQKELKVVLYGRFGDAINLEA 127
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A7S0B128_9STRA (Prefoldin subunit 4 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B128_9STRA) HSP 1 Score: 120 bits (301), Expect = 9.380e-33 Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLE 345
+VR EDQ+ IN+FGRLNARL E+R E+ +K L+++DDA+TELM G GD VMLMLGD F EE ATEFCE + E+ Q+ D + EE +ILE Q LKK LY RFG SI LE
Sbjct: 19 EVRREDQENINKFGRLNARLYEVRGERDAIKKKLERIDDASTELMMGSGDKVMLMLGDAFFESSEEDATEFCEAEVEKFQAVVDNLEEEESEILEEQEKLKKILYTRFGKSINLE 133
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A7S2V806_9STRA (Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V806_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.120e-32 Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 1
Query: 4 VRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLE 345
VR EDQQKINEFGRLN RL E++ E K+ LDKLDDA+TELM+ +G V L+LG+ FI C E+YATE+ +++QE+ Q D+++ EE ILERQ LK+ LYARFGSSI LE
Sbjct: 14 VRWEDQQKINEFGRLNTRLHELQVELKLHKENLDKLDDASTELMTEDGSGVKLLLGEVFIECNEDYATEYLDKEQEKTQVLVDQLSEEEHTILERQKELKEVLYARFGSSINLE 127
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A6U1YJT7_TRICV (Prefoldin subunit 4 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1YJT7_TRICV) HSP 1 Score: 116 bits (291), Expect = 2.450e-31 Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLE 345
+VR DQ+ IN FGRLNARL E+R + +K L+++DDA+TELM G GDSV+L+LGD F C EE ATE CE + + Q DE+ EE ILE Q LK+ LYARFG SI LE
Sbjct: 11 EVRRVDQENINTFGRLNARLYEVRASRDDLKKKLEQIDDASTELMMGSGDSVLLLLGDAFFECTEEEATEHCEAEADRLQGTVDELEEEESAILEEQGTLKRVLYARFGQSINLE 125
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: W7TPN2_9STRA (Prefoldin subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPN2_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.910e-31 Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLE 345
+VR EDQ+ INEFGRLN + LE+ E+ A++K+ L+KLDDA TELM G G V L LG+ F+ E+YATE CERKQE+ Q+K +E+ E+ I RQ LKK LY RFGSSI LE
Sbjct: 29 EVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLE 143
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Match: A0A1E7F096_9STRA (Prefoldin subunit 4 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F096_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.050e-30 Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 1
Query: 1 QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSG-EGDSVMLMLGDGFIVCEEEYATEFCERKQEERQSKSDEIAAEEKDILERQAVLKKALYARFGSSIQLEA 348
+VR EDQ IN+F RLNARL E+R+E+ +K L++LDDA+TELM G EGD+VML++G+ F EE ATE+CE + E + + + EE ILERQA LKK LY RFG SIQLEA
Sbjct: 12 EVRREDQDNINKFARLNARLHELRDERKIIKQSLERLDDASTELMMGSEGDNVMLLIGESFFDTSEEDATEYCESEVERMSGELEILDGEESTILERQAELKKLLYGRFGKSIQLEA 128 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63938.13977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63938.13977.1 >prot_H-elongata_contig63938.13977.1 ID=prot_H-elongata_contig63938.13977.1|Name=mRNA_H-elongata_contig63938.13977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp QVRLEDQQKINEFGRLNARLLEIREEKAHVKDVLDKLDDATTELMSGEGDback to top mRNA from alignment at H-elongata_contig63938:967..2688- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63938.13977.1 ID=mRNA_H-elongata_contig63938.13977.1|Name=mRNA_H-elongata_contig63938.13977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1722bp|location=Sequence derived from alignment at H-elongata_contig63938:967..2688- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63938:967..2688- >mRNA_H-elongata_contig63938.13977.1 ID=mRNA_H-elongata_contig63938.13977.1|Name=mRNA_H-elongata_contig63938.13977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig63938:967..2688- (Himanthalia elongata Himel1 dioecious)back to top |