mRNA_H-elongata_contig63832.13958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63832.13958.1
Unique NamemRNA_H-elongata_contig63832.13958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: D8LTB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB9_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.160e-34
Identity = 61/72 (84.72%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFNFYVIFQ 216
            AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRA+FL+FVGV+CFSL + +A++AGALMMVNA FNFYVIF+
Sbjct:   95 AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFK 166
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A836CFZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.740e-24
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFNFYVIFQ 216
            AF+CILCCFETH+  +A   A+NFGFLYNAKGRALFL+FVG++CFS  ++L YI+G  M+ ++ FNF+VI +
Sbjct:   41 AFACILCCFETHISFIASLAASNFGFLYNAKGRALFLLFVGILCFSFGSILGYISGIAMIADSIFNFFVILK 112
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A482T2R9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2R9_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 2.230e-18
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    4 FSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFNFYVIFQ 216
            FSC+LCCFETHLK V+K IA NFGF+Y+AK R+LF++F+G I FS + L   I G  M+ NA FN + +F+
Sbjct:   27 FSCLLCCFETHLKQVSKIIAMNFGFMYSAKSRSLFMIFIGTILFSFS-LFGKIIGLCMLANAGFNLFAVFR 96
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: W7TT71_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT71_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.480e-17
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFN 198
            AFSC+LCCFE +L+ VAK IA NFGFLY+AK RA FL+FVGV+CFSL  +   +AGA M+ NA FN
Sbjct:  124 AFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFN 188
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A6U4HF89_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HF89_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.670e-17
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    4 FSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFNFYVIFQ 216
            FS ++CCFETH K VA  I  NFGF+Y+A GR  F++FVG++C+SL  ++ YIAGALM+VNA   FY++++
Sbjct:  136 FSVLICCFETHFKQVALLIQDNFGFMYDATGRFFFMIFVGILCWSLG-IIGYIAGALMIVNACVGFYIMYK 205
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A7S2WC07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC07_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.000e-12
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    4 FSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFNFYVI 210
            F C++CCFETHLK V+  IA NFGF+YNAKGR +F++ +  +C +L      I G LM   A +N YVI
Sbjct:  132 FGCLVCCFETHLKQVSIIIADNFGFMYNAKGRFIFMILMATLCMTLNVF-GQITGGLMYGVALYNLYVI 199
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A7S2MMX0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MMX0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.310e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    4 FSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFNFYVIFQ 216
            F C+ CC+ETHLK V+  IA NFGFLYNAK R LF++ +  +C++L  ++  I   L +     N YV+F+
Sbjct:  131 FGCLFCCYETHLKQVSVFIADNFGFLYNAKARCLFMMLIATLCYTLN-IIGMITAFLCVAAVCLNVYVLFK 200
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A4D9D7K6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7K6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.520e-9
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   43 VVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTLLAYIAGALMMVNAAFN 198
            +VAK IA NFGFLY+AK RA FL+FVGV+CFSL  +   +AGA M+ NA FN
Sbjct:  123 LVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLG-ITGKVAGAAMIANALFN 173
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BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Match: A0A7S3JYJ7_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYJ7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.430e-7
Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTL--LAYIAGALMMVNAAFNFYVIFQ 216
            AF+ ++  FE H+  + K IA N GF+Y A GRA F++ +G++CFS   L    Y  G  ++V A  N +++F+
Sbjct:  133 AFAILIFTFECHVSFLGKVIADNLGFMYQAPGRASFMILLGMLCFSDEPLPGFGYFVGIFVIVTALLNAFIMFK 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63832.13958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LTB9_ECTSI2.160e-3484.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CFZ2_9STRA3.740e-2461.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482T2R9_9ARCH2.230e-1856.34Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7TT71_9STRA1.480e-1765.15Golgi apparatus membrane protein TVP15 n=1 Tax=Nan... [more]
A0A6U4HF89_9STRA2.670e-1754.93Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WC07_9STRA1.000e-1250.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2MMX0_9STRA1.310e-1145.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9D7K6_9STRA2.520e-963.46Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3JYJ7_9STRA3.430e-737.84Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63832contigH-elongata_contig63832:159..1437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D8LTB9
EggNOG free text desc.COPI associated protein
EggNOG OGs28NJZ@1,2SB3I@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-12_005990.1
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.8571718-CDS-H-elongata_contig63832:158..2701622931021.8571718-CDS-H-elongata_contig63832:158..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63832 159..270 -
1691679665.6877258-CDS-H-elongata_contig63832:158..2701691679665.6877258-CDS-H-elongata_contig63832:158..270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63832 159..270 -
1622931021.880029-CDS-H-elongata_contig63832:1321..14371622931021.880029-CDS-H-elongata_contig63832:1321..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63832 1322..1437 -
1691679665.6999373-CDS-H-elongata_contig63832:1321..14371691679665.6999373-CDS-H-elongata_contig63832:1321..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63832 1322..1437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63832.13958.1prot_H-elongata_contig63832.13958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63832 159..1437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63832.13958.1

>prot_H-elongata_contig63832.13958.1 ID=prot_H-elongata_contig63832.13958.1|Name=mRNA_H-elongata_contig63832.13958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRALFLVFVGVICFSLTTL
LAYIAGALMMVNAAFNFYVIFQVGR*
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mRNA from alignment at H-elongata_contig63832:159..1437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63832.13958.1 ID=mRNA_H-elongata_contig63832.13958.1|Name=mRNA_H-elongata_contig63832.13958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1279bp|location=Sequence derived from alignment at H-elongata_contig63832:159..1437- (Himanthalia elongata Himel1 dioecious)
GCTTTCTCGTGTATCCTGTGCTGCTTCGAGACGCATCTGAAGGTGGTAGC
CAAGACCATCGCGGCCAACTTCGGCTTCCTCTACAACGCCAAGGGGAGGG
CGCTTTTCCTGGTGTTGTGAGTCTTCAGCGCGTTGGGGGAAGAGTATAGT
AATTAGTCTTCCTTGTGTGTCTAGTGCTGGTAGGAGTTTTCGTCCCGTTG
GCGTTTTCCTTTGATATAGTATTATAGTGTATTATAGTGTGAATAATACT
GCACGCTACTGGAGGGAGTTATCCCGTTTAACGTGGATGTGTTATGTGGG
TGTGGAGTCTGTGCGAGTATATGTGAATACTGAATACTGTAGGTAGAGTT
GGAGACTCGGCCGCTTTTATCTCCTGAAATTATTTCGTTTCACTTCACTT
GGATTTTGCTCTTGTTTTTGTTTGCACCGATTCTAGCGCATGCGTGCTTG
TTTGTTTGTGTGTATGTGTATGTGTGTATCTTTTCAATTGTACATAACAG
CGCAATCCGACTCTGCCATGTTAGTCCTTTTAGGCTACACGCATAAATCC
GTATCTGGGTGTGTGATTATTATTTGCACAAAACCACACATTCCGGCCCT
GTCATGCTATGCAGTCATTCTAGACTACTCGTATTGGTCCCCTCCCAATG
GGGGATCAACTATAGCTTATTTGTAACGAAGACCTCTGATGAGACTTGAC
AAATAGGGCATACTCTCTTCTTCAGTTCATATCTAAGTCATTATTATAGT
GTGTGTGTCGAAAAGGGAAGAAAAATATGGAGGTGAGAATCAAGAACTGC
GTCAACAACGTAACTAGAAATTATATCACGGGACAGCACGCTGCAGAAAA
CGCCTCCGAGTGCGAAATGATATGGGGATCGGAGGATCGTTTCCCGTTGA
GAAACAAAAGATCCGGTTGGCTTGCGCAGAGCATCAAGGCTGATGCTCGG
AGAGAAGGGCAGTCCCATGTCACCGTTCTGCCTGCGTGCTGTACGTCGAA
GGGAACTTTCCTACATCCAGCTAACCCTGACGATGACGTGTGGTGTCGTG
TGTGCGGGATAAGCGCTGCTCAGTCTTATTTTCCCCTCGCGTTTTGCGTT
TTTCCGCGACGTTGCCCCGTGTTTCCTTCCTCTTTACGAACTCCTGACTT
TCTTCCTCTTCTCTCAGCGTGGGAGTGATTTGCTTCAGCCTCACGACCCT
TTTGGCGTACATCGCCGGCGCGCTGATGATGGTGAATGCCGCCTTCAACT
TCTACGTTATTTTCCAGGTGGGTCGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig63832:159..1437-

>mRNA_H-elongata_contig63832.13958.1 ID=mRNA_H-elongata_contig63832.13958.1|Name=mRNA_H-elongata_contig63832.13958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig63832:159..1437- (Himanthalia elongata Himel1 dioecious)
GCTTTCTCGTGTATCCTGTGCTGCTTCGAGACGCATCTGAAGGTGGTAGC
CAAGACCATCGCGGCCAACTTCGGCTTCCTCTACAACGCCAAGGGGAGGG
CGCTTTTCCTGGTGTTGCTTTCTCGTGTATCCTGTGCTGCTTCGAGACGC
ATCTGAAGGTGGTAGCCAAGACCATCGCGGCCAACTTCGGCTTCCTCTAC
AACGCCAAGGGGAGGGCGCTTTTCCTGGTGTTCGTGGGAGTGATTTGCTT
CAGCCTCACGACCCTTTTGGCGTACATCGCCGGCGCGCTGATGATGGTGA
ATGCCGCCTTCAACTTCTACGTTATTTTCCAGGTGGGTCGATAGCGTGGG
AGTGATTTGCTTCAGCCTCACGACCCTTTTGGCGTACATCGCCGGCGCGC
TGATGATGGTGAATGCCGCCTTCAACTTCTACGTTATTTTCCAGGTGGGT
CGATAG
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