mRNA_H-elongata_contig6391.13974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6391.13974.1
Unique NamemRNA_H-elongata_contig6391.13974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6391.13974.1 vs. uniprot
Match: A0A6H5KCR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR7_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.240e-33
Identity = 92/274 (33.58%), Postives = 144/274 (52.55%), Query Frame = 3 
Query:   33 ARKALEEELQNETSEAEDSKKLAIGYASVLANLVCAQAIAGSSSDMKSANKLAKSVREKALR-RDPYTLRLVSGAYAEPFLSHLLEHCAPVTGCVRQY---------GGDDDEGDVLGLVAMLVPEAMKTMGDQALHLHLSALCNALTDAVYDVIRKLQDEGGTSPTCCGXXXXXXGGQETEQTASG--------------QRSPQHPVYASIRLLKEVCQWLDLFFEARTGTKEACRAACLGALWALSQAASDHADASIAVKMRESIKIFDAS 782
            AR+  EEE++        +++ A   ++++ N++   A   +S D+K+AN +A+ +R++A+  RD + L L+   +A        E+CAPV+G +R Y         GG     D+L       P A+K M D  L++HLS+LCN+LTDAV DV++KL   G  +            G  T + A G              +   +  V+A+IR++KEVC WL LFF AR GTK AC+A+C G L  L +AA D  D  +  ++ +SIK+  +S
Sbjct:  204 AREDWEEEVRQYREAGNQAQETADSVSAMITNILYYMATGSASCDLKTANAVARGIRKQAVEMRDGHALELLKAPFAVSLFRAYAENCAPVSGFLRCYPSSPFSADVGGVGGTDDLLAXXXXXAPAAIKAMDDNILNVHLSSLCNSLTDAVGDVVQKLDSLGREALKAAN-------GAGTREAAGGGGXDXXXXXXAREERERDERAVHAAIRIVKEVCMWLSLFFAAREGTKAACQASCYGVLSDLKRAAEDQKDQQLRAQLHDSIKLLASS 470
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6391.13974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCR7_9PHAE5.240e-3333.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6391contigH-elongata_contig6391:447..4180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1562
Cds size840
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.907174-UTR-H-elongata_contig6391:446..4661622931023.907174-UTR-H-elongata_contig6391:446..466Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6391 447..466 +
1691679666.4462535-UTR-H-elongata_contig6391:446..4661691679666.4462535-UTR-H-elongata_contig6391:446..466Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6391 447..466 +
1622931024.015334-UTR-H-elongata_contig6391:3478..41801622931024.015334-UTR-H-elongata_contig6391:3478..4180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6391 3479..4180 +
1691679666.5006006-UTR-H-elongata_contig6391:3478..41801691679666.5006006-UTR-H-elongata_contig6391:3478..4180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6391 3479..4180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.9216735-CDS-H-elongata_contig6391:466..6061622931023.9216735-CDS-H-elongata_contig6391:466..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 467..606 +
1691679666.4545145-CDS-H-elongata_contig6391:466..6061691679666.4545145-CDS-H-elongata_contig6391:466..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 467..606 +
