mRNA_H-elongata_contig63616.13936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63616.13936.1
Unique NamemRNA_H-elongata_contig63616.13936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63616.13936.1 vs. uniprot
Match: D7FNV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 8.320e-42
Identity = 185/413 (44.79%), Postives = 217/413 (52.54%), Query Frame = 1 
Query:    7 KEPTAMVSSWTPSLEPRYVENHHAAPSAASEATAKT---LPRGGEERREKEA-------QQATRGSDFSNLYMPTPERATSSGQLYPALVPTAPFSEAVTTNVNQRGMEQRTEERAQGSTQARLNATIPRSASTLDARTAASGIATAAAGLSAMVM-----------------------AGERRDGVAVRAAAGNTSAEVVEELLSENERLRFIIQDMSDELEKVSLQLQGKGETARGSDVSVAPTRTAGGAAASSQPRQQSAAPRPLSAMS------QLLG-YPGAEAEASRXXXXXXXXXXXXXXXXXXXXXTLR----------RGTFVHFKCENCPQWLRVPGHAQLVFCPTCSHTSQMSSNSTIXXXXXXXXXXXXXXXXXXXXXTRNNAAGEAEASWLGYLKSIIAS 1095
            +EP A VS+W P  E RYVE H A P+A+  A A+    LP+  +E +E+E         QATR SDFS+LY   P R  S+GQLYP L P+APFS+ +   +                      A          A +AA G A    G +A                          A ER   V       ++S EVVEELLSENERLR IIQ+MSDELE+ S+   G G TA               AA ++Q RQ SAA     A +      +LLG YPGA+AEA+R  XXXXXXXXX            +           GTFVHFKCENCPQWL+VP HAQLV+CPTC HTSQM+S STI XXXXXXXXXXXXXXXXXXXX      GE E  WLGY KSIIAS
Sbjct:   72 EEPVATVSTWMPMAEHRYVETHVAPPTASDVAAARARGELPQLLQEGQEQEGGQLQEQQAQATRVSDFSSLYSAAPHREESTGQLYPVLAPSAPFSDTMRIPMPPP-------------------AVXXXXXXXXRAPSAAFGAAVRDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXARERSQDV-------SSSGEVVEELLSENERLRAIIQEMSDELERGSVPAIG-GSTA---------------AAGATQGRQSSAARAXXXAATSATPTERLLGRYPGAQAEAARRRXXXXXXXXXGHRQDGGARPQTQVQPQVQAAVGAGTFVHFKCENCPQWLKVPVHAQLVYCPTCGHTSQMTSASTIHXXXXXXXXXXXXXXXXXXXXXXXX--GEEEVGWLGYFKSIIAS 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63616.13936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNV0_ECTSI8.320e-4244.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63616contigH-elongata_contig63616:280..3480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003270.1
Exons5
Model size1703
Cds size1077
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.4478018-UTR-H-elongata_contig63616:279..3001622931019.4478018-UTR-H-elongata_contig63616:279..300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63616 280..300 +
1691679664.745713-UTR-H-elongata_contig63616:279..3001691679664.745713-UTR-H-elongata_contig63616:279..300Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63616 280..300 +
1622931019.5454755-UTR-H-elongata_contig63616:2875..34801622931019.5454755-UTR-H-elongata_contig63616:2875..3480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63616 2876..3480 +
1691679664.8003044-UTR-H-elongata_contig63616:2875..34801691679664.8003044-UTR-H-elongata_contig63616:2875..3480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63616 2876..3480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.4680333-CDS-H-elongata_contig63616:300..4921622931019.4680333-CDS-H-elongata_contig63616:300..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 301..492 +
1691679664.7552478-CDS-H-elongata_contig63616:300..4921691679664.7552478-CDS-H-elongata_contig63616:300..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 301..492 +
1622931019.4820313-CDS-H-elongata_contig63616:844..12011622931019.4820313-CDS-H-elongata_contig63616:844..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 845..1201 +
1691679664.7639637-CDS-H-elongata_contig63616:844..12011691679664.7639637-CDS-H-elongata_contig63616:844..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 845..1201 +
1622931019.5006585-CDS-H-elongata_contig63616:1470..16641622931019.5006585-CDS-H-elongata_contig63616:1470..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 1471..1664 +
1691679664.7719936-CDS-H-elongata_contig63616:1470..16641691679664.7719936-CDS-H-elongata_contig63616:1470..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 1471..1664 +
1622931019.5201511-CDS-H-elongata_contig63616:2218..23831622931019.5201511-CDS-H-elongata_contig63616:2218..2383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 2219..2383 +
1691679664.780263-CDS-H-elongata_contig63616:2218..23831691679664.780263-CDS-H-elongata_contig63616:2218..2383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 2219..2383 +
1622931019.533922-CDS-H-elongata_contig63616:2706..28751622931019.533922-CDS-H-elongata_contig63616:2706..2875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 2707..2875 +
1691679664.7888522-CDS-H-elongata_contig63616:2706..28751691679664.7888522-CDS-H-elongata_contig63616:2706..2875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63616 2707..2875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63616.13936.1prot_H-elongata_contig63616.13936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63616 301..2875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63616.13936.1

>prot_H-elongata_contig63616.13936.1 ID=prot_H-elongata_contig63616.13936.1|Name=mRNA_H-elongata_contig63616.13936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
MVSSWTPSLEPRYVENHHAAPSAASEATAKTLPRGGEERREKEAQQATRG
SDFSNLYMPTPERATSSGQLYPALVPTAPFSEAVTTNVNQRGMEQRTEER
AQGSTQARLNATIPRSASTLDARTAASGIATAAAGLSAMVMAGERRDGVA
VRAAAGNTSAEVVEELLSENERLRFIIQDMSDELEKVSLQLQGKGETARG
SDVSVAPTRTAGGAAASSQPRQQSAAPRPLSAMSQLLGYPGAEAEASRRR
QEENQQQQQQQQQQQQQQQTLRRGTFVHFKCENCPQWLRVPGHAQLVFCP
TCSHTSQMSSNSTIYYPPNNEIPSAARRSSGGSESTRNNAAGEAEASWLG
YLKSIIAS*
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mRNA from alignment at H-elongata_contig63616:280..3480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63616.13936.1 ID=mRNA_H-elongata_contig63616.13936.1|Name=mRNA_H-elongata_contig63616.13936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3201bp|location=Sequence derived from alignment at H-elongata_contig63616:280..3480+ (Himanthalia elongata Himel1 dioecious)
CAGCAAAAAGAGCCTACCGCGATGGTTTCGTCGTGGACACCCTCGTTGGA
ACCGCGTTACGTTGAAAACCATCACGCTGCGCCATCTGCGGCTTCGGAAG
CGACTGCAAAAACCCTTCCACGGGGGGGCGAGGAGCGAAGGGAGAAGGAG
GCGCAGCAAGCGACAAGAGGGTCCGACTTCAGCAATCTCTATATGCCGAC
TCCTGAACGCGCGGTGCGACCTTGCGACCGCAGTAATACTTGGGCGATAA
AGCGTGCTTGCGTCGTGATTGGAAACAAACCGTTTGTGTGTGTGTTGCGG
AGGTAGAGGGTTGGTGTCGATATCTTGAAATGTTTCCTTAGTTTATTTAG
TAAAGGAAAACGCCTCCATGAAAAATGTTCTTGAATCACGATTACAATGC
ATCTTTCGTGAGCATGCCTCCACAATACAAGACTTATAATGCTGATGTTA
ATGTAAGGCGGCTTTTCTTCCGCGAGAGATAAGCCTCTCGTCTAACCCTC
GTTGATCTCGCATCTCTTCATGTTCACGAAACTCCGCTTGTACCTCGCCG
CCCGTGGCCGTCCAGACGTCTTCTGGGCAACTATACCCCGCTTTAGTTCC
CACCGCGCCTTTCTCGGAAGCCGTGACGACAAACGTGAACCAGAGAGGAA
TGGAGCAGCGTACGGAAGAACGAGCGCAGGGCTCAACGCAGGCGCGCCTC
AACGCAACGATTCCGCGGTCCGCGTCGACACTTGACGCGAGAACGGCGGC
TTCTGGAATTGCAACGGCGGCTGCAGGATTGTCTGCCATGGTGATGGCGG
GGGAGCGGCGAGATGGGGTGGCGGTCAGAGCGGCTGCCGGAAACACCTCG
GCTGAGGTGGTCGAAGAGCTCTTGTCCGAGAATGAACGACTTCGTTTCAT
TATCCAGGACATGTCGGATGAGGTACGCCGGGGAACTACGCTAGTTTTCC
CGAAGAAATATTGATATCAGTCTGTCGCGAGAAACTTGTCAATTCACGTA
ACGCGCTTCCTTGGAAGGACCTTAAGTTGCAGCAAAGATTGAGCACTATG
TGCGGTTACAACATTGTTTCACTAGAAGGAGACATATATTCAAAAAATAA
AAGCTGAAGCTTATGACGTGCGCCAAGAGAGATGCTCGAGCCTATTCGGT
CCTCGTCGTACCGACCAACCCACGTATGACCTGTCTATCAGCTTGAGAAG
GTGTCTCTACAGCTGCAAGGGAAGGGGGAAACGGCGCGGGGGAGCGACGT
GTCGGTGGCGCCAACGAGAACTGCAGGGGGGGCGGCGGCGAGCTCGCAAC
CACGGCAACAAAGCGCCGCCCCCCGCCCTCTCTCTGCGATGTCTCAGCTG
TTGGGATATCCCGGCGCTGAGGCCGAGGCCTCCAGGCAAGGTTTAAGCTC
TCCCCGTCTTGGTCAAGGGGGGAAGGGGGCGGGGTGCTGAGGTTCCCGGG
AGTTCGAGATGATTCATTTTATGCTTGCTGTTCACCGCCTGATCGTAACA
AATCGTTGAAGTCTAGGGCGTGCCTTTGGCGCATTGCACGGACGATCAGC
TTTCTATCTTGCTGTTCAAAACCCTTATTTCACAGCATGTCGGCGTTGTA
CGCAAAACGTTGTATAATTATATTAAAACGTGACCGCCCAACAGAGAGGG
ATTGTGAAGTAAAGAGCAACCTGCCGCAAGGTAGTCCTCTGACTTCCCGT
GTGGTATCGAATGCTGTAGCCGTAAACTGTTTTTCCACGCGTGCGCTCGC
GAGGCGCAAAAAGAGCCAGAGCGCAGCGATCGGATTCCAATCGGGGTCTA
GGCCGCGCCCCGAAAATGCCATCCCGACGGTCTGTTGACGGGGTCCGGGT
GTTCTACTTGTTGTCGAGTTCCATAGGCAACTACCGTTGTGCGATGCCAC
CCCTTTTCTCTCCTATGTTGTGTCTTGTAACGGTTCAAGGCGACGACAAG
AAGAGAATCAGCAGCAGCAACAACAACAACAGCAACAGCAGCAGCAACAA
CAAACTCTCAGGCGAGGAACCTTCGTACACTTCAAGTGCGAAAACTGTCC
TCAGTGGCTCCGGGTACCAGGGCATGCGCAGCTAGTGTTCTGTCCCACCT
GCAGGTACAGTACCCTCCCCCCTCGCTCCCCTTCAACCGTTAGATTCCTG
AAGGCGTTGGTCCGTCCAAAAGGCTCAGCCCCCAGATTATGATCGCCGTT
ACCCCCAATTTTTCCCGTACTCGTACTCTCTATAGATACCCTCGCAAAAC
GATTGGTCTCTGGCAAACGGAGAAGCTTCAACGCGCGTATGTTCCATGAT
CCCCGATGTTTAAAAAGATGGCATTGCCTCCTCCGTCGGCAATCCTAGTG
CATAGCTCTGCTGACTAAGCTTCGTCGCTCTCACATCCGACACACCGTGT
GGCCGTTACGCGACTTTTGTGAAACAGTCACACTTCGCAGATGTCