mRNA_H-elongata_contig639.13972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig639.13972.1
Unique NamemRNA_H-elongata_contig639.13972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig639.13972.1 vs. uniprot
Match: D8LR38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR38_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 4.930e-64
Identity = 150/345 (43.48%), Postives = 209/345 (60.58%), Query Frame = 1 
Query:    1 AKGAEIAASMAGAAMTAAAREKIFRQLPAEERQIIRSMKSNDAYIRRKRDAARNRIREAERMVDKKIEIFDGTSGQWRKFTVDRVSVRWVDLGTRLVLRHVVRAIGDEDEKKDNDDEVGRKVYHKDTRKNHSGQENTERAVNYRARSEIEQLSSDDGCR--------RQAMAEIDLSEVRWTEHTGG-KHMLGNSTTKMKLADFRDSGSGEITSNTERTMEKLKQELEQHMQNLSKEREVEDQAARAAKEAEVSKASHSKTASEVVVAQGQKA-RSDIQSLSRSIFNGWKLGISVPPARKGATSATALSVARRQWVEDQVATAVGQAEMQINIVEQEITSRRRRE 1005
            A GA  +++    A+ AA  EK   +LP +ER++IRSMKS D Y++RKRDA ++RI EAE MV +KIEIFDG +  WR   +  V VRWVDLGT+LVLRHVVR +G E+++ DN+    R     +TR   + Q    R  +           S  G R        R A AE+DL+EVRW E+TG  K    + +   KLA+F+ SGS  +   TE+ +  L+ EL + +Q L K R++ED A   AK+ E SK     TA   ++++ QK  +++IQ+L+RS+ N WKLGI  PP+ K AT+  ALS ARR+WV DQ+ATAVG++E Q   +  E  +RRR+E
Sbjct: 1118 AHGATASSAKGHKALDAAEVEKQIHRLPPDERRLIRSMKSKDGYLKRKRDAQQHRIAEAEAMVGRKIEIFDGAANVWRTVVIASVCVRWVDLGTKLVLRHVVRVLGAEEDEPDNN----RTESENETRGQGNNQVEGRRKSDGGDGDRXXXXGSRGGGRDNSVAPRSRAATAEVDLNEVRWAEYTGRPKERKPSRSNAAKLAEFKVSGSDAVLQKTEKALLALQHELGEEVQALKKRRDIEDTAVSMAKDVETSKVKVHSTAEATILSRSQKKNKAEIQTLARSLRNDWKLGIGAPPSGKRATAGVALSEARRKWVNDQIATAVGRSEQQFKFLAAETAARRRKE 1458
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig639.13972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR38_ECTSI4.930e-6443.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig639contigH-elongata_contig639:16823..19760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.7
Seed ortholog evalue3.1e-59
Seed eggNOG ortholog2880.D8LR38
EggNOG OGs2C4QV@1,2QVNB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1023
Cds size996
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.6708632-CDS-H-elongata_contig639:16822..169611622931023.6708632-CDS-H-elongata_contig639:16822..16961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 16823..16961 -
1691679666.3608077-CDS-H-elongata_contig639:16822..169611691679666.3608077-CDS-H-elongata_contig639:16822..16961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 16823..16961 -
1622931023.6848845-CDS-H-elongata_contig639:17596..177321622931023.6848845-CDS-H-elongata_contig639:17596..17732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 17597..17732 -
1691679666.372965-CDS-H-elongata_contig639:17596..177321691679666.372965-CDS-H-elongata_contig639:17596..17732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 17597..17732 -