1622931023.9411764-CDS-H-elongata_contig6391:1168..13881622931023.9411764-CDS-H-elongata_contig6391:1168..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 1169..1388 +
1691679666.462798-CDS-H-elongata_contig6391:1168..13881691679666.462798-CDS-H-elongata_contig6391:1168..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 1169..1388 +
1622931023.9621458-CDS-H-elongata_contig6391:2047..21371622931023.9621458-CDS-H-elongata_contig6391:2047..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 2048..2137 +
1691679666.4709642-CDS-H-elongata_contig6391:2047..21371691679666.4709642-CDS-H-elongata_contig6391:2047..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 2048..2137 +
1622931023.9782062-CDS-H-elongata_contig6391:2697..28411622931023.9782062-CDS-H-elongata_contig6391:2697..2841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 2698..2841 +
1691679666.4788814-CDS-H-elongata_contig6391:2697..28411691679666.4788814-CDS-H-elongata_contig6391:2697..2841Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 2698..2841 +
1622931023.9984598-CDS-H-elongata_contig6391:3232..34781622931023.9984598-CDS-H-elongata_contig6391:3232..3478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 3233..3478 +
1691679666.4868498-CDS-H-elongata_contig6391:3232..34781691679666.4868498-CDS-H-elongata_contig6391:3232..3478Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6391 3233..3478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6391.13974.1prot_H-elongata_contig6391.13974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6391 467..3478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6391.13974.1

>prot_H-elongata_contig6391.13974.1 ID=prot_H-elongata_contig6391.13974.1|Name=mRNA_H-elongata_contig6391.13974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MPEEARKALEEELQNETSEAEDSKKLAIGYASVLANLVCAQAIAGSSSDM
KSANKLAKSVREKALRRDPYTLRLVSGAYAEPFLSHLLEHCAPVTGCVRQ
YGGDDDEGDVLGLVAMLVPEAMKTMGDQALHLHLSALCNALTDAVYDVIR
KLQDEGGTSPTCCGGGGSGSGGQETEQTASGQRSPQHPVYASIRLLKEVC
QWLDLFFEARTGTKEACRAACLGALWALSQAASDHADASIAVKMRESIKI
FDASPLTPPQPQPPGGGDATGSSAAPDES*
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mRNA from alignment at H-elongata_contig6391:447..4180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6391.13974.1 ID=mRNA_H-elongata_contig6391.13974.1|Name=mRNA_H-elongata_contig6391.13974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3734bp|location=Sequence derived from alignment at H-elongata_contig6391:447..4180+ (Himanthalia elongata Himel1 dioecious)
AGGTAGAGGAAGACGCAGAAATGCCTGAAGAGGCGCGAAAAGCTCTTGAA
GAAGAACTCCAAAACGAAACCTCCGAGGCGGAGGACAGCAAGAAGTTGGC
AATTGGCTACGCCTCCGTCCTGGCGAACCTCGTATGCGCCCAGGCAATCG
CCGGCTCCAGGCAAGGAGAAGAAAATTACAAAATATTTGTCGCCTTGGGA
GTATATTAATTACCCTATGTTTTGTCTGCTGGTATATGTTTTTGTGTTCT
TTGAACCGACTTGCGGCAGCAACTTTGAAAGGGCACACCCGACCCGTTCG
AGTCTCTGCGTCAGTCACGACATAGACTGCTAACAACGTGGTTCCGTTGT
ACGAAGTAGCCATAATGGGGACTTGTTTTACCTTTTGAGCGTCGAAGAAC
CTATGTATTTTGCGCAGGAGCCGAGTCGCCGTTCCGTATCACCGTATCAT
ATTATACTGTACCTAAGTTACAGGGTCGCTCTTTTCTGGTGTAAAATATC
ACGAACGGATTTGTGACGCGGTGTCCTGATTCCGCCGAAATCGAACCCAG
GCGCCCTTTTCTTTTCTTGTGGCACATATTTTGGTGACTAGCGGCTAGCG
ACTATTTTATTTTAACCGTGACGTATTTTATCTCTTTTACCGTATCGCAT
TATCGTATCGTATCTTGTGATTGAAATATATCTTGATTGCAATTAACTTT
ACCCTACCGCATCGAGGGACAGCTCGGACATGAAGAGCGCGAACAAGCTG
GCGAAGAGCGTTCGCGAGAAGGCCTTAAGGCGCGACCCGTACACGTTGCG
TCTCGTGTCGGGGGCGTACGCGGAGCCCTTCCTGTCGCACTTGCTTGAGC
ACTGCGCGCCGGTGACCGGTTGTGTCAGACAATACGGAGGAGACGACGAT
GAAGGAGACGTCTTGGGCCTCGTTGCCATGTTGGTGCCGGAGGTACAGTG
AGGCTGCAACAGCTACACTTTTGATTTGACTTTTAACTGAGTGTGTTTGA
TTTCTATTTTATTTTCTGGTGAGCTTTGTTTTTCAAAGGGTGCCCCCTTA
AACCACCCAAAACCCTTTTTGCCGCCGATTATTAAAAATATGGGATGGAT
GGGATGTACAAGATAATTCCACAGTGATGCAACGGTTGGACGAAGCCGCA
TGTTTTGTGATGCCTATTGGTGTCATGTAGTGTGGAACACCTTAAGGATG
CATGCCATGATCCGACATAGGCGTAGTTTGGCGGTCATTACATGGAGGGG
GAAGGGAGGAGGGTCGAGACTGGGCGTTTGAGGGCAGCCATTGTGCGGAG
TGGAGTGGTTTGCGTAGCGGAGATGATAACGATCCCGTTTCGGTTGAACC
TTGGTTGCTGCATTGTTAATAGTATACAGTACGGTCGTTCTATGAGCTGC
TCCGGTGACTTCATGTTTGAGTTCAGTTAGGATGCGAAGAGCAATCATCT
CTGTCGCTGCTGTCAATTTTGAAGAGACTGGGGGGAAATAATCTTTCATG
GGCTGTATTGCCCCCTCTCTCTCTCTACGTATGTCCCCATCCCCGTTCTC
GATTGATTCCTTGTTGCCCCCTTGCTTTCTCGAACGCTCTCTACAACACA
GGCGATGAAGACAATGGGTGACCAAGCCCTGCATCTCCACCTCTCCGCCT
TGTGTAACGCGCTCACGGACGCTGTGTATGACGTCATCCGGGTGCGTCTG
TCGGCTTGTGATCAAATAGAAAACAAACGACCGGAGTGTTTCCTGTTCTC
AATAGTATACATCACTTGCAAGAGGCAGGGGATGTGCTCAGCTGAAACCA
TTTGTGCAGAAACCTTCCGCAAGAATTAAGTGTAGGTATTGCACAGCGTG
TCGAGCTAGCTCCATGGGCCAACCAATCCCTGGGGGTCACCAGCATGCAC
CAGGCTCAGATAGAGGTAACCAGTACCGCGCATCTCTATACGAGTTCGAG
CCCACTAATGATGGTTCATGAATGGAGAAGGTAACCTCGTCTCCTATCGT
TGGCGCTTTACTAATACTAACATTACTATAATAGGTGGTGTTGATGAGAT
TGACTTGAAGATAGGGGCAACAGAGAAAAAGTGTGTGCAGGAAGGCGTTC
TATCTCCTCTCTAATTTTGTCTCTTGGTGAAGTAGATCAACTCGAAATTA
GTGTGCAGGAGGAAAATTGTGAGTTGACGGCGACTGATTTCACAACCACA
CGTGTCCCCTACCCCCTTTTCCCTATCCCCTTTTCCCCCATGTCGAAACA
GAAGCTCCAAGACGAAGGTGGCACATCACCAACATGCTGTGGGGGAGGGG
GAAGCGGCTCAGGCGGCCAGGAGACTGAGCAAACGGCTTCGGGGCAGCGC
AGCCCTCAACACCCTGTGTATGCCTCCATTCGACTTTTAAAAGAGGTGAG
CGTACACGTTTAGCACTATAATACTCTCCCATGAATAATTGAGCAAGCCT
CGGATTGGTTTTGGTTCAATGATGTCTTCGGATATATGTATATATACATA
TTTTGTGTAGCGGTTACCGTTTGGTCGCTTTGTTCCAAATAAATTAGCTG
TTTGTTTTTTAGAGGGGTTTATTTTCCGGGGAGAGGGGCTACGTGAATGA
CCCACCGGTTGAGCTGTACATGTTTTTTAATCTTTTAATAGTTTGCGGCC
GCGGTATCGGAGGAGGACAGTCTCGCTTCTCTCCCGAGCTCGACACGCGA
GCGAAGATGCGTGAAACAAAAATCCCCCGAGCGACCCCGGTCACGTCTCC
AGTGCGCGTCCGCCCCACCGTCTCAATAAATCACAGGTCTGCCAATGGCT
AGATCTCTTCTTCGAGGCACGGACAGGGACCAAAGAGGCTTGTCGCGCTG
CTTGCTTAGGGGCGCTTTGGGCCCTTTCCCAAGCAGCTAGCGATCACGCT
GACGCCTCCATTGCCGTGAAAATGCGAGAAAGTATCAAAATTTTTGATGC
CTCTCCGTTGACGCCGCCGCAGCCGCAGCCACCCGGGGGTGGAGATGCCA
CGGGTTCCTCGGCTGCTCCCGACGAGTCGTGATACCCCGTCCGTCTTCTC
