mRNA_H-elongata_contig6386.13963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6386.13963.1
Unique NamemRNA_H-elongata_contig6386.13963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: D8LRS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS5_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 2.710e-143
Identity = 206/252 (81.75%), Postives = 230/252 (91.27%), Query Frame = 1
Query:    1 RLLHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGILPDSY 756
            RLLHDARA   H+EAHSEKGDYLK MVFGGLDGILTSF+IVAG+AGG LP AVVLVLGFSNIFA+ALSMGVGEYLSSKAHNEYVMAEK+REEWELKNHREGEILEMV+IF ERGM+++DAEDVI KMAKYDDFFVNLMMNEELGLQVPTGD++DT+KEGFVMF+SFA FGAMPLLGYVIVP IKP+SS  +LF VAC+VTAA+LF MGAIKSQFGTR W TSG EML LGG+CAALA+EIG  V+G++  ++
Sbjct:   39 RLLHDARAGQAHDEAHSEKGDYLKAMVFGGLDGILTSFAIVAGAAGGHLPVAVVLVLGFSNIFADALSMGVGEYLSSKAHNEYVMAEKRREEWELKNHREGEILEMVEIFEERGMSRQDAEDVIGKMAKYDDFFVNLMMNEELGLQVPTGDDDDTVKEGFVMFLSFAFFGAMPLLGYVIVPLIKPDSSPAILFFVACLVTAASLFGMGAIKSQFGTRHWCTSGTEMLFLGGSCAALAFEIGKAVDGLIGQNH 290          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: A0A835YUT7_9STRA (VIT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT7_9STRA)

HSP 1 Score: 364 bits (934), Expect = 1.370e-124
Identity = 183/250 (73.20%), Postives = 212/250 (84.80%), Query Frame = 1
Query:    1 RLLHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGILPD 750
            RLLHDARA  PHEEAHSE G+YLK MVFGGLDGILTSF++VAG+AGG L   VVLVLGFSNI A+ALSMGVGEYLSS+AHNEYVMAEK+REEWELKNHREGEI EMV IF +RGM+QEDA DV+NKMAKYDDFFVNLMM+EEL LQVP   +++TIKEGF+MF+SFA FGA+PLLGY I P + P+ S  +LF +AC VT  +LF MGAIKS+F TR WY SG EM+ LGG CAA+A+EIG +V+G+L D
Sbjct:   31 RLLHDARAGEPHEEAHSEAGEYLKVMVFGGLDGILTSFAVVAGAAGGGLDWPVVLVLGFSNILADALSMGVGEYLSSQAHNEYVMAEKRREEWELKNHREGEIAEMVAIFTQRGMSQEDASDVVNKMAKYDDFFVNLMMSEELQLQVPES-QDETIKEGFIMFLSFATFGALPLLGYTIFPMLDPDISNAILFKLACAVTGVSLFLMGAIKSKFATRSWYASGFEMVCLGGVCAAVAFEIGNLVDGLLVD 279          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: A0A7S3XV86_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV86_HETAK)

HSP 1 Score: 320 bits (820), Expect = 2.310e-107
Identity = 161/249 (64.66%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    1 RLLHDAR-ANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGIL 744
            R++HD+  A   H E H   G+Y+K M+FGGLDGILTSF+IVAG+ GG L    VL+LGFSNI A+ALSMGVGEYLSSKAHNEYV++EKKREEWEL+NH+EGEI EM+ I+VERGM Q DA  V+N MAKY+ FFVN+MM EELGLQVP  DE++T+KEG VMF+SFA FGA+PLLGYVI P++    +E  LF  A   T   LF MGA+KS FGT+ WY SGAE L LGGACA +AYE+G +VNG++
Sbjct:   24 RIIHDSTSAAGQHRENHKGGGEYVKAMIFGGLDGILTSFAIVAGAVGGGLAWQSVLILGFSNILADALSMGVGEYLSSKAHNEYVLSEKKREEWELRNHKEGEIKEMIDIYVERGMGQADATQVVNTMAKYEAFFVNVMMAEELGLQVPDEDEDETLKEGLVMFLSFACFGALPLLGYVIFPSVLGVDNESTLFWTAVATTLTVLFVMGAVKSYFGTKSWYASGAETLALGGACALVAYEVGGLVNGLV 272          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: W7TLX2_9STRA (Vacuolar iron family transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLX2_9STRA)

HSP 1 Score: 315 bits (806), Expect = 7.690e-105
Identity = 160/249 (64.26%), Postives = 195/249 (78.31%), Query Frame = 1
Query:    1 RLLHDARAN-HPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGIL 744
            RL+H  +     H+E H   GDY+K+M+FGGLDGILTSF+IVAG+AGG LP  VV+VLGFSNIFA+A SMG+GEYLSSKAHNE+V  EK+RE WEL+N REGEI EM+ I+VERGM  +DAEDV+ KM+KYDDFFVN+MM EELGLQVP  ++ D +KEG VMF+SFA FGAMPLLGY ++P   P      LF +AC VTA TLF MGA+KS+F TR W  SG EML+LGG CA +AYEIG +V+ ++
Sbjct:   45 RLIHQQKFEAKTHDETHDSVGDYVKSMIFGGLDGILTSFAIVAGAAGGGLPVEVVMVLGFSNIFADAFSMGMGEYLSSKAHNEFVFKEKERESWELQNFREGEIKEMIDIYVERGMEPDDAEDVVRKMSKYDDFFVNVMMVEELGLQVPDPND-DIVKEGVVMFLSFAGFGAMPLLGYALIPLCFPSLGPSHLFNIACGVTALTLFIMGAVKSKFSTRGWLHSGLEMLVLGGICAVMAYEIGHLVSSLV 292          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: A0A6V1NR54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NR54_HETAK)

HSP 1 Score: 297 bits (760), Expect = 5.460e-98
Identity = 148/250 (59.20%), Postives = 192/250 (76.80%), Query Frame = 1
Query:    1 RLLHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQV--PTGDENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGIL 744
            R  HD      H++ ++  G+ LK +VFGGLDG+LTSF+I+AG+AGG +   VVLVLGFSNI A+ALSMGVGEYLSS+AH EYV++E++REEWEL+NHREGE+ EMV+I+V RGM ++DAE V+N++AKYD+FFVN+MM EELG+       D  DT++EG +MF +FA+FG+MPLLGY +VPA+ P++S   LFAVA  VT   LF +GA+KS F T+ WY SG E LLLGG CA +AYEIG  V  +L
Sbjct:   42 RNAHDNMEEGAHDDHYTPMGEKLKAVVFGGLDGVLTSFAIIAGAAGGGMGVDVVLVLGFSNIVADALSMGVGEYLSSRAHAEYVLSERRREEWELRNHREGEVREMVEIYVNRGMARDDAEVVLNRIAKYDEFFVNVMMAEELGMPANGQVADPADTVQEGLIMFAAFAVFGSMPLLGYCVVPALAPDASSSELFAVAVFVTLLFLFGLGAVKSHFSTKSWYCSGIETLLLGGCCAGIAYEIGNCVQSML 291          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: A0A7S4MYN1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYN1_9STRA)

HSP 1 Score: 295 bits (755), Expect = 3.130e-97
Identity = 150/249 (60.24%), Postives = 184/249 (73.90%), Query Frame = 1
Query:    7 LHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGD-ENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGILPD 750
             HD R      E H  +G  LK M+FGGLDGILTSF+IVAG+AGG L  +V+L+LGFSNIFA+ALSMGVGE+LSSKA NE++++E++RE WE++N+ EGEI EMV I+V RGM ++DAE VI  M+KY DFFV++MM EEL LQVP  D + +  KEG VMF SFA FGA PLLGY I+PA  P   ED LF  ACIVT   LF MG +KS FG+  W+  G E LLLGGACAA+AY IG  V+G++ D
Sbjct:   42 FHDTRVIEESTENHKTEGGLLKPMIFGGLDGILTSFAIVAGAAGGSLSTSVILILGFSNIFADALSMGVGEFLSSKAENEWILSERERENWEMENYPEGEIREMVDIYVSRGMERDDAEMVIKTMSKYQDFFVDVMMAEELQLQVPEDDYQMENFKEGVVMFCSFATFGAFPLLGYAIIPAAFPYLGEDALFTCACIVTGIVLFCMGCVKSNFGSHHWFWCGMETLLLGGACAAIAYTIGQFVDGLVGD 290          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: A0A7S1VE63_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VE63_9STRA)

HSP 1 Score: 290 bits (743), Expect = 1.440e-95
Identity = 145/236 (61.44%), Postives = 184/236 (77.97%), Query Frame = 1
Query:   37 EEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDE-NDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGI 741
            EE H E G  LK M+FGGLDGILTSF+IVAG+AGG L   VVL+LGFSNIFA+ALSMGVGE+LSSKA NE++++E++RE WE++N+ EGEI EMV I+V RGM Q+DAE VI  MAKY+DFFV++MM +EL LQVP  D   ++++EG +MF SFA FGA+PL+GYVI P + P   +D LF  ACIVTA  LF +G++KS F +  W+ SG+E LLLGGACA LAY IG  ++G+
Sbjct:   40 EEPHQEGGGLLKPMIFGGLDGILTSFAIVAGAAGGHLSTGVVLILGFSNIFADALSMGVGEFLSSKAENEWILSERRREAWEMENYPEGEIKEMVDIYVSRGMEQQDAELVIKTMAKYEDFFVDVMMTQELELQVPDDDHVKESMREGVIMFCSFAFFGALPLIGYVIFPILFPTMDDDALFWSACIVTAVVLFMLGSVKSMFCSMNWFVSGSETLLLGGACATLAYTIGQFLDGL 275          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: B8BVF1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVF1_THAPS)

HSP 1 Score: 286 bits (732), Expect = 6.290e-94
Identity = 142/249 (57.03%), Postives = 186/249 (74.70%), Query Frame = 1
Query:    7 LHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDEN-DTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGILPD 750
             HD R N    E H  +G  LK ++FGGLDGILT+F+IVAG+AGG +P  V+LVLGFSNIFA+AL+MGVGE+LSSKA NE++++E++RE WE++N+ EGEI EM+ I+ ERGM  +DA+ VI  MAKY +FFV++MM EEL LQVP  D   +++KEG VMF +FA FG++PLLGY+++PA+ P   EDVLF  ACIVT   LF MG +KS F    W+T G E LLLGGACA +AY IG  V+ ++ +
Sbjct:   30 FHDKRHNTSGVEMHQTEGGMLKPLIFGGLDGILTAFAIVAGAAGGSMPIPVILVLGFSNIFADALAMGVGEFLSSKAENEWILSERRRENWEMENYPEGEIAEMIDIYQERGMTHDDAKLVIETMAKYKEFFVDVMMAEELALQVPDEDHKIESMKEGVVMFGAFATFGSLPLLGYIVIPALFPSLGEDVLFTAACIVTGMVLFGMGCVKSIFSAANWFTCGLETLLLGGACATVAYTIGQFVDKLIAE 278          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: A0A1Z5JYE5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYE5_FISSO)

HSP 1 Score: 286 bits (731), Expect = 9.530e-94
Identity = 147/249 (59.04%), Postives = 193/249 (77.51%), Query Frame = 1
Query:    1 RLLHDARANH-PHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDEN---DTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVN 735
            R  H++R++    EEAH + G  LK ++FGGLDGILTSF+IVAG+AGG+L P+VVL+LGFSNIFA+ALSMGVGE+LSSKA NE++++E++REEWE +N+ EGEI EM++I+  RGM+ EDA+ VIN MAKY DFFV++MM +EL LQ P  +EN   +  +EG VMF SFA FGAMPLLGYVI+PA  P+ S D LFA AC++T   LF MG++KS F T+ W+ +G E L LGGACA +A+ IG ++ 
Sbjct:   26 RQYHESRSSAVKSEEAHQQGGGMLKPIIFGGLDGILTSFAIVAGAAGGRLDPSVVLILGFSNIFADALSMGVGEFLSSKAENEWILSERRREEWEFENYPEGEIEEMIEIYESRGMSHEDAKLVINTMAKYKDFFVDVMMTQELELQPP--EENYLQENFREGVVMFSSFAAFGAMPLLGYVIIPAAFPDLSTDYLFACACLITGMVLFLMGSVKSFFSTQHWFRAGMETLSLGGACATVAFTIGQVLQ 272          
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Match: B7FUB4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUB4_PHATC)

HSP 1 Score: 285 bits (728), Expect = 2.720e-93
Identity = 147/251 (58.57%), Postives = 189/251 (75.30%), Query Frame = 1
Query:    1 RLLHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLPPAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHREGEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTGDE-NDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVTAATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGILPD 750
            R  HDA++    E+ H  +G  LK ++FGGLDGILTSF+IVAG+AGG+L P VVL+LG SNIFA+ALSMGVGE+LSSKA+NE++++E+ REEWEL+N+ EGEI EMV+IF ++GM+ EDA   IN MAKY DFFV++MM +EL LQVP  D   +++KEG VMF SFA FGA+PLLGYV+ P    + SE  LF  ACIVT   LF MG++KS F  +QW+ +G E LLLGGACA +A+ IG +V  +  D
Sbjct:   27 RQYHDAKS--ASEDGHQTEGGMLKPIIFGGLDGILTSFAIVAGAAGGELSPQVVLILGVSNIFADALSMGVGEFLSSKANNEWILSERAREEWELENYPEGEIKEMVEIFEDKGMSHEDAVSCINTMAKYKDFFVDIMMQQELELQVPDKDHIRESMKEGVVMFCSFAFFGALPLLGYVLFPLEFHDMSEGELFVSACIVTGMVLFFMGSVKSFFSNQQWFIAGMETLLLGGACATVAFTIGQLVKSVYGD 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6386.13963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRS5_ECTSI2.710e-14381.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUT7_9STRA1.370e-12473.20VIT family-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S3XV86_HETAK2.310e-10764.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TLX2_9STRA7.690e-10564.26Vacuolar iron family transporter n=2 Tax=Monodopsi... [more]
A0A6V1NR54_HETAK5.460e-9859.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4MYN1_9STRA3.130e-9760.24Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1VE63_9STRA1.440e-9561.44Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B8BVF1_THAPS6.290e-9457.03Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5JYE5_FISSO9.530e-9459.04Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7FUB4_PHATC2.720e-9358.57Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6386contigH-elongata_contig6386:3378..7662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.9
Seed ortholog evalue1.1e-112
Seed eggNOG ortholog2880.D8LRS5
Preferred nameCCC1
KEGG koko:K10610
KEGG Pathwayko03420,ko04120,ko05161,ko05203,map03420,map04120,map05161,map05203
KEGG ModuleM00385,M00386
GOsGO:0000041,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005381,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006828,GO:0006873,GO:0006874,GO:0006875,GO:0006879,GO:0006880,GO:0008150,GO:0008324,GO:0009987,GO:0010035,GO:0010038,GO:0010039,GO:0012505,GO:0015075,GO:0015093,GO:0015318,GO:0015684,GO:0016020,GO:0016021,GO:0019725,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0034220,GO:0034755,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051238,GO:0051641,GO:0051651,GO:0051716,GO:0055065,GO:0055071,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071421,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0097577,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098852,GO:1903874
EggNOG free text desc.cellular manganese ion homeostasis
EggNOG OGsCOG1814@1,KOG4473@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCcc1 family
Ec32 orthologEc-08_002260.1
Exons7
Model size765
Cds size765
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.362237-CDS-H-elongata_contig6386:3377..35091622931022.362237-CDS-H-elongata_contig6386:3377..3509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 3378..3509 -
1691679665.867626-CDS-H-elongata_contig6386:3377..35091691679665.867626-CDS-H-elongata_contig6386:3377..3509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 3378..3509 -
1622931022.384719-CDS-H-elongata_contig6386:3748..38541622931022.384719-CDS-H-elongata_contig6386:3748..3854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 3749..3854 -
1691679665.8814583-CDS-H-elongata_contig6386:3748..38541691679665.8814583-CDS-H-elongata_contig6386:3748..3854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 3749..3854 -
1622931022.403348-CDS-H-elongata_contig6386:4075..41641622931022.403348-CDS-H-elongata_contig6386:4075..4164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 4076..4164 -
1691679665.8961577-CDS-H-elongata_contig6386:4075..41641691679665.8961577-CDS-H-elongata_contig6386:4075..4164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 4076..4164 -
1622931022.422719-CDS-H-elongata_contig6386:5679..57841622931022.422719-CDS-H-elongata_contig6386:5679..5784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 5680..5784 -
1691679665.904746-CDS-H-elongata_contig6386:5679..57841691679665.904746-CDS-H-elongata_contig6386:5679..5784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 5680..5784 -
1622931022.4409137-CDS-H-elongata_contig6386:6701..68001622931022.4409137-CDS-H-elongata_contig6386:6701..6800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 6702..6800 -
1691679665.9133852-CDS-H-elongata_contig6386:6701..68001691679665.9133852-CDS-H-elongata_contig6386:6701..6800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 6702..6800 -
1622931022.4645274-CDS-H-elongata_contig6386:7040..71381622931022.4645274-CDS-H-elongata_contig6386:7040..7138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 7041..7138 -
1691679665.9285758-CDS-H-elongata_contig6386:7040..71381691679665.9285758-CDS-H-elongata_contig6386:7040..7138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 7041..7138 -
1622931022.4814403-CDS-H-elongata_contig6386:7526..76621622931022.4814403-CDS-H-elongata_contig6386:7526..7662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 7527..7662 -
1691679665.940868-CDS-H-elongata_contig6386:7526..76621691679665.940868-CDS-H-elongata_contig6386:7526..7662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6386 7527..7662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6386.13963.1prot_H-elongata_contig6386.13963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6386 3378..7662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6386.13963.1

>prot_H-elongata_contig6386.13963.1 ID=prot_H-elongata_contig6386.13963.1|Name=mRNA_H-elongata_contig6386.13963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
RLLHDARANHPHEEAHSEKGDYLKNMVFGGLDGILTSFSIVAGSAGGQLP
PAVVLVLGFSNIFANALSMGVGEYLSSKAHNEYVMAEKKREEWELKNHRE
GEILEMVQIFVERGMNQEDAEDVINKMAKYDDFFVNLMMNEELGLQVPTG
DENDTIKEGFVMFISFAIFGAMPLLGYVIVPAIKPESSEDVLFAVACIVT
AATLFTMGAIKSQFGTRQWYTSGAEMLLLGGACAALAYEIGMIVNGILPD
SYHD*
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mRNA from alignment at H-elongata_contig6386:3378..7662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6386.13963.1 ID=mRNA_H-elongata_contig6386.13963.1|Name=mRNA_H-elongata_contig6386.13963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4285bp|location=Sequence derived from alignment at H-elongata_contig6386:3378..7662- (Himanthalia elongata Himel1 dioecious)
AGGCTCCTTCACGATGCCCGGGCAAATCATCCCCACGAGGAGGCGCATAG TGAAAAAGGAGACTACCTCAAGAACATGGTGTTCGGTGGTCTAGACGGCA TTCTTACGAGCTTTTCCATCGTTGCTGGTTCGGCAGGTGAACTTCACCGG GGAACATTTTGATTGTCTGGTATGGTATGCCGCGGTGATCTGGTATGCTA TGCAGCAGCACAGCACTTCACATCGCCATGTAAATCAATTGACTGTACAC CTATTGCAATGTGCGATGTGCATATAGATGTATATATATATATATTCGGC CATCGCTGTTGATGTGGTGTATAGCTAACAATTGACGGTGAGCATTAGTT GAATCATTTTATATGACGTGACGCTTACCGTGTGTGGTCATGATGTCATT ACATATAGCAGAGTAAGGATCAATCGAATTTGGTTGCCTCGTGCTTGTCG TATATTATATATATATATGTATATATATAACCATGTATATGCCAATCTCT CTATCTGTCTATCTGTATCGCTAGGAGGGCAGCTTCCCCCGGCCGTTGTC CTGGTACTGGGGTTCAGTAACATTTTCGCCAATGCACTCAGTATGGGCGT TGGAGAGTACCTCAGCAGCAAGGTGAGGTCAAGGTACATAATTCAATACG CCTCGCTCGCCGTACTTGCGCTTTGTTGATATTCGATTAGATTATTCTTC ATGCCCTAACAAGAGCCAATTCAAAGTTTTACGTGGTTCAATATATGTCA TCGTAAAGGCAGAATAATTTACTGATCAATGCTGCCACACATGCCGCACA TTCCGGAAGCACTAGAGCCTTACTATACTATACTGGTACTGTCTTGATGG TTCTTTGGACAGGCTCACAATGAATATGTAATGGCTGAGAAGAAGCGGGA AGAGTGGGAGCTGAAGAACCACAGGGAAGGAGAGATTTTGGAAATGGTCC AAATATTCGTGGTATGTACAGTGAATGCACACAAACCCTTGCGCTCAGAT CTAACCGCGAGTGCTTAATTTTTAATTTATGTCAGTGATATGAATAGTTC CAGTGCAATGGCGATCTAACCGCTAGAATATTATGTCAATAATCCCTCCC GATTTAGCTTGAAATGTCGACCAGATACCTTTGGTTCAGATATGTATCGT ATAGGGTTGTTACCAGCCATCGCCGTAACACGCAAGATGCTAAATTAGGA CCGGGAAAATTAGCTTCGCTAAGGGCGGGTATTAACAGGGTCACAAAAAA ATTAATTCCAGTCGATTTAAATTTAAATCGGGCTCTGTTTGGTCGAAAGC GTAATGACGCCTAGCCTTCGCCCAATCAGGGTCCGATTTCAATTTGAATC GGCTGAAACTAAAATTTTTGTAACCCTGTTAATACCCGCCTTAATAACAT GATAATATCACCTAACCTAAATCCAATCTCCAATGCGTTCTTATTTATTT CAGCTTCTGCCATTGATGCCATTCGACGTGATGAAATACCAATTCTACCT ACTGCAACGTTGCCCATCCCTCATGTATTAATAGTTGTAAGAGATCAATC AACCATCAATTATCAAATATCTCTCATCTCCCCGGTTCACACCTACAGCG CTTTATCGCGATAGAAGTTAAGCACTCCTCCACCTCGTCAATAAATGGCT GGGCGTTGCTTACCTCTATCCTCACGCTTTCCGCCACAACAACATATAGA CTATAAAGAACCAATCCTACTGAAATTCGAACTCATGGCACTATCAGGCT ATTATATATATATATATATATCGTGGGCATTCGTTAGAATAGATTACTCG GGCGTATGCCAGTCGTCCTTTCTGGTCGTGGCAAAACTGCCTTGATGTGC ATATTGTATTTTCTTGTCTTGTCTCTAGGAACGAGGAATGAACCAAGAAG ATGCTGAGGACGTTATCAATAAAATGGCGAAGTATGATGACTTCTTTGTC AATCTCATGATGAACGAGGAGCTTGGGCTTCAGGTGTGTGATGACTTTTC AGTGTATTTCGGATGATAGGGTGATTTTATTCACTTGTCGTCGCGTGCTC AGTTCGGTCCGTACCGACTCTACGAGCTAAGCGGTATTTTCTGAGATAGA AGGGGTGTCTGCAAAAGCTGTCCTTTGATTCAATATACTCAAAATATGTC GAACGATTTTCAACTCTAAAGTTCTCTGATGGATTTTCTTAAGTTTATCT CCATTATCTCTATCATGGGGAAAAACCCGATCTTGAAGCCAGCAGGTTGA GGAGGGGGGAAATAAAAACAGTCATACGCCGCCTCCGAAACTGTCTGTGG CTGTATCGATATCGATAGTGAGTGTTGGAAAAGAGAGGCGTACAATAATT GGTCCATGTTGTCACCCCATATATTCTGGACGTCGGACTTGTGGACGCAC CAGTCGGGATAGGATAGGGTCATTCAGGAGGAAGGTCACACATTATTTCT ACGCCTTCCTTCTGCGGTACTTGCCGTAATTTTTTATCACGAGAAGGATT CAGCCGTCCTTTCCTCGTCGGCCATGAAGTCGAATTTTGTGTAGACTACC CACGAAATAATCGTTCTCCACTTGTTGGGCATCATGTCAGAGAAAATCCC AGTTTGTGTATTTAGGCCGAGATATGAACTCACGTCCCAACGTTAGAATG TCTCGAAGTTACCAAATGATCCACCAGGGCGACGGTGGCGTTACATGAAT AGGCTGCACCCGTTACTCACGTTACCTTGAGGACTGCTGGCTAAGTGCCG GCTAACTCTCGGTGGTAAACGCCATCGGTACGCAATTGCGTCGCCTGATG AAAGCGGGATTGACCCGATGGCGGTAGACGGTAGAGATGGACACCATCGA GGAAAACGGGAGGATCGAGAGGATCCCGGGAGTACGCGACAGATTCAGCC TGGGTTGAATGGACAGGATGACGCACGACGGAACCCGTCTGCTGACCACA AATATGAGGCAACCAAATCTGGTTGATCCTTACTCTGATATATGTGATGT TGTCATGACCACACACACATACAAGAGAGAGAGGAGCGCTCTAGTCTATT AACAAATGGAGATGAAACTTGGACAAATAATGTACCAGGTATTTCTTTAT AGATTTACTAGTATTTGAAGTGTACAAAAGTGGTGCTCTCGTCATATTTT TCTATCAAACTTTTTTCTTGAAAAACATATAAACTATTTCAAACCCTCTT AGCACCATAATATTATACCAATACTAATACCAATGTCGCCCGTCTCTCAT GTGGTCCTAAGGGATCATCCAACATGTTACGATTTGTGCTGTATTGCGAT GCAATTTCACCTCGTCTAATTACTGAACTTTGCTTACTCCCGTTCTCGTT TACCGAAAGAATAAATCATAGTGGAATTGGAACCCATGGTATCCGCACCA ATATCTTAGTGCTGTACGTTGTTACCATCTTTGGTGAAAATGATGCAGGC TCCGCAACTTGTACGCCGTTTGTTGAATACTTCTTCTGACTATTCCAGGT TCCTACCGGAGACGAAAATGACACTATCAAAGAAGGATTCGTAATGTTCA TTTCATTCGCCATTTTTGGTGCAATGCCGCTGCTGGGGTGAGGAGCTATG TAGCAGATGTTTCTTCTTTCTGCGTGTGTATATATTTATCAATATATGAC TAACTCGATGTCAGACTTTTGTAGACAATTATCGCAAACCCGAAAACGGG ATACTTTCCTGGCTTAGACATGAAGAACTAGTAATAAATGGCTTGTATAC GGCTTTCCGTCTAGAAGTAATGCAATCATTCACGCAACACACGCGCGGGA TACCTCAGATATGTCATCGTTCCTGCGATCAAGCCTGAATCATCTGAAGA TGTTCTGTTCGCTGTAGCTTGCATCGTGACCGCTGCCACGTTATTCACTA TGGGAGCGATCAAGGTAAGCCGATAGAACTTTTGCGTTATCTCTTCGTGA AGAATTTTCCCCTGTAAACATGCAAACGCCACTTATTCAGCGTGTAGTTT TTTAGGATGGACCCCTACTCGATTCTATACTACTACTAGTATGACATTGG TATAACAATGGAGCATAAATCGTACTCTTGACTCCATCCTGATTCATCGC GCCACATGATAGAATGCTCTCTCTATTCAAAATACGTTCCTTTACCGTTA CAGAGTCAGTTCGGAACCCGCCAGTGGTACACATCGGGCGCAGAGATGCT GCTTCTGGGTGGAGCTTGTGCTGCGCTGGCGTACGAGATTGGAATGATAG TCAATGGGATTCTGCCGGATTCATATCACGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig6386:3378..7662-

>mRNA_H-elongata_contig6386.13963.1 ID=mRNA_H-elongata_contig6386.13963.1|Name=mRNA_H-elongata_contig6386.13963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig6386:3378..7662- (Himanthalia elongata Himel1 dioecious)
AGGCTCCTTCACGATGCCCGGGCAAATCATCCCCACGAGGAGGCGCATAG
TGAAAAAGGAGACTACCTCAAGAACATGGTGTTCGGTGGTCTAGACGGCA
TTCTTACGAGCTTTTCCATCGTTGCTGGTTCGGCAGAGGCTCCTTCACGA
TGCCCGGGCAAATCATCCCCACGAGGAGGCGCATAGTGAAAAAGGAGACT
ACCTCAAGAACATGGTGTTCGGTGGTCTAGACGGCATTCTTACGAGCTTT
TCCATCGTTGCTGGTTCGGCAGGAGGGCAGCTTCCCCCGGCCGTTGTCCT
GGTACTGGGGTTCAGTAACATTTTCGCCAATGCACTCAGTATGGGCGTTG
GAGAGTACCTCAGCAGCAAGGAGGGCAGCTTCCCCCGGCCGTTGTCCTGG
TACTGGGGTTCAGTAACATTTTCGCCAATGCACTCAGTATGGGCGTTGGA
GAGTACCTCAGCAGCAAGGCTCACAATGAATATGTAATGGCTGAGAAGAA
GCGGGAAGAGTGGGAGCTGAAGAACCACAGGGAAGGAGAGATTTTGGAAA
TGGTCCAAATATTCGTGGCTCACAATGAATATGTAATGGCTGAGAAGAAG
CGGGAAGAGTGGGAGCTGAAGAACCACAGGGAAGGAGAGATTTTGGAAAT
GGTCCAAATATTCGTGGAACGAGGAATGAACCAAGAAGATGCTGAGGACG
TTATCAATAAAATGGCGAAGTATGATGACTTCTTTGTCAATCTCATGATG
AACGAGGAGCTTGGGCTTCAGGAACGAGGAATGAACCAAGAAGATGCTGA
GGACGTTATCAATAAAATGGCGAAGTATGATGACTTCTTTGTCAATCTCA
TGATGAACGAGGAGCTTGGGCTTCAGGTTCCTACCGGAGACGAAAATGAC
ACTATCAAAGAAGGATTCGTAATGTTCATTTCATTCGCCATTTTTGGTGC
AATGCCGCTGCTGGGGTTCCTACCGGAGACGAAAATGACACTATCAAAGA
AGGATTCGTAATGTTCATTTCATTCGCCATTTTTGGTGCAATGCCGCTGC
TGGGATATGTCATCGTTCCTGCGATCAAGCCTGAATCATCTGAAGATGTT
CTGTTCGCTGTAGCTTGCATCGTGACCGCTGCCACGTTATTCACTATGGG
AGCGATCAAGATATGTCATCGTTCCTGCGATCAAGCCTGAATCATCTGAA
GATGTTCTGTTCGCTGTAGCTTGCATCGTGACCGCTGCCACGTTATTCAC
TATGGGAGCGATCAAGAGTCAGTTCGGAACCCGCCAGTGGTACACATCGG
GCGCAGAGATGCTGCTTCTGGGTGGAGCTTGTGCTGCGCTGGCGTACGAG
ATTGGAATGATAGTCAATGGGATTCTGCCGGATTCATATCACGATTAGAG
TCAGTTCGGAACCCGCCAGTGGTACACATCGGGCGCAGAGATGCTGCTTC
TGGGTGGAGCTTGTGCTGCGCTGGCGTACGAGATTGGAATGATAGTCAAT
GGGATTCTGCCGGATTCATATCACGATTAG
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