mRNA_H-elongata_contig63633.13938.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63633.13938.1
Unique NamemRNA_H-elongata_contig63633.13938.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: A0A7S2XRC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRC2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.460e-26
Identity = 65/149 (43.62%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   22 FRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDEL---MGEGDPPSPSPDLFDAAFHDSRFLFPSMHLCPLTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            + L  RD+PV VADI+N  YR  VVT+GCCGA EF+KL +YTL  +  V+HLD+DTLVL P+D+L   M    P S S       F  ++ +     L     +DA   +T D  M+ K    + VQGGFL++RP L VYE+ + I+R+
Sbjct:  134 YELLVRDLPVPVADIQNAEYREKVVTNGCCGASEFVKLHAYTLVQHDIVVHLDLDTLVLKPLDDLFDAMLHHSPSSSSSSSLTTEFAVTKDIEFGKPLPANHRIDA--FFTRDYNMASKRMKHVGVQGGFLVLRPSLSVYEEFQTIIRE 280          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: W7U427_9STRA (Glycosyl transferase, family 8 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U427_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.840e-26
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   22 FRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELMGEGDPPSPSPDLFDAAFHDSRFLFPSMHLCPLTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVR 456
            +++ ERDIPV + DI+  F R H+  SGCCGA E LKL ++TLTDYHRV+HLD+D+++L PMDEL             FD                     D + +YT D  M+ +      VQGGFLL+RP++  +E+L D V+
Sbjct:   29 WKVIERDIPVDITDIQGTFLREHIAKSGCCGATELLKLYAWTLTDYHRVVHLDMDSMLLQPMDEL-------------FDKE-------------------DKTFMYTCDYGMTNERLKACMVQGGFLLLRPNVTEFERLVDTVK 141          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: D7FZ22_ECTSI (Putative zinc-protease albF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ22_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.480e-25
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 1
Query:   22 FRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELM 219
            +R+ E+D+PVAV DIEN+ YR HVV SGCCGA+EF+KL +YTLT YHRV+H+D DTL+LHPMDELM
Sbjct:  135 WRVVEKDLPVAVEDIENETYRKHVVKSGCCGANEFIKLHAYTLTQYHRVMHVDADTLMLHPMDELM 200          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: B7G706_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G706_PHATC)

HSP 1 Score: 110 bits (274), Expect = 2.040e-25
Identity = 65/150 (43.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   16 LYFRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELMG--EGDPPSPSPDLFDAAFHDSRFLFPSMHLCPLTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            L + L  RD PVAV +I  DF R  +  +GCCG  E LKL++YTLT +  V+ LD+D L+L P+D L        P P  DL           +P   L      D  LLYT D AM   G+ V P QGG L++RPD  VYE+LR+IVR+
Sbjct:  158 LNYTLLRRDTPVAVHEIRGDFLREKITANGCCGEKELLKLEAYTLTSHEIVVLLDLDVLLLQPLDRLFDFLTYGTPLPRDDL----------QWPDRPLATTAYRDIGLLYTVDYAMVNPGRAVKPFQGGVLVLRPDRNVYEELRNIVRE 297          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: A0A7S2SCU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCU9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.170e-24
Identity = 55/156 (35.26%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   16 LYFRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELMGEGDPPSPSPDLFDAAFHDS--RFLFPSMHLCP------LTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            L +++   DIP++V +IE +F R H+ T+GCCG  E +KLQ+YTLT +  V+HLD+DT+VL P+D             DLFD    ++  + + P+ H+ P      +  VD   ++T D  M+   +  + VQGGF ++RP L + E+++ ++R+
Sbjct:    1 LNYKVHVVDIPISVDEIEGEFLRTHIATNGCCGEKELIKLQAYTLTQHSIVVHLDLDTIVLKPLD-------------DLFDTMLQNTIAKKVIPAHHIMPKYLERNINSVD--FIFTRDYNMAQNLKKSVGVQGGFFVLRPSLPILEEMKVLLRK 141          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: D8LCJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.060e-23
Identity = 58/148 (39.19%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   16 LYFRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELMGEGDPPSPSPDLFDAAFHDSRFLFPSMHLCPLTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            L FR+    +P+++ +IE+   R  +   GCCG  E +KL +YTLT+YHRV+HLD DT+VL P+D L+                                 D + SLLYT D  M      VMPVQGGFL+VRPD EV++ L  IV++
Sbjct:  118 LGFRVMRPGLPLSLDEIEDPVTRGRIAKGGCCGLAELMKLFAYTLTEYHRVVHLDTDTIVLQPLDALL---------------------------------DAEESLLYTADINMGSSYTPVMPVQGGFLVVRPDPEVFQDLVQIVKR 232          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: A0A7S4MEJ2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MEJ2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.480e-23
Identity = 60/144 (41.67%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   37 RDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELMGEGDPPSPSPDLFDAAFHDSRFLFPSMHLCPL---TDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            RD+PV V DI  D+ R  VV +GCCG  EF+KL++YTL D+  V+HLD+DTL L PMDEL            L      D     P+    PL   T +DA   +T D  M   G+  + VQGGFL++RP +  YE+ + I+R+
Sbjct:   76 RDVPVRVEDIRGDYLRTKVVDNGCCGEKEFVKLEAYTLVDHPIVVHLDLDTLALRPMDELFDAM--------LLSPGSSDFAAAVPTHADAPLPKGTPIDA--YFTRDYNMVRPGRKHVGVQGGFLVLRPSMSAYEEFKSIIRE 209          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: A0A7S3NFL9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFL9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.360e-23
Identity = 55/147 (37.41%), Postives = 85/147 (57.82%), Query Frame = 1
Query:   22 FRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDELMGEGDPPSPSPDLFDAAFHDSRFLFPSMHLCPLTDVDASLLYTTDPAMSLKGQ-TVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            +R+ ERD+P+ +ADI+ ++ RN +  +GCCGA E LKL ++TLT+YHRV+H+D+D L+L P+DEL                 + D +   P +            +YT D  M+     T  P QGGF++ +PD+EV+  L D+VR+
Sbjct:  130 YRVLERDLPLRIADIQGEYLRNRIEKNGCCGAWELLKLYAWTLTEYHRVVHVDMDVLILQPLDEL-----------------YDDLKIWGPQVRA----------VYTYDWTMARPPWGTNPPTQGGFIIAKPDIEVFNSLVDVVRK 249          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: A0A7S4T1G8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T1G8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.440e-23
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   16 LYFRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDEL---MGEGDPPSPSPDLFDAAF-HDSRFLFPSMHLCPLTDVDASL------LYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIV 453
            L F++  RD P+ V +I+  F R HVV SGCCG  E++KL SYTLTD+  V+HLD+D L+L P D+L   M +G P SP+ +     F HD             T V+ SL       +T D  M   G+  + VQGGFL+VRP L+V+E+ R I+
Sbjct:  161 LGFQILVRDTPINVTEIKGKFLREHVVKSGCCGEKEYIKLYSYTLTDHPIVVHLDLDCLILKPFDDLFDAMLDG-PESPARERIKLMFPHD-------------TSVEKSLPSHINAYFTRDYNMVNPGKKHVGVQGGFLVVRPSLDVFEEYRSII 302          
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Match: A0A7S2Q4C4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q4C4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.070e-23
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 1
Query:   16 LYFRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTLTDYHRVLHLDIDTLVLHPMDEL---MGEGDPPSPSPDL------FDAAFHDSRFLFPSMHLCPLTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDIVRQ 459
            L +++  RD+PV + +IE D+ RN V  +GCCG  EF+KL +YTL ++  V+HLD+DTLVL PMD L   M +G  P  +          D AF+D     P     P+     +  +T D  M+  G     VQGGFL++RP +EVYE+ R+I+R+
Sbjct:  156 LGYQILVRDVPVPLQEIEGDYLRNKVPKNGCCGDKEFVKLHAYTLMEHPVVVHLDLDTLVLKPMDALYDVMMDGVTPHTTTKKNKNNGGIDVAFND-----PMQQQQPI-----NAFFTRDYNMAHPGMKHAGVQGGFLVLRPSMEVYEEFREIIRK 302          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63633.13938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XRC2_9STRA2.460e-2643.62Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
W7U427_9STRA6.840e-2640.69Glycosyl transferase, family 8 (Fragment) n=3 Tax=... [more]
D7FZ22_ECTSI1.480e-2571.21Putative zinc-protease albF n=1 Tax=Ectocarpus sil... [more]
B7G706_PHATC2.040e-2543.33Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2SCU9_9STRA2.170e-2435.26Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
D8LCJ8_ECTSI1.060e-2339.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4MEJ2_9STRA1.480e-2341.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3NFL9_9STRA2.360e-2337.41Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4T1G8_9STRA3.440e-2342.31Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2Q4C4_9STRA4.070e-2340.13Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63633contigH-elongata_contig63633:354..1592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue6.2e-23
Seed eggNOG ortholog2850.Phatr38849
EggNOG OGs2B6VE@1,2S0N3@2759,2XEQ5@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size459
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63633.13938.1prot_H-elongata_contig63633.13938.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63633 354..1592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.6423995-CDS-H-elongata_contig63633:353..5871622931019.6423995-CDS-H-elongata_contig63633:353..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63633 354..587 -
1691679664.8579164-CDS-H-elongata_contig63633:353..5871691679664.8579164-CDS-H-elongata_contig63633:353..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63633 354..587 -
1622931019.6575217-CDS-H-elongata_contig63633:900..10211622931019.6575217-CDS-H-elongata_contig63633:900..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63633 901..1021 -
1691679664.8715296-CDS-H-elongata_contig63633:900..10211691679664.8715296-CDS-H-elongata_contig63633:900..1021Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63633 901..1021 -
1622931019.6809497-CDS-H-elongata_contig63633:1488..15921622931019.6809497-CDS-H-elongata_contig63633:1488..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63633 1489..1592 -
1691679664.8821163-CDS-H-elongata_contig63633:1488..15921691679664.8821163-CDS-H-elongata_contig63633:1488..1592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63633 1489..1592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63633.13938.1

>prot_H-elongata_contig63633.13938.1 ID=prot_H-elongata_contig63633.13938.1|Name=mRNA_H-elongata_contig63633.13938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MRAWLLYFRLSERDIPVAVADIENDFYRNHVVTSGCCGADEFLKLQSYTL
TDYHRVLHLDIDTLVLHPMDELMGEGDPPSPSPDLFDAAFHDSRFLFPSM
HLCPLTDVDASLLYTTDPAMSLKGQTVMPVQGGFLLVRPDLEVYEKLRDI
VRQ
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mRNA from alignment at H-elongata_contig63633:354..1592-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63633.13938.1 ID=mRNA_H-elongata_contig63633.13938.1|Name=mRNA_H-elongata_contig63633.13938.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1239bp|location=Sequence derived from alignment at H-elongata_contig63633:354..1592- (Himanthalia elongata Himel1 dioecious)
ATGCGTGCGTGGCTGCTATATTTCAGGCTGTCGGAGAGAGATATACCAGT TGCCGTGGCTGATATCGAAAACGACTTCTACCGGAACCATGTCGTAACAA GCGGGTGAGCCTCTTGTCCACGTGTCATCTTATTTCTTTATCTTGAGGTT ACTGTGTCCTCCATTTGGTTCTTATTGCGATGATTTTTAATGTTTTGTTG GATATATTTTTAAATGTCGTGAAAACACGCTTAGTTTAGTGCTATTTCCC CGTGTATCGCTGGCATGATTTCATTTCGGGTGGTTTCAGTTTAATATTTT TGCGACGATGACTAAATGTTCGTCTGCTTTTCCCTCCCTCTGTGATCCAT CTCAACACTCGCCTGCTCGATCACCACCCTCCCACAACATCACGGTTGGC ATGACCCTTGAATCTATCGGTGAACCCTTCTTCCTGAAACTCCCCTCGTC CAGTGTACCCGGTTTTATCTAGACACGCGGTGGAGCTACTCGCACTGATT TACGGAGGCGTGTTTGGTCGGCTTCATTTTACGAGGGTTTGTCTGTTTTT CGCCGCGTGTTGTTTTATTAGGTGCTGCGGTGCTGACGAGTTCTTGAAGC TGCAGTCTTACACCCTGACGGACTACCACAGAGTGCTGCACCTTGACATC GATACCCTGGTGCTTCATCCCATGGATGAGCTCATGGGTGAGGTTGCCGC ACGTCCATCCCCCACCCCCCCTCTTCTTCCTTCCCCTGCCCCGCATGCCA TTCCGCATTCCTTGAGGTATAGTATATTACATGCCACATTTATGGTATCT ATCAAAGCATCTAACTCTTATGAAGCTCGGCGTCCCAGCTTGGCCAGAAT AATCGAGGTCTTACGCGAGCGCAGAATCCCGAAACCTTTTACCAAACACC CCCTTCCGAGTGGTCTTGGATTGAGGATTGCTAAACACGCCACCGACGTG CCAATGTGGGAACGATGGTTAAACGAAAACTAAACGAATCGAGACAGTGC CACAGGGCGACCCCCCATCCCCGTCCCCGGATCTATTTGATGCGGCGTTT CACGACAGCCGTTTTCTCTTTCCCTCCATGCATTTATGCCCCCTTACAGA TGTAGACGCGAGCTTGCTTTACACCACCGACCCAGCCATGTCCCTTAAAG GCCAGACGGTCATGCCGGTTCAGGGAGGTTTCCTGCTCGTGCGCCCTGAC CTCGAGGTGTACGAGAAGCTCCGAGACATTGTGCGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig63633:354..1592-

>mRNA_H-elongata_contig63633.13938.1 ID=mRNA_H-elongata_contig63633.13938.1|Name=mRNA_H-elongata_contig63633.13938.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig63633:354..1592- (Himanthalia elongata Himel1 dioecious)
ATGCGTGCGTGGCTGCTATATTTCAGGCTGTCGGAGAGAGATATACCAGT
TGCCGTGGCTGATATCGAAAACGACTTCTACCGGAACCATGTCGTAACAA
GCGGATGCGTGCGTGGCTGCTATATTTCAGGCTGTCGGAGAGAGATATAC
CAGTTGCCGTGGCTGATATCGAAAACGACTTCTACCGGAACCATGTCGTA
ACAAGCGGGTGCTGCGGTGCTGACGAGTTCTTGAAGCTGCAGTCTTACAC
CCTGACGGACTACCACAGAGTGCTGCACCTTGACATCGATACCCTGGTGC
TTCATCCCATGGATGAGCTCATGGGTGAGGTGCTGCGGTGCTGACGAGTT
CTTGAAGCTGCAGTCTTACACCCTGACGGACTACCACAGAGTGCTGCACC
TTGACATCGATACCCTGGTGCTTCATCCCATGGATGAGCTCATGGGTGAG
GGCGACCCCCCATCCCCGTCCCCGGATCTATTTGATGCGGCGTTTCACGA
CAGCCGTTTTCTCTTTCCCTCCATGCATTTATGCCCCCTTACAGATGTAG
ACGCGAGCTTGCTTTACACCACCGACCCAGCCATGTCCCTTAAAGGCCAG
ACGGTCATGCCGGTTCAGGGAGGTTTCCTGCTCGTGCGCCCTGACCTCGA
GGTGTACGAGAAGCTCCGAGACATTGTGCGGCAGGGCGACCCCCCATCCC
CGTCCCCGGATCTATTTGATGCGGCGTTTCACGACAGCCGTTTTCTCTTT
CCCTCCATGCATTTATGCCCCCTTACAGATGTAGACGCGAGCTTGCTTTA
CACCACCGACCCAGCCATGTCCCTTAAAGGCCAGACGGTCATGCCGGTTC
AGGGAGGTTTCCTGCTCGTGCGCCCTGACCTCGAGGTGTACGAGAAGCTC
CGAGACATTGTGCGGCAG
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