TCTCTCTCTCTCTCTCTCTCTGTTCGCTTCTAAACATTAATACATGTCTC
TAATTCAGTTTTGTGTTGTTTTTTAATTCGCGTCACGAGCTGCTATTAGC
TGCTGGCCTGCGGACGCGGTCAGTTTAGGGTTGGGTGGGGTCGATCGACT
AGCGACGCTGTGTTTTAAGGTGGAGAGTTCGTGGTGGAGTATGGTTCATT
GCCGGGCAATGCGCGACTGAAGCCGTGGAAGCTAGCTTGGCAATGGACGC
GGCGGCGAGGAGAGCATCGTTTGCGAGTGAGAGAGAGAAACTACTGTTTT
GTTTTATGTTGTATCATAGTTAGGCTCTTGTTGTTCAGCTACGTGCTTTG
TGCTTCGTGCTTCGTGCTGTATGCTGGTAGTGATTGTTGGGAATACCCTC
GTGTAATATTTGTGTGATGTTCGGCAGCGCGCTGAGGTACCCGTTGTCGA
GGCAGGAAGTCTGAATGCAGCACGGGCTTGGTGGTCGGGCTGGTGTGCGA
GAGGACTGATCCGACTCGGCGAGGTGGTAAATCGCAGCGCTGACGAGAGG
TGGTATGAAGGATCAAATGTTGAGCGGTGAACGCGAGTGTTAGAGCTGCA
ATACAGTAATCAAATAGTTTGCCATTTTATTTATGATTCATGTTTGCAAT
TGGATGAACACGCAAACAGCGCGCACACAGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig6391:447..4180+

>mRNA_H-elongata_contig6391.13974.1 ID=mRNA_H-elongata_contig6391.13974.1|Name=mRNA_H-elongata_contig6391.13974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig6391:447..4180+ (Himanthalia elongata Himel1 dioecious)
ATGCCTGAAGAGGCGCGAAAAGCTCTTGAAGAAGAACTCCAAAACGAAAC
CTCCGAGGCGGAGGACAGCAAGAAGTTGGCAATTGGCTACGCCTCCGTCC
TGGCGAACCTCGTATGCGCCCAGGCAATCGCCGGCTCCAGATGCCTGAAG
AGGCGCGAAAAGCTCTTGAAGAAGAACTCCAAAACGAAACCTCCGAGGCG
GAGGACAGCAAGAAGTTGGCAATTGGCTACGCCTCCGTCCTGGCGAACCT
CGTATGCGCCCAGGCAATCGCCGGCTCCAGCTCGGACATGAAGAGCGCGA
ACAAGCTGGCGAAGAGCGTTCGCGAGAAGGCCTTAAGGCGCGACCCGTAC
ACGTTGCGTCTCGTGTCGGGGGCGTACGCGGAGCCCTTCCTGTCGCACTT
GCTTGAGCACTGCGCGCCGGTGACCGGTTGTGTCAGACAATACGGAGGAG
ACGACGATGAAGGAGACGTCTTGGGCCTCGTTGCCATGTTGGTGCCGGAG
CTCGGACATGAAGAGCGCGAACAAGCTGGCGAAGAGCGTTCGCGAGAAGG
CCTTAAGGCGCGACCCGTACACGTTGCGTCTCGTGTCGGGGGCGTACGCG
GAGCCCTTCCTGTCGCACTTGCTTGAGCACTGCGCGCCGGTGACCGGTTG
TGTCAGACAATACGGAGGAGACGACGATGAAGGAGACGTCTTGGGCCTCG
TTGCCATGTTGGTGCCGGAGGCGATGAAGACAATGGGTGACCAAGCCCTG
CATCTCCACCTCTCCGCCTTGTGTAACGCGCTCACGGACGCTGTGTATGA
CGTCATCCGGGCGATGAAGACAATGGGTGACCAAGCCCTGCATCTCCACC
TCTCCGCCTTGTGTAACGCGCTCACGGACGCTGTGTATGACGTCATCCGG
AAGCTCCAAGACGAAGGTGGCACATCACCAACATGCTGTGGGGGAGGGGG
AAGCGGCTCAGGCGGCCAGGAGACTGAGCAAACGGCTTCGGGGCAGCGCA
GCCCTCAACACCCTGTGTATGCCTCCATTCGACTTTTAAAAGAGAAGCTC
CAAGACGAAGGTGGCACATCACCAACATGCTGTGGGGGAGGGGGAAGCGG
CTCAGGCGGCCAGGAGACTGAGCAAACGGCTTCGGGGCAGCGCAGCCCTC
AACACCCTGTGTATGCCTCCATTCGACTTTTAAAAGAGGTCTGCCAATGG
CTAGATCTCTTCTTCGAGGCACGGACAGGGACCAAAGAGGCTTGTCGCGC
TGCTTGCTTAGGGGCGCTTTGGGCCCTTTCCCAAGCAGCTAGCGATCACG
CTGACGCCTCCATTGCCGTGAAAATGCGAGAAAGTATCAAAATTTTTGAT
GCCTCTCCGTTGACGCCGCCGCAGCCGCAGCCACCCGGGGGTGGAGATGC
CACGGGTTCCTCGGCTGCTCCCGACGAGTCGTGAGTCTGCCAATGGCTAG
ATCTCTTCTTCGAGGCACGGACAGGGACCAAAGAGGCTTGTCGCGCTGCT
TGCTTAGGGGCGCTTTGGGCCCTTTCCCAAGCAGCTAGCGATCACGCTGA
CGCCTCCATTGCCGTGAAAATGCGAGAAAGTATCAAAATTTTTGATGCCT
CTCCGTTGACGCCGCCGCAGCCGCAGCCACCCGGGGGTGGAGATGCCACG
GGTTCCTCGGCTGCTCCCGACGAGTCGTGA
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