1622931023.704325-CDS-H-elongata_contig639:18026..181941622931023.704325-CDS-H-elongata_contig639:18026..18194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 18027..18194 -
1691679666.3811548-CDS-H-elongata_contig639:18026..181941691679666.3811548-CDS-H-elongata_contig639:18026..18194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 18027..18194 -
1622931023.7222672-CDS-H-elongata_contig639:18726..191021622931023.7222672-CDS-H-elongata_contig639:18726..19102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 18727..19102 -
1691679666.3920798-CDS-H-elongata_contig639:18726..191021691679666.3920798-CDS-H-elongata_contig639:18726..19102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 18727..19102 -
1622931023.7340717-CDS-H-elongata_contig639:19296..194011622931023.7340717-CDS-H-elongata_contig639:19296..19401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 19297..19401 -
1691679666.399973-CDS-H-elongata_contig639:19296..194011691679666.399973-CDS-H-elongata_contig639:19296..19401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 19297..19401 -
1622931023.7464874-CDS-H-elongata_contig639:19661..197331622931023.7464874-CDS-H-elongata_contig639:19661..19733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 19662..19733 -
1691679666.4107203-CDS-H-elongata_contig639:19661..197331691679666.4107203-CDS-H-elongata_contig639:19661..19733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig639 19662..19733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.7772014-UTR-H-elongata_contig639:19733..197601622931023.7772014-UTR-H-elongata_contig639:19733..19760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig639 19734..19760 -
1691679666.418501-UTR-H-elongata_contig639:19733..197601691679666.418501-UTR-H-elongata_contig639:19733..19760Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig639 19734..19760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig639.13972.1prot_H-elongata_contig639.13972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig639 16823..19733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig639.13972.1

>prot_H-elongata_contig639.13972.1 ID=prot_H-elongata_contig639.13972.1|Name=mRNA_H-elongata_contig639.13972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MAGAAMTAAAREKIFRQLPAEERQIIRSMKSNDAYIRRKRDAARNRIREA
ERMVDKKIEIFDGTSGQWRKFTVDRVSVRWVDLGTRLVLRHVVRAIGDED
EKKDNDDEVGRKVYHKDTRKNHSGQENTERAVNYRARSEIEQLSSDDGCR
RQAMAEIDLSEVRWTEHTGGKHMLGNSTTKMKLADFRDSGSGEITSNTER
TMEKLKQELEQHMQNLSKEREVEDQAARAAKEAEVSKASHSKTASEVVVA
QGQKARSDIQSLSRSIFNGWKLGISVPPARKGATSATALSVARRQWVEDQ
VATAVGQAEMQINIVEQEITSRRRREASDGL*
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mRNA from alignment at H-elongata_contig639:16823..19760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig639.13972.1 ID=mRNA_H-elongata_contig639.13972.1|Name=mRNA_H-elongata_contig639.13972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2938bp|location=Sequence derived from alignment at H-elongata_contig639:16823..19760- (Himanthalia elongata Himel1 dioecious)
GCTAAAGGTGCTGAAATTGCAGCTTCTATGGCTGGAGCAGCAATGACAGC
CGCCGCAAGAGAGAAAATCTTCCGTCAGCTCCCCGCGGAAGAGAGGCAGG
TCCGAGTCTACAAACTGTGTCGAGACCATCGAACTGCGGTGCGAGCGGTC
AACGCTCTTAGCACCCAGACGCGTTTGGTCCATTTCCTGTTAGCAACAGC
GCATTTCACATCGGGGAAGGTTCAGGTACAAAACCCTGGGGTGAATGCAG
CGTGACAAAGGCAAATGTTTCCTGTTGCGACTGGCTTCGACGCGACATTG
GAACTAAGACAGCCACCCCCCCCCCTTGTTTTCTTAAACTGTACCACCAT
GCTCTAAAGATAATTAGATCTATGAAGAGCAACGATGCATACATCCGCCG
CAAGAGGGACGCCGCACGAAACCGCATAAGGGAGGCTGAGAGGATGGTTG
ACAAAAAGATAGAGGTGTGTTTGGTTTTCGGCTCGTTTTCCGAAAATATG
TGCAAGACTGCATCGTTCTCCGATAACTATCGACTTGCGATTGATTTCCA
CGTGTTAGGTAAGCACTAAATATGGTACAGGCGCACTCTGCTCCTCGTGC
ATATCCTTTGACGTGGCCACATTTGATGACTTCATACGGGCCCTCTCAAC
GCGATCAGATATTTGACGGTACGTCCGGCCAGTGGCGAAAATTTACCGTC
GACAGAGTGTCTGTGCGCTGGGTCGATCTCGGCACGCGACTAGTTCTACG
ACATGTCGTGCGCGCGATCGGGGATGAAGATGAGAAGAAAGATAATGACG
ATGAAGTCGGCCGTAAAGTTTACCACAAGGACACCAGAAAAAATCACAGT
GGGCAGGAAAACACGGAACGGGCTGTAAACTACCGCGCGCGCTCAGAGAT
TGAACAATTGAGCTCAGATGACGGATGCAGGCGGCAGGCGATGGCCGAGA
TCGACCTGAGCGAGGTTCGCTGGACGGAGCATACGGGAGGCAAGCATATG
CTTGGAAACTCTACCACCAAGATGAAACTGGCTGGTGGGTGGTTTGATAA
CGACGCTACGTCGGAAACGCCAATGAGCAAAACCAGCAGATCAAACGCAC
TAAATGTCGTGCATGACAAAATCAATGACCCCGACTCAAAGAGCAACGTT
CGTTTAGTAAAGACGGCTGCGACGTCCTAACGTGAGATGAGACTGTAGTA
ACTTGGGACACCACACTGATAGTAGACGACAACTTGGGCGCGCATAATCC
GCGCAGAACGGATGAAACGGTCCACATGATAATTGTTGTTTTTTTTGTAT
ACAAGTAGGTGAAGAAACGATTGGTGATATCCTATATTTATCCCCCCTTC
ATCTCGAACCAATCTGACTTGGTATTTGTTTGAGTGATGAATCAGCTAGT
ACATCCCCGGCATCGTATGGTTCGTGCCCCATCCCCTCAACCGTTTTTTT
AGTGATGACTTGCGTTCAGCTGGGCTTGAGCGTGTAGGACTCCTACGGTA
CTTCATTCCATAATGGTAAGTTGATACATACGTGCCTCCTTGACGCCAAA
CAAAACTCTTGCAAAGATTTTAGAGATTCTGGTAGCGGCGAAATAACATC
GAACACGGAGCGGACGATGGAGAAGCTGAAGCAAGAACTGGAACAGCATA
TGCAAAATCTGTCGAAGGAGAGGGAGGTGGAAGATCAGGCAGCTCGAGCA
GCGAAAGAAGCAGAGGTTTCCAAGGCGAGCCATTGTTATGCCTCTGCGCG
CAAGATCCCAGCGGCAAAATATCCTGATGGTTCTACGGTGTAGCCGGTGT
TGCTGTTGACAGAAATCGTCAAAGCTAATACCCCTGGTGGTATATCCGTT
TGATATAGCTTCTTCTCTCGCCAACTTGCCCATTGTGGAACGCACGGAGC
ATACAATTTCTGCGGCATCGTTCCTTCAGCGCGCGCTACCTCCCTTGGTA
TCCGCAGCCATATCTCGCAGTCATGAGCGTGACGGATTTTCTCCTCGAAA
TGCGCGACGTAGCAGGCAAAGGCCGAAGCCAAGACCGCGAGCGAAGTTGT
TGTGGCGCAAGGCCAGAAGGCTCGGTCGGACATACAGAGCCTTTCGAGGT
CGATTTTCAACGGTTGGAAGCTAGGCATAAGTGTACCACCTGCTAGAAAA
GGGGCGACCAGCGCGTAAGTTCCATGATTTTCTTGTGATAATTATAACAA
AGTCACGTTCGTGTTTTCGAGCTCTTTGTCGTAGCCACCTCGACGCTGTG
TCTCTTTTTTTCTTTTCTTTCTTTTTCTCTCTCTCTCTCTCTCTCTCTCC
ATGTTTTTGTTTTTGTTTTTGTATAAAATATAAAGCGTAAACATACGTGT
TTTTTGTTTGCTTCTCCACGTTTTATCTGCGGCTGACGTCATCACGAGCG
GAACTGGACTAAAACCAGACGCTAAATGTGCGAATTCATTTCGATTAAAC
TCGATCCAAATGAAATAAAAAATAGCTCGTCGTTGATGACTGTATAGGTC
TACTTACGTACGTAGAGCAGATCTGTGCAAGACTCCATATTTTATCCCAG
GGAGCGCAACTGAAAATCCCCCCGTAGTCTGTGGAGCCCGACAAGCTAGA
CGACCACAATGCGTCTTGTGGAACACATAGCGTCCACGTTGTAGTTAACA
ACAATACTCACCTGGCAGCTTGATTCTCGTGAAGTTGGTTTCTCTCGAAC
GAGATGCTAAGGCGTCTCTCCGCTTTTCCTGAGGCCGACCTGCTGCATAT
GTTCCGCCCGCACGATACGGTATGCCTGAACCATACATCGCCACCATAGC
ACTGCGTTGTCTGTGGCGAGGCGACAATGGGTGGAAGACCAGGTCGCCAC
TGCCGTCGGTCAGGCGGAGATGCAGATTAACATTGTCGAGCAAGAAATAA
CATCAAGACGGCGTCGAGAGGCAAGCGATGGGCTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig639:16823..19760-

>mRNA_H-elongata_contig639.13972.1 ID=mRNA_H-elongata_contig639.13972.1|Name=mRNA_H-elongata_contig639.13972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig639:16823..19760- (Himanthalia elongata Himel1 dioecious)
ATGGCTGGAGCAGCAATGACAGCCGCCGCAAGAGAGAAAATCTTCCGTCA
GCTCCCCGCGGAAGAGAGGCAGATGGCTGGAGCAGCAATGACAGCCGCCG
CAAGAGAGAAAATCTTCCGTCAGCTCCCCGCGGAAGAGAGGCAGATAATT
AGATCTATGAAGAGCAACGATGCATACATCCGCCGCAAGAGGGACGCCGC
ACGAAACCGCATAAGGGAGGCTGAGAGGATGGTTGACAAAAAGATAGAGA
TAATTAGATCTATGAAGAGCAACGATGCATACATCCGCCGCAAGAGGGAC
GCCGCACGAAACCGCATAAGGGAGGCTGAGAGGATGGTTGACAAAAAGAT
AGAGATATTTGACGGTACGTCCGGCCAGTGGCGAAAATTTACCGTCGACA
GAGTGTCTGTGCGCTGGGTCGATCTCGGCACGCGACTAGTTCTACGACAT
GTCGTGCGCGCGATCGGGGATGAAGATGAGAAGAAAGATAATGACGATGA
AGTCGGCCGTAAAGTTTACCACAAGGACACCAGAAAAAATCACAGTGGGC
AGGAAAACACGGAACGGGCTGTAAACTACCGCGCGCGCTCAGAGATTGAA
CAATTGAGCTCAGATGACGGATGCAGGCGGCAGGCGATGGCCGAGATCGA
CCTGAGCGAGGTTCGCTGGACGGAGCATACGGGAGGCAAGCATATGCTTG
GAAACTCTACCACCAAGATGAAACTGGCTGATATTTGACGGTACGTCCGG
CCAGTGGCGAAAATTTACCGTCGACAGAGTGTCTGTGCGCTGGGTCGATC
TCGGCACGCGACTAGTTCTACGACATGTCGTGCGCGCGATCGGGGATGAA
GATGAGAAGAAAGATAATGACGATGAAGTCGGCCGTAAAGTTTACCACAA
GGACACCAGAAAAAATCACAGTGGGCAGGAAAACACGGAACGGGCTGTAA
ACTACCGCGCGCGCTCAGAGATTGAACAATTGAGCTCAGATGACGGATGC
AGGCGGCAGGCGATGGCCGAGATCGACCTGAGCGAGGTTCGCTGGACGGA
GCATACGGGAGGCAAGCATATGCTTGGAAACTCTACCACCAAGATGAAAC
TGGCTGATTTTAGAGATTCTGGTAGCGGCGAAATAACATCGAACACGGAG
CGGACGATGGAGAAGCTGAAGCAAGAACTGGAACAGCATATGCAAAATCT
GTCGAAGGAGAGGGAGGTGGAAGATCAGGCAGCTCGAGCAGCGAAAGAAG
CAGAGGTTTCCAAGGCGAGCCATTATTTTAGAGATTCTGGTAGCGGCGAA
ATAACATCGAACACGGAGCGGACGATGGAGAAGCTGAAGCAAGAACTGGA
ACAGCATATGCAAAATCTGTCGAAGGAGAGGGAGGTGGAAGATCAGGCAG
CTCGAGCAGCGAAAGAAGCAGAGGTTTCCAAGGCGAGCCATTCCAAGACC
GCGAGCGAAGTTGTTGTGGCGCAAGGCCAGAAGGCTCGGTCGGACATACA
GAGCCTTTCGAGGTCGATTTTCAACGGTTGGAAGCTAGGCATAAGTGTAC
CACCTGCTAGAAAAGGGGCGACCAGCGCCCAAGACCGCGAGCGAAGTTGT
TGTGGCGCAAGGCCAGAAGGCTCGGTCGGACATACAGAGCCTTTCGAGGT
CGATTTTCAACGGTTGGAAGCTAGGCATAAGTGTACCACCTGCTAGAAAA
GGGGCGACCAGCGCCACTGCGTTGTCTGTGGCGAGGCGACAATGGGTGGA
AGACCAGGTCGCCACTGCCGTCGGTCAGGCGGAGATGCAGATTAACATTG
TCGAGCAAGAAATAACATCAAGACGGCGTCGAGAGGCAAGCGATGGGCTC
TAACACTGCGTTGTCTGTGGCGAGGCGACAATGGGTGGAAGACCAGGTCG
CCACTGCCGTCGGTCAGGCGGAGATGCAGATTAACATTGTCGAGCAAGAA
ATAACATCAAGACGGCGTCGAGAGGCAAGCGATGGGCTCTAA
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