mRNA_H-elongata_contig63859.13962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63859.13962.1
Unique NamemRNA_H-elongata_contig63859.13962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63859.13962.1 vs. uniprot
Match: D7FWZ3_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ3_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.810e-12
Identity = 66/148 (44.59%), Postives = 78/148 (52.70%), Query Frame = 3 
Query:    3 DSAQQCLMASGYDTNLAAEYCVTGIPRGRAAYA---SPAPTPPKADARNRSKTLIGNNVVPMGANNSGGGGLSASNGWRRWSYDPYGASITSGTSSGGGNGLGSTVPGAGAPGGWSGNPGLXXXXXSGYRVEPAKDSSGALDWRSMPR 437
            D+A+  L ASGYDTNLAAEYCVTGIP  RAA     SPA  P  + +R R K LIGNNVVP G N+ G   + A   WRR S    G + T   S+GGG G                  G       G  V+ A  ++G LDWR+MPR
Sbjct:  139 DAARLALRASGYDTNLAAEYCVTGIPPDRAASVAALSPAAAPAPSSSRGR-KGLIGNNVVPSGGNSVG---VPA---WRRASAG--GGTQTGAVSNGGGYG------------------GAMTAAWGGAAVDGAGRTTG-LDWRNMPR 258
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BLAST of mRNA_H-elongata_contig63859.13962.1 vs. uniprot
Match: A0A6H5KRK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.150e-12
Identity = 69/148 (46.62%), Postives = 81/148 (54.73%), Query Frame = 3 
Query:    3 DSAQQCLMASGYDTNLAAEYCVTGIPRGRAAYA---SPAPTPPKADARNRSKTLIGNNVVPMGANNSGGGGLSASNGWRRWSYDPYGASITSGTSSGGGNGLGSTVPGAGAPGGWSGNPGLXXXXXSGYRVEPAKDSSGALDWRSMPR 437
            D+A+  L ASGYDTNLAAEYCVTGIP  RAA     SPA TP  + +R R K LIGNNVVP G N+   GG+ A   WRR              S+GGG     T  GA + G   G  G       G  V+ A  ++G LDWR+MPR
Sbjct:  361 DAARLALRASGYDTNLAAEYCVTGIPPDRAASVAALSPAATPAPSSSRGR-KGLIGNNVVPSGGNS---GGVPA---WRR-------------ASAGGG-----TQTGAISNGXXYG--GAMTAARGGAAVDGAGRTTG-LDWRNMPR 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63859.13962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWZ3_ECTSI1.810e-1244.59UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRK2_9PHAE4.150e-1246.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63859contigH-elongata_contig63859:1061..2724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhox homologous domain
Ec32 orthologEc-15_001130.1
Exons1
Model size1664
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63859.13962.1prot_H-elongata_contig63859.13962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63859 1084..1578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.2707245-UTR-H-elongata_contig63859:1060..10831622931022.2707245-UTR-H-elongata_contig63859:1060..1083Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63859 1061..1083 +
1691679665.8433487-UTR-H-elongata_contig63859:1060..10831691679665.8433487-UTR-H-elongata_contig63859:1060..1083Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63859 1061..1083 +
1622931022.307884-UTR-H-elongata_contig63859:1578..27241622931022.307884-UTR-H-elongata_contig63859:1578..2724Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63859 1579..2724 +
1691679665.8590322-UTR-H-elongata_contig63859:1578..27241691679665.8590322-UTR-H-elongata_contig63859:1578..2724Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63859 1579..2724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931022.288981-CDS-H-elongata_contig63859:1083..15781622931022.288981-CDS-H-elongata_contig63859:1083..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63859 1084..1578 +
1691679665.8514109-CDS-H-elongata_contig63859:1083..15781691679665.8514109-CDS-H-elongata_contig63859:1083..1578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63859 1084..1578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63859.13962.1

>prot_H-elongata_contig63859.13962.1 ID=prot_H-elongata_contig63859.13962.1|Name=mRNA_H-elongata_contig63859.13962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MASGYDTNLAAEYCVTGIPRGRAAYASPAPTPPKADARNRSKTLIGNNVV
PMGANNSGGGGLSASNGWRRWSYDPYGASITSGTSSGGGNGLGSTVPGAG
APGGWSGNPGLGAGAGSGYRVEPAKDSSGALDWRSMPRSTGGGRDVNGYS
SATNGSGGGGIVDV*
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mRNA from alignment at H-elongata_contig63859:1061..2724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63859.13962.1 ID=mRNA_H-elongata_contig63859.13962.1|Name=mRNA_H-elongata_contig63859.13962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1664bp|location=Sequence derived from alignment at H-elongata_contig63859:1061..2724+ (Himanthalia elongata Himel1 dioecious)
AGGACTCGGCGCAGCAGTGCTTGATGGCCTCCGGATACGACACCAACCTT
GCTGCTGAGTACTGCGTCACGGGCATACCTCGCGGCCGCGCGGCGTACGC
TTCCCCGGCGCCGACGCCGCCCAAGGCGGACGCGCGTAATCGGTCAAAGA
CTTTGATTGGCAACAACGTTGTTCCAATGGGTGCCAACAACAGCGGTGGT
GGAGGGCTTTCCGCAAGCAACGGGTGGCGACGTTGGTCGTACGATCCGTA
CGGTGCTTCGATAACGAGTGGTACGAGCAGCGGTGGCGGCAACGGACTCG
GTAGTACCGTGCCCGGTGCTGGGGCGCCCGGGGGATGGAGCGGGAACCCA
GGCTTGGGCGCCGGCGCCGGCTCTGGGTATCGCGTGGAACCCGCGAAAGA
CTCAAGCGGGGCACTTGATTGGCGATCCATGCCGCGGTCGACGGGGGGCG
GGCGAGATGTGAATGGCTATTCTTCGGCAACGAATGGAAGCGGGGGCGGA
GGAATCGTTGACGTTTGATATATTTTTCTTCTTTGGTGTACGTAGTCCGG
TATGAAGGCTTTTTGTCGGGGTTTGAAGCTCTTGCGACGCGTGTACGACT
AGAATAAGCCACATGCAGGCAGGTAGGTCTGCGTCCGGGGATCGGGGATG
TTTTTTTTGTCTTGCTTTTGTTAGAATCGTCAAAACCTGCGATTTGATGA
TTCTCTCTGCCCTCTTGAAAACTATGGCTGCCAGCACAAAGCGCGCACCG
TCCTTTTTTCCCTCCCGCTGAACGCCGTTGATCGTTCCTATTTCGGCGTA
CAGCAGAGCTATTGTGACTCTAATATGCGATAATCAGCGTTCCACGGTTT
CGAAAACTTTCCGCTGCGAGCACGTCCTTTGTTAGCTGCCTTGGTTGTGT
TACGGGTGAGTTATTGATGCGTGATCGCCGTTTGCTAGGATTGTCAGCTG
AATCGCCTTTTCTACGCTTGTATAGTGCGTTAGGACATGTATTTTAGGAT
GGCCAGCCGCCCCCAAAACGTTGGCTCTTACGGCGTGTCAGGACCGCCTT
AAACGCCCCGGGTCCTCTCGCACCAGCGCGGGGGAGTTGATGGCAGTATA
GCTGTTTTTGTGATAATCCGGACATTGTTCTCTTCTCTGGAGATCAGGGG
GGAGGCTGACGTGACGTGTGCGCTAGCCGAAAATGATATGAAGGGAGTGA
AGAGAAAAAAGAGATGGCCAAGCATTTGATTGTGCCCCAGCGAGAAAATA
CCCTTTTAGAAAGTCATGTTTTTGTCTTCTCTCTGATGTCGCGGTTACTT
GTAGTCGACGCTGTTCGCAAAACAGCACTACTTGCAAAAGACAAAAACAA
GCAAACAAACGTAGGTTCGTGGTGTGTGCTGATGCATGAAAAAGAGAGCG
AAGAGCGCTTATATCTTTGATGCCGGTTCTTAGTGGTTTCATTCTATTAT
GCTGTGAATCGGTCCTACAGCAGCCCGAATGAGTTATTTTGTGTGCCGTC
TTTGAGTTTCTGATGGTTACTTGGCATGGTATGATAATTATGTTCATAAA
TAGTAAAAGGCCTTTGCCGTTTGGTGAGGGGGTGCTCAATTTTTGCATGC
GCTAATTGTTGGATCAATTTATTGACCACGCGTCCTCGAGAGGATGGAGC
ATTGCCCCTTTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig63859:1061..2724+

>mRNA_H-elongata_contig63859.13962.1 ID=mRNA_H-elongata_contig63859.13962.1|Name=mRNA_H-elongata_contig63859.13962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig63859:1061..2724+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCGGATACGACACCAACCTTGCTGCTGAGTACTGCGTCACGGG
CATACCTCGCGGCCGCGCGGCGTACGCTTCCCCGGCGCCGACGCCGCCCA
AGGCGGACGCGCGTAATCGGTCAAAGACTTTGATTGGCAACAACGTTGTT
CCAATGGGTGCCAACAACAGCGGTGGTGGAGGGCTTTCCGCAAGCAACGG
GTGGCGACGTTGGTCGTACGATCCGTACGGTGCTTCGATAACGAGTGGTA
CGAGCAGCGGTGGCGGCAACGGACTCGGTAGTACCGTGCCCGGTGCTGGG
GCGCCCGGGGGATGGAGCGGGAACCCAGGCTTGGGCGCCGGCGCCGGCTC
TGGGTATCGCGTGGAACCCGCGAAAGACTCAAGCGGGGCACTTGATTGGC
GATCCATGCCGCGGTCGACGGGGGGCGGGCGAGATGTGAATGGCTATTCT
TCGGCAACGAATGGAAGCGGGGGCGGAGGAATCGTTGACGTTTGAATGGC
CTCCGGATACGACACCAACCTTGCTGCTGAGTACTGCGTCACGGGCATAC
CTCGCGGCCGCGCGGCGTACGCTTCCCCGGCGCCGACGCCGCCCAAGGCG
GACGCGCGTAATCGGTCAAAGACTTTGATTGGCAACAACGTTGTTCCAAT
GGGTGCCAACAACAGCGGTGGTGGAGGGCTTTCCGCAAGCAACGGGTGGC
GACGTTGGTCGTACGATCCGTACGGTGCTTCGATAACGAGTGGTACGAGC
AGCGGTGGCGGCAACGGACTCGGTAGTACCGTGCCCGGTGCTGGGGCGCC
CGGGGGATGGAGCGGGAACCCAGGCTTGGGCGCCGGCGCCGGCTCTGGGT
ATCGCGTGGAACCCGCGAAAGACTCAAGCGGGGCACTTGATTGGCGATCC
ATGCCGCGGTCGACGGGGGGCGGGCGAGATGTGAATGGCTATTCTTCGGC
AACGAATGGAAGCGGGGGCGGAGGAATCGTTGACGTTTGA
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