mRNA_H-elongata_contig63710.13942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63710.13942.1
Unique NamemRNA_H-elongata_contig63710.13942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63710.13942.1 vs. uniprot
Match: D7FSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.250e-23
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 1 
Query:    1 QVELEGSDQSEN--IDCVTVGIDDLVRVMPWFCIEVGDIVEIQVEALAGWIRGTVIRIDPAAMTYDVEVDLGTTDGICDTPESNEEKCRKIRCNDGGKEKRSSSTSVVYQVTDDRIRKICSGRQAIARQWKK 390
            +VEL G D+ E   +  +TVGIDD+VRVMPWFCIEVGD+VE Q+E    W+RGTV+ I      YDV ++    DG  D  E+  E        D  K++  +S + +Y+V +  IRK+ SGRQA A++WKK
Sbjct:  248 EVELSGDDEDEEGCVQHITVGIDDVVRVMPWFCIEVGDMVECQLEGTMIWLRGTVVNIHLEQALYDVALE-SCEDGQADGRETYGENDVAGGGGDCEKKQGEASPNTMYRVPESSIRKVVSGRQAAAKRWKK 378
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BLAST of mRNA_H-elongata_contig63710.13942.1 vs. uniprot
Match: A0A6H5JS13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS13_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-21
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:    1 QVELEGSDQSEN--IDCVTVGIDDLVRVMPWFCIE---VGDIVEIQVEALAGWIRGTVIRIDPAAMTYDVEVDLGTTDGICDTPESNEEKCRKIRCNDGGKEKRSSSTSVVYQVTDDRIRKICSGRQAIARQWKK 390
            +VEL G D+ E   +  +TVGIDD+VRVMPWFCIE   VGD+VE Q+E    W+RGTV+ +      YDV ++    DG  D   +  E        D  K++  +S + +Y+V +  IRK+ SGRQA A++WKK
Sbjct:  266 EVELGGDDEDEEGGVQYITVGIDDVVRVMPWFCIEASLVGDMVECQLEGTMMWLRGTVVNVHLEQAVYDVALEPECEDGQDDGLATFGENAVAGGGEDCDKKQGEASPNTMYRVPESSIRKVVSGRQAAAKRWKK 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63710.13942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSD6_ECTSI1.250e-2345.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS13_9PHAE1.030e-2142.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63710contigH-elongata_contig63710:96..3326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001020.1
Exons3
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63710.13942.1prot_H-elongata_contig63710.13942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63710 96..3326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931020.2426713-CDS-H-elongata_contig63710:95..2691622931020.2426713-CDS-H-elongata_contig63710:95..269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63710 96..269 -
1691679665.1088982-CDS-H-elongata_contig63710:95..2691691679665.1088982-CDS-H-elongata_contig63710:95..269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63710 96..269 -
1622931020.265278-CDS-H-elongata_contig63710:1673..17901622931020.265278-CDS-H-elongata_contig63710:1673..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63710 1674..1790 -
1691679665.1217203-CDS-H-elongata_contig63710:1673..17901691679665.1217203-CDS-H-elongata_contig63710:1673..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63710 1674..1790 -
1622931020.2931201-CDS-H-elongata_contig63710:3227..33261622931020.2931201-CDS-H-elongata_contig63710:3227..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63710 3228..3326 -
1691679665.1381474-CDS-H-elongata_contig63710:3227..33261691679665.1381474-CDS-H-elongata_contig63710:3227..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63710 3228..3326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63710.13942.1

>prot_H-elongata_contig63710.13942.1 ID=prot_H-elongata_contig63710.13942.1|Name=mRNA_H-elongata_contig63710.13942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
QVELEGSDQSENIDCVTVGIDDLVRVMPWFCIEVGDIVEIQVEALAGWIR
GTVIRIDPAAMTYDVEVDLGTTDGICDTPESNEEKCRKIRCNDGGKEKRS
SSTSVVYQVTDDRIRKICSGRQAIARQWKK
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mRNA from alignment at H-elongata_contig63710:96..3326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63710.13942.1 ID=mRNA_H-elongata_contig63710.13942.1|Name=mRNA_H-elongata_contig63710.13942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3231bp|location=Sequence derived from alignment at H-elongata_contig63710:96..3326- (Himanthalia elongata Himel1 dioecious)
CAGGTGGAGCTCGAAGGTAGTGATCAAAGTGAAAACATCGACTGCGTCAC
GGTCGGCATCGACGACCTCGTGCGCGTCATGCCGTGGTTTTGCATAGAGG
TGGGGGATTCTGGTTCGGTTGCGCGGGGTAGACAAAACGGTGCTATGCAC
AAGCGTTACACAGGCACGCGTGTGTCATCACCCGTGCGCCCAGCCAAAAA
CCTTTTCCATAATTCCTTCCTAGTCAACTTGAGCGTTTAAGGGAACAGCT
AGATATCCGCGTTCGTAAGCACGAGTAGTGCAAGTTTTACTTCTATTTAG
CAATTGTATCGAACCGTAGAAAATTGTGCACCTTATATGAAAGATTGTTA
TAAAAAACATATGAACTCATTAAGACCCTTCGAACATCCACGCCTTCTTA
TCACCATGAGAGGTGTAGTTCAGGGGACCAACTATCATCAGGTCCGAATG
TGGACGTTACTATATTTAAGGACAAAATCGTCATAATATGTGATATTCGT
CTTCCCTGGTTGTAAATTCATCAGGTCAACGGTTAATAATATCGGCGATC
CCGTCACTGTCCTGTACACTTACATTACTCATCATATGGGGACGCCAAAC
CAAAGCCTAGAGAGAGAATTGTGGTTAGGAAGGGTTAAGCATGTTCAACA
CATGGTTGCATTATATATATAATATCTTGATTGTTTTCAAACCCTTTCTG
GAAGCATATTATGGCCTAAACTAGAGGGGAAGCAGCATCGTTAGATTATT
TTTAACTGAAGGGACGAAATAAAAATAGTTAAGAGGTTCATAGACCACAA
TCAACCAGCATGTTACCCGAATTTCAACGGGTGAGGTACACATTTCATCT
TTTGGGAGCCCAACACTATATATCCAAGAGCATTCCGTGGTGTAAATAAG
CACTGGATGAAAGGCTAAGCAAGGTAAGGTCGCCAGTACAAGGTTCAGAG
AACACTGTTATAAAAATAACACCCCTTTTAATTGCAGCTAATGAGCGAGA
GAGTACCGTGAGCGGGGTGCCCAGCTACAATCGGGGCATGACTTTCAGGT
ATATATGGTAATGATGGGCTAACCTCAAGGTTGGGATTTAGTATAATATG
GGTACATTAGTACAGACTTCTTACTGATCAGGCGACACGAGAAGAGCGAG
GCAGAGTATCAGCACGCAAGAGGGATAATATAAGGCAGACATCAGAAGAC
AAGAGGAGTAGATGAAGTCTTCAACTACGAGGTCACCGAAGAATTGCCAA
ACAAACTCGAACAAACTTGGCACCACACACGCACCTGTTAACTCGTCGAA
GAAGGACAGCAACCGATCAGTGTGCATGGTGAAAAAAGGAGCTGGCGAGG
ATGCCAAGTTCACCGGTCATTTGAAGTATAACCCTTTCGCTCCAAACCAT
ACAGCTAAAACCTGGCCAGGGCTTGGGTCTTAGAATATTGAGCTCGAGGG
ATAATACACCAAATGATCTTGAACGCTCGCATCTTACTATTTCATTGGTT
TGCCCCATTTCCCGCACATCGAGAAAACTGTACCAGGTCGGGGACATCGT
CGAGATTCAGGTGGAAGCATTAGCGGGATGGATCCGTGGTACAGTGATAC
GCATTGACCCCGCCGCGATGACTTATGATGTCGAAGTCGATCTTGGCACG
ACGGTGAGTAGCATCGCAAAACAATCAATTTTCGCCCAAAAGTAGGTTTA
CCAGGGCCTAGGAAAAGCAGTAGAAAGCCAATAATGAGCTCAAGGATCAA
ACGGGTTGCTGAGTTGTCGAACTTGACCTATGCAAGTGAGGACTTGCGAA
GACGTCCCGTAGTTTTTGGGGGGGGTTGCACAAAAGAGTGGTGCCGCGAC
AGTCACCTCCCACAGCCAGCTATTTTTAATACGAGTGTTCTGCGGCGTAT
CGAAATGAAATTAGGTTTAATGATACTGAAAATGCGGTAAAGGTTTGAAG
TTCACATTAGCTATTCGCCACGTTAACCGAATCGAACCGCACCGAAGTTC
GAAGCTCAAGCACGAAAGAGAAGCCCAGACCTGGTTACCAAACCATCTCT
TAAAGGAAGAGTATTTTTGGAGGGCTACAGTGGTATTACTCAGGAATACT
TCGCATTGTTTTTTAGTTTCGCCATCGTACGTTCTTAAGTGGGGATATCG
CTTGCCGACCTTTCTATTTATGTATGTGTGTGTGTATGTTTTATTATATT
GCACATAACCGCGCAATTCGACCCTGTCATGCTAGTCATTCTAGGCTATA
CGCATTGATCCTCCCAGTGGGGGATCAATAAATTTTGCTGCAAAAACCTC
TCATCAGACGTGACAAAGGAGATATACTCTCGCTACATTTATTTGTGTGT
ATGTATGTGTATCTTGTGTGTGGTCATGACATAGAGCAGAATATAAATCA
ACTGTACATGGTTGCGAATCCTGCTCGTGGTCAGTTGAACAGGGATGATA
ATGAACAGAGAATTGTAGCGGTAGTCCGGCGCGGTTGCGTAAACAACGCG
AGTATAATAGGCCAGTTCAAATTCTCCAGGGATAGCTCTTAATATGGGGG
AGCATTCGCAAACCTGCGTGGCGACTCCTTACGTGTCATGCCGGTTTGCG
CGGTTTCATGCAAGTTGATAAAAAGGGAAAATACTTTCTCTTTTTATCAG
TTTGCACTGGGCCACGCTAACTGGCATTATTACACATAAAGGGGCCCCAG
GCCGGTTTGACAATACACTCCCCCCCATTATGGGGAGCTATCCCTGAAGA
CTGTGACTGTCCCCGTTCGTGCCTGAGAGTTTGGTGCCGAGTGAACATCA
AATTAAATTTTGCCGCCAAGATATAGATTTTGGTTCGAAGATAACAAAAA
AGAGAGCCAAATTAGTTGAGTGGCAGCAGCCATAGAAGGGGTTATTATGC
AATTTCGTGTTCCATGCCTCTGATGCCGCACTATATACCGTCTGGAAGAT
AACCACCGCCGCCGCAATGACGTGCACTCTCTGCTCACGGATTTATTGAA
ACTATTTCCTTCTTTTCCGATCATCAACTTGAAACTGAAACGATACGGCA
CAAACAGGATGGAATCTGCGACACCCCGGAAAGTAATGAAGAGAAATGTA
GGAAAATAAGGTGTAACGACGGCGGAAAAGAAAAGCGTTCGAGTAGTACC
AGCGTGGTGTACCAAGTCACTGACGACAGGATCAGAAAGATTTGCAGCGG
CCGGCAGGCAATTGCGAGACAATGGAAAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig63710:96..3326-

>mRNA_H-elongata_contig63710.13942.1 ID=mRNA_H-elongata_contig63710.13942.1|Name=mRNA_H-elongata_contig63710.13942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig63710:96..3326- (Himanthalia elongata Himel1 dioecious)
CAGGTGGAGCTCGAAGGTAGTGATCAAAGTGAAAACATCGACTGCGTCAC
GGTCGGCATCGACGACCTCGTGCGCGTCATGCCGTGGTTTTGCATAGAGC
AGGTGGAGCTCGAAGGTAGTGATCAAAGTGAAAACATCGACTGCGTCACG
GTCGGCATCGACGACCTCGTGCGCGTCATGCCGTGGTTTTGCATAGAGGT
CGGGGACATCGTCGAGATTCAGGTGGAAGCATTAGCGGGATGGATCCGTG
GTACAGTGATACGCATTGACCCCGCCGCGATGACTTATGATGTCGAAGTC
GATCTTGGCACGACGGTCGGGGACATCGTCGAGATTCAGGTGGAAGCATT
AGCGGGATGGATCCGTGGTACAGTGATACGCATTGACCCCGCCGCGATGA
CTTATGATGTCGAAGTCGATCTTGGCACGACGGATGGAATCTGCGACACC
CCGGAAAGTAATGAAGAGAAATGTAGGAAAATAAGGTGTAACGACGGCGG
AAAAGAAAAGCGTTCGAGTAGTACCAGCGTGGTGTACCAAGTCACTGACG
ACAGGATCAGAAAGATTTGCAGCGGCCGGCAGGCAATTGCGAGACAATGG
AAAAAAGATGGAATCTGCGACACCCCGGAAAGTAATGAAGAGAAATGTAG
GAAAATAAGGTGTAACGACGGCGGAAAAGAAAAGCGTTCGAGTAGTACCA
GCGTGGTGTACCAAGTCACTGACGACAGGATCAGAAAGATTTGCAGCGGC
CGGCAGGCAATTGCGAGACAATGGAAAAAA
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