mRNA_H-elongata_contig63865.13965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63865.13965.1
Unique NamemRNA_H-elongata_contig63865.13965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63865.13965.1 vs. uniprot
Match: D7FMI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI5_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.540e-28
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:  205 GRAIFIIFIAFLNFALSDAGWLGTATAVLLLLLGGSMMIVYLKYPDLLDEAPGLGDLKT-APPRREGYAPPPEMPSTSL 438
            GRA+FIIFIAFLNFAL+DAGW  T T +LLLL GG+M++V+ KYP LLDEAPGLGDLKT APPR++ YAPPP MPSTSL
Sbjct:  125 GRALFIIFIAFLNFALTDAGWFATFTGLLLLLHGGAMIVVFTKYPHLLDEAPGLGDLKTTAPPRQDEYAPPPTMPSTSL 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63865.13965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMI5_ECTSI1.540e-2875.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63865contigH-elongata_contig63865:1097..3462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-23_000440.1
Exons3
Model size789
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63865.13965.1prot_H-elongata_contig63865.13965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63865 1445..3303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.781057-UTR-H-elongata_contig63865:1096..14441622931022.781057-UTR-H-elongata_contig63865:1096..1444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63865 1097..1444 -
1691679666.0396771-UTR-H-elongata_contig63865:1096..14441691679666.0396771-UTR-H-elongata_contig63865:1096..1444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63865 1097..1444 -
1622931022.8753462-UTR-H-elongata_contig63865:3303..34621622931022.8753462-UTR-H-elongata_contig63865:3303..3462Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63865 3304..3462 -
1691679666.0758712-UTR-H-elongata_contig63865:3303..34621691679666.0758712-UTR-H-elongata_contig63865:3303..3462Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63865 3304..3462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.7999024-CDS-H-elongata_contig63865:1444..14801622931022.7999024-CDS-H-elongata_contig63865:1444..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63865 1445..1480 -
1691679666.049812-CDS-H-elongata_contig63865:1444..14801691679666.049812-CDS-H-elongata_contig63865:1444..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63865 1445..1480 -
1622931022.814999-CDS-H-elongata_contig63865:1658..17671622931022.814999-CDS-H-elongata_contig63865:1658..1767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63865 1659..1767 -
1691679666.0602741-CDS-H-elongata_contig63865:1658..17671691679666.0602741-CDS-H-elongata_contig63865:1658..1767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63865 1659..1767 -
1622931022.8556104-CDS-H-elongata_contig63865:3166..33031622931022.8556104-CDS-H-elongata_contig63865:3166..3303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63865 3167..3303 -
1691679666.0681286-CDS-H-elongata_contig63865:3166..33031691679666.0681286-CDS-H-elongata_contig63865:3166..3303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63865 3167..3303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63865.13965.1

>prot_H-elongata_contig63865.13965.1 ID=prot_H-elongata_contig63865.13965.1|Name=mRNA_H-elongata_contig63865.13965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLCAVDVDVVVVTVDGRAIFIIFIAFLNFALSDAGWLGTATAVLLLLLGG
SMMIVYLKYPDLLDEAPGLGDLKTAPPRREGYAPPPEMPSTSL*
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mRNA from alignment at H-elongata_contig63865:1097..3462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63865.13965.1 ID=mRNA_H-elongata_contig63865.13965.1|Name=mRNA_H-elongata_contig63865.13965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2366bp|location=Sequence derived from alignment at H-elongata_contig63865:1097..3462- (Himanthalia elongata Himel1 dioecious)
CTCCTCGAAGGTGAGTCCAACCTTACTCTGCTAGAAAGACCCTCACCACT
CGCTTTGGGTCATGACAGAGCAGACCTTGCCGAGGCAGCGAGGGGAACGG
CGGTTGTAGGTTGACGGTGATACCGTTGCTGTGTGCTTGGGTTCTGACCG
AAGGCATGCATGCTGTGTGCTGTTGATGTTGATGTTGTTGTTGTTACTGT
TGATGGCAGGGCTATTTTCATAATCTTCATCGCGTTCCTCAATTTCGCTC
TTAGCGACGCTGGCTGGTTGGGAACGGCAACGGCGGTACTGTTACTGTGA
GTACTGGAATTTATAGACTAGAGCATTTTATATTATTATTATTATTATTA
TTGTTATACTACAGTATAATATGCGATACCCTTTATTCCATCTCTATTCC
CTTTACAGTTAGTTGTTGTTCTTGTTTTCGTCTCCATTTATTCTGGAGGT
CAGATTATTTGTGGACGCACCAGCCGGGGTCATACAGGAGGAAGGTCACA
CAGTATTTCTACACCTTCCTTCTGCGGTGCTTGCCTTAATCTTGTATATA
GTATAGTGTATATAGTATACAGTATATAGTATGTCGAATATTGTGTACAG
TACCCACGAAATAATCGTTCTCCACTTGTTGGGCATGGTGTGAGGTATCA
CACAGCTCATAGTGTGTTACTTATCCCCTTTCTCTCTCTCCCGCACCCCC
TCTTATTATTAGTATTAGTAGTAGCATTAGTAGTCCACACTCTCTAGGCT
ATACTTTGGTTTGTCGTCATAGTCCCCATATGAAGAATAGCGTAAGGTGT
GCGGGATAATCATGGGACCCCTGACATTATTCCGTTGACCCGATGAACTT
ACTACTGTATTGGGGAACACGAATAATCACGTGACGGTTTTGTGCTCAAG
GTAGGAATGCACACATTCGAACCTGACGATAGTTGGTCCCCTGGACTGCA
CCTCTCACGGGAAGATTTGGATGTTTGGAGGGTTGGAATGAGTTCAAGGT
TTTCAAAATCAAAATCCCAGTTCGTGTAACTACGTCGAGATTCGACCTTA
CATCCCAAAGTCAGAAGGTTTTGAAGTTACCAACTGAGCCACCGGGGCAA
TCCGATACATATTATCGATATTAGGCCATTAGGCGACTAGCTCTAGCTTT
AGAGTAAGTACAGATAATCGATTGGACATATATTATAGTCTTTAGTTAAA
GTGTATGGCTGGGTCTTGAGCTCCTATTTTCTTCAACATGCACGTTTGGA
TATTTCGGCCGCATTTCGATGTCTTATGGTGTGTTCTGGTGTGTTATCGA
TAGACGCCACAACAATTTGTTATTCATATTAATATTAATATTAATAGTAG
ACTGACTTTATTATTAGCTGTGTTATCGATTTTGAATTGAATTATTAAGA
TATCCCACAACCATTTATTAATATTCGTAGAAGAGAAAGAGAAGCGTCCT
TTGTATTGTATTAATGAATTAAAAGCAGATTGCGCCGAAGATTGAAGATA
ATTTTCTCCCGTCGAGGTGTTCGGGATAATATGGAGTAATACGGCATGAA
ATTATGCTAGATATAACAGCGCATCCAGGTTGATTTGACCCCTCCTCTTC
TATCTTTTTATCTCTGGCCTGATGGTGATGATGCCACTGTTGCCCCTGTT
CCCCCTGCACCGCATTGTGGTCGTGTGATCTACGGTCGAACGAAGGCTAC
TGGGAGGGTCGATGATGATCGTCTACCTCAAATACCCCGATCTCCTGGAT
GAAGCGCCAGGACTGGGCGATCTCAAGACCGCTCCGCCAAGACGAGAAGG
CTACGTGAGTCTGTCTTAGCCCCCAATTATCCAGACCTCTGTCATAGCCC
CGCATCCAGGTCGCTCCCCCCCCCCGAGCGGTAGCGGTAGTGATAGCAGA
CTTGCCGCACATAACGGGACCAAATTGCCACCTCCCGCTGTGTTCTCTTG
TTTCTGTAACTGTTATTTTGCGTCACGTACAGGCCCCTCCTCCGGAAATG
CCATCAACATCCCTATAGCTCTCTATAGTTCTAAATCGGGTCGTTGCCTC
GAAAAGAGTGAAAAGCGATGGCGTGTGTGGGCATGTTGGAGCTTAGGTCA
TGCCTGCCGCGTTGTATACCATACTGAAGCTGTATTATGTATAGCTCTCG
TGAAAGGGGAAAGGCGAAAGGGAAAGTGTCTCCAACGGCCATAGGCGAAG
CTCAAGGAAGCGTCTGGAAGGAGGTCGAGGCCGAGGTTAGGGTTCTCGTG
TGTAGCATGGGACGGGGCCTAACCCTAAATCTAGCCTAATACACTAAGCG
ATGCGATAATAATGTTAATAATCCTATAATCCTATATTACTAATACTATG
TTACTATTACTGTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig63865:1097..3462-

>mRNA_H-elongata_contig63865.13965.1 ID=mRNA_H-elongata_contig63865.13965.1|Name=mRNA_H-elongata_contig63865.13965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig63865:1097..3462- (Himanthalia elongata Himel1 dioecious)
ATGCTGTGTGCTGTTGATGTTGATGTTGTTGTTGTTACTGTTGATGGCAG
GGCTATTTTCATAATCTTCATCGCGTTCCTCAATTTCGCTCTTAGCGACG
CTGGCTGGTTGGGAACGGCAACGGCGGTACTGTTACTATGCTGTGTGCTG
TTGATGTTGATGTTGTTGTTGTTACTGTTGATGGCAGGGCTATTTTCATA
ATCTTCATCGCGTTCCTCAATTTCGCTCTTAGCGACGCTGGCTGGTTGGG
AACGGCAACGGCGGTACTGTTACTGCTACTGGGAGGGTCGATGATGATCG
TCTACCTCAAATACCCCGATCTCCTGGATGAAGCGCCAGGACTGGGCGAT
CTCAAGACCGCTCCGCCAAGACGAGAAGGCTACGCTACTGGGAGGGTCGA
TGATGATCGTCTACCTCAAATACCCCGATCTCCTGGATGAAGCGCCAGGA
CTGGGCGATCTCAAGACCGCTCCGCCAAGACGAGAAGGCTACGCCCCTCC
TCCGGAAATGCCATCAACATCCCTATAGGCCCCTCCTCCGGAAATGCCAT
CAACATCCCTATAG
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