mRNA_H-elongata_contig63804.13955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63804.13955.1
Unique NamemRNA_H-elongata_contig63804.13955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63804.13955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63804contigH-elongata_contig63804:2..1504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1356
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63804.13955.1prot_H-elongata_contig63804.13955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63804 181..861 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.5159857-UTR-H-elongata_contig63804:1..1801622931021.5159857-UTR-H-elongata_contig63804:1..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63804 2..180 +
1691679665.6139834-UTR-H-elongata_contig63804:1..1801691679665.6139834-UTR-H-elongata_contig63804:1..180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63804 2..180 +
1622931021.5481083-UTR-H-elongata_contig63804:861..12801622931021.5481083-UTR-H-elongata_contig63804:861..1280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63804 862..1280 +
1691679665.6308014-UTR-H-elongata_contig63804:861..12801691679665.6308014-UTR-H-elongata_contig63804:861..1280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63804 862..1280 +
1622931021.5618944-UTR-H-elongata_contig63804:1427..15041622931021.5618944-UTR-H-elongata_contig63804:1427..1504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63804 1428..1504 +
1691679665.6393063-UTR-H-elongata_contig63804:1427..15041691679665.6393063-UTR-H-elongata_contig63804:1427..1504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63804 1428..1504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931021.532776-CDS-H-elongata_contig63804:180..8611622931021.532776-CDS-H-elongata_contig63804:180..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63804 181..861 +
1691679665.6222146-CDS-H-elongata_contig63804:180..8611691679665.6222146-CDS-H-elongata_contig63804:180..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63804 181..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63804.13955.1

>prot_H-elongata_contig63804.13955.1 ID=prot_H-elongata_contig63804.13955.1|Name=mRNA_H-elongata_contig63804.13955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MPRKEIEAFSEGNGPVPQQEDYGSEEPTLAEFLRLAKEQLGRWEKQLDKM
LEDGRNTDKRLTCLEQDVRQSRLANEADGSADTKTRERKEGAAKAVQAMD
GESCSVNRVDLNPMFSTGFGTNHTGPLAAPCSGDNAPVENGALTPKSCLI
FKEMRKSTDSGGFRPTGETSTATKTGFDTPTLWLYPTKEMKFFHLSVPFF
RWVIKTKTEENRIFDPGGQRGPLRAS*
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mRNA from alignment at H-elongata_contig63804:2..1504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63804.13955.1 ID=mRNA_H-elongata_contig63804.13955.1|Name=mRNA_H-elongata_contig63804.13955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1503bp|location=Sequence derived from alignment at H-elongata_contig63804:2..1504+ (Himanthalia elongata Himel1 dioecious)
CAGGAAGGTCGTCTTCCGGTAAATCACCTAGGTCCTAAAGGGACATTCAT
TGTGTCTCCCCTATGCGGTGCTGTTAATACAATATGGTTATATAAATCCT
CTTCTCCAAGACTCTTTACCTTCCCTCTGGCGAGGGTGTATCAACACACT
AGTGTACTCAGCGCTGAGTTTACCCTAACATGCCAAGGAAGGAGATCGAA
GCTTTCTCCGAGGGCAATGGCCCCGTCCCCCAGCAAGAAGATTATGGGTC
TGAAGAACCCACGCTGGCGGAATTCTTACGACTAGCCAAAGAACAACTAG
GTCGATGGGAAAAACAGCTCGACAAGATGTTGGAAGATGGAAGAAATACA
GACAAGCGTCTGACATGCTTAGAACAGGACGTTCGGCAGTCACGTCTTGC
CAATGAGGCAGACGGATCAGCAGACACGAAGACTCGCGAGCGCAAGGAGG
GCGCCGCTAAAGCAGTTCAAGCAATGGATGGGGAAAGCTGTTCTGTAAAC
CGGGTTGACCTCAACCCGATGTTTTCTACTGGCTTCGGTACTAACCACAC
CGGACCTCTGGCAGCCCCTTGCTCAGGGGATAATGCCCCGGTAGAAAATG
GCGCTTTGACGCCCAAGTCGTGTCTCATATTCAAAGAGATGCGCAAATCT
ACTGACTCTGGTGGCTTCCGTCCCACCGGTGAAACCTCGACGGCAACGAA
GACCGGCTTCGACACACCCACTCTTTGGCTCTACCCGACCAAGGAAATGA
AGTTCTTCCACTTGTCTGTTCCCTTTTTCAGGTGGGTCATCAAGACAAAG
ACAGAAGAAAACAGGATATTCGATCCAGGTGGTCAACGAGGTCCTCTCCG
CGCCAGCTGAATTTTGGTACATGGCGGGCGTTGCTTCGTGGTGAGGTTAT
GCGTGTTGGGGCAGCTCGAAGAGGCTGCAGCGATACATTACCGGTATGGC
CTTTTTGTTTACTGATGGTGTTTTTTCCCATAAACAATAGAGTCTGACAT
TTCCATCAATAGGGTGAAACCACATTTTCTTCTCTTGGTAATCTCCCATT
ATGAAATTGCATGTAGCTTTTACAGAGAGATATAGTCAACGAGAGAGAAA
GTAATAAAATGTTATATGATTTCTACGACTCTTAGGGCTAGCACGTATCA
GTCGCAACTACGCGATAAAGGCCATATATTAGAATTGGGATTTTTCTTCG
ATATTGAACGATCTCGCTAGGTCAATGGGTTGAAACGAGTAGACAAGAAA
TACTCATTCCCCAGGTGTTCTCTCTGGGAGGGCCGTAAATTCCATCTGAT
CGTTGCCAAGTAAGTCGATGGCGTAGCGTATTAGGGAGGGCGGTCAACAA
GGCAGAAGTCACAAATTTTGCTTTCTGAATTCCATCTGATTATTGCTGAG
TTAATTGATGGCATAGCGTATTATCCTGGCATATACGTCTACTGCTGATA
GCGAATACGCGTTTAGGTTGCAAGCTGGACGAACAGGTCATTCTCGGCCT
CCA
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Coding sequence (CDS) from alignment at H-elongata_contig63804:2..1504+

>mRNA_H-elongata_contig63804.13955.1 ID=mRNA_H-elongata_contig63804.13955.1|Name=mRNA_H-elongata_contig63804.13955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig63804:2..1504+ (Himanthalia elongata Himel1 dioecious)
ATGCCAAGGAAGGAGATCGAAGCTTTCTCCGAGGGCAATGGCCCCGTCCC
CCAGCAAGAAGATTATGGGTCTGAAGAACCCACGCTGGCGGAATTCTTAC
GACTAGCCAAAGAACAACTAGGTCGATGGGAAAAACAGCTCGACAAGATG
TTGGAAGATGGAAGAAATACAGACAAGCGTCTGACATGCTTAGAACAGGA
CGTTCGGCAGTCACGTCTTGCCAATGAGGCAGACGGATCAGCAGACACGA
AGACTCGCGAGCGCAAGGAGGGCGCCGCTAAAGCAGTTCAAGCAATGGAT
GGGGAAAGCTGTTCTGTAAACCGGGTTGACCTCAACCCGATGTTTTCTAC
TGGCTTCGGTACTAACCACACCGGACCTCTGGCAGCCCCTTGCTCAGGGG
ATAATGCCCCGGTAGAAAATGGCGCTTTGACGCCCAAGTCGTGTCTCATA
TTCAAAGAGATGCGCAAATCTACTGACTCTGGTGGCTTCCGTCCCACCGG
TGAAACCTCGACGGCAACGAAGACCGGCTTCGACACACCCACTCTTTGGC
TCTACCCGACCAAGGAAATGAAGTTCTTCCACTTGTCTGTTCCCTTTTTC
AGGTGGGTCATCAAGACAAAGACAGAAGAAAACAGGATATTCGATCCAGG
TGGTCAACGAGGTCCTCTCCGCGCCAGCTGAATGCCAAGGAAGGAGATCG
AAGCTTTCTCCGAGGGCAATGGCCCCGTCCCCCAGCAAGAAGATTATGGG
TCTGAAGAACCCACGCTGGCGGAATTCTTACGACTAGCCAAAGAACAACT
AGGTCGATGGGAAAAACAGCTCGACAAGATGTTGGAAGATGGAAGAAATA
CAGACAAGCGTCTGACATGCTTAGAACAGGACGTTCGGCAGTCACGTCTT
GCCAATGAGGCAGACGGATCAGCAGACACGAAGACTCGCGAGCGCAAGGA
GGGCGCCGCTAAAGCAGTTCAAGCAATGGATGGGGAAAGCTGTTCTGTAA
ACCGGGTTGACCTCAACCCGATGTTTTCTACTGGCTTCGGTACTAACCAC
ACCGGACCTCTGGCAGCCCCTTGCTCAGGGGATAATGCCCCGGTAGAAAA
TGGCGCTTTGACGCCCAAGTCGTGTCTCATATTCAAAGAGATGCGCAAAT
CTACTGACTCTGGTGGCTTCCGTCCCACCGGTGAAACCTCGACGGCAACG
AAGACCGGCTTCGACACACCCACTCTTTGGCTCTACCCGACCAAGGAAAT
GAAGTTCTTCCACTTGTCTGTTCCCTTTTTCAGGTGGGTCATCAAGACAA
AGACAGAAGAAAACAGGATATTCGATCCAGGTGGTCAACGAGGTCCTCTC
CGCGCCAGCTGA
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