mRNA_H-elongata_contig63625.13937.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63625.13937.1
Unique NamemRNA_H-elongata_contig63625.13937.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63625.13937.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 5.290e-42
Identity = 78/136 (57.35%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:    1 GGGGEMRRLDALDYFRRIRELGTYPPSQLCSLLVQLLASEDLLEEADETFADVLSRGVLPTEACATMMIRLRVQRGKIEEAMEILAMMEGRAYRERYRRPRFRSYQPVIRELFRRGNMDGVMKLWKHMAWHNILPK 408
            G G E+  L+AL++F+RIR LG YPP  LCSLLVQLLA+E +LEEA+E FAD+L  G+L                      ME+LAMMEGR Y++++ RPRFRSYQPVI EL RRG MDGVM+LWKHM WH+I PK
Sbjct:  277 GEGDELYGLEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPK 412
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BLAST of mRNA_H-elongata_contig63625.13937.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.100e-24
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:  220 QRGKIEEAMEILAMMEGRAYRERYRRPRFRSYQPVIRELFRRGNMDGVMKLWKHMAWHNILPK 408
            QRGK+ EAME+LAMMEGR Y++++ RPRFRSYQPVI EL RRG MDGVM+LW+HM WH+I PK
Sbjct:   10 QRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPK 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63625.13937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA1_ECTSI5.290e-4257.35PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE3.100e-2473.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63625contigH-elongata_contig63625:1432..2691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue7.9e-35
Seed eggNOG ortholog2880.D7FNA1
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZc3h12a-like Ribonuclease NYN domain protein
Ec32 orthologEc-15_003520.1
Exons2
Model size408
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63625.13937.1prot_H-elongata_contig63625.13937.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63625 1447..2691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.5772507-UTR-H-elongata_contig63625:1431..14461622931019.5772507-UTR-H-elongata_contig63625:1431..1446Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63625 1432..1446 +
1691679664.81576-UTR-H-elongata_contig63625:1431..14461691679664.81576-UTR-H-elongata_contig63625:1431..1446Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63625 1432..1446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.5913324-CDS-H-elongata_contig63625:1446..16531622931019.5913324-CDS-H-elongata_contig63625:1446..1653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63625 1447..1653 +
1691679664.8308804-CDS-H-elongata_contig63625:1446..16531691679664.8308804-CDS-H-elongata_contig63625:1446..1653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63625 1447..1653 +
1622931019.602617-CDS-H-elongata_contig63625:2505..26911622931019.602617-CDS-H-elongata_contig63625:2505..2691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63625 2506..2691 +
1691679664.8471193-CDS-H-elongata_contig63625:2505..26911691679664.8471193-CDS-H-elongata_contig63625:2505..2691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63625 2506..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63625.13937.1

>prot_H-elongata_contig63625.13937.1 ID=prot_H-elongata_contig63625.13937.1|Name=mRNA_H-elongata_contig63625.13937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MRRLDALDYFRRIRELGTYPPSQLCSLLVQLLASEDLLEEADETFADVLS
RGVLPTEACATMMIRLRVQRGKIEEAMEILAMMEGRAYRERYRRPRFRSY
QPVIRELFRRGNMDGVMKLWKHMAWHNILPK
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mRNA from alignment at H-elongata_contig63625:1432..2691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63625.13937.1 ID=mRNA_H-elongata_contig63625.13937.1|Name=mRNA_H-elongata_contig63625.13937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1260bp|location=Sequence derived from alignment at H-elongata_contig63625:1432..2691+ (Himanthalia elongata Himel1 dioecious)
GGCGGGGGGGGGGAGATGCGCAGGTTGGACGCGCTGGACTACTTCAGGCG
CATACGGGAGCTGGGCACTTATCCACCGTCGCAGCTGTGCAGCCTCTTGG
TGCAGCTACTGGCCTCGGAGGATCTCTTGGAGGAGGCGGACGAGACGTTC
GCGGACGTGCTGAGCAGGGGGGTGTTGCCCACGGAGGCGTGCGCCACCAT
GATGATAAGGCTTCGAGTACAGGTGGGACAGCTCTTGCCACATGTGTCTG
TTGCCATGTGTCTGTCTGTATGGGCTGTCTCTCTCTGTCTCTGACTCTAT
CTTTACTATATTAAATTTAGTATGTAAAAATAAACAGATCGAGTTCCATA
GGGGTTAATATGAAAATATATAGAGATTTTTTATTGTGTGCATACCCTGT
ATATTTGGCCTGTGTCTTTCTGAGAGCTATCCGGCAGTCTGTATGAGGCA
ATGAGGCAATGCTTTCTGAGAGCTGGCAGCTGAAAGGATCGCGTTGTGAA
TGTAAAGACTATGACCCGCGATGTGCATATAATCTTATAATGCCGAGTGT
ACAAATTCATGCTACGCGGCATATTTGGTACCCGCACTACCACTATCTAG
GTAGAAAATTCTGAACATCTTCCACAAAGTCTTGAATCGTCCGCTTGGGC
ATTTGCGTCCCGTCCCGTCCCCCCCCCCTAAGAAACTCTTTAAGTACTCC
GAGTGCTCAATCATAGCCAACGGCATAATATCAAGTTCGACGTCGCAAAC
ATAGCCTGGACGGCGAAAGCCCGGTATCATACTAATACTAATACTAATAC
CGCTCCATCCTGGCATTGCTTATACTATTATATTACTAATACTAATATCT
CCTAGGATACGAAATATATTTAACATACTGGAAGTACCTCCCTCTCTCTC
TCCCCTCTCGAAACGTTAAATGTAGGAGTTAGGGTTAGGGTTAGCAGAGT
ACACCACCCGTCAGAAAAGTGCCACACACTGATGCAGTGTAAAGACAACT
CTCACTCAAATTTACCTGCGCCTGTGATTGTTTTTTTCTTTCTTTCTTTT
TCCGTGGGGGGTTTCCAACACAAGAGGGGGAAAATCGAGGAGGCCATGGA
AATCCTTGCGATGATGGAGGGCCGCGCGTATCGAGAGAGGTATCGCCGGC
CGCGCTTCCGCTCGTACCAACCGGTTATCCGCGAGCTGTTTCGTAGGGGG
AACATGGACGGGGTGATGAAGCTCTGGAAGCACATGGCTTGGCACAATAT
CCTTCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig63625:1432..2691+

>mRNA_H-elongata_contig63625.13937.1 ID=mRNA_H-elongata_contig63625.13937.1|Name=mRNA_H-elongata_contig63625.13937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig63625:1432..2691+ (Himanthalia elongata Himel1 dioecious)
ATGCGCAGGTTGGACGCGCTGGACTACTTCAGGCGCATACGGGAGCTGGG
CACTTATCCACCGTCGCAGCTGTGCAGCCTCTTGGTGCAGCTACTGGCCT
CGGAGGATCTCTTGGAGGAGGCGGACGAGACGTTCGCGGACGTGCTGAGC
AGGGGGGTGTTGCCCACGGAGGCGTGCGCCACCATGATGATAAGGCTTCG
AGTACAGATGCGCAGGTTGGACGCGCTGGACTACTTCAGGCGCATACGGG
AGCTGGGCACTTATCCACCGTCGCAGCTGTGCAGCCTCTTGGTGCAGCTA
CTGGCCTCGGAGGATCTCTTGGAGGAGGCGGACGAGACGTTCGCGGACGT
GCTGAGCAGGGGGGTGTTGCCCACGGAGGCGTGCGCCACCATGATGATAA
GGCTTCGAGTACAGAGGGGGAAAATCGAGGAGGCCATGGAAATCCTTGCG
ATGATGGAGGGCCGCGCGTATCGAGAGAGGTATCGCCGGCCGCGCTTCCG
CTCGTACCAACCGGTTATCCGCGAGCTGTTTCGTAGGGGGAACATGGACG
GGGTGATGAAGCTCTGGAAGCACATGGCTTGGCACAATATCCTTCCCAAG
AGGGGGAAAATCGAGGAGGCCATGGAAATCCTTGCGATGATGGAGGGCCG
CGCGTATCGAGAGAGGTATCGCCGGCCGCGCTTCCGCTCGTACCAACCGG
TTATCCGCGAGCTGTTTCGTAGGGGGAACATGGACGGGGTGATGAAGCTC
TGGAAGCACATGGCTTGGCACAATATCCTTCCCAAG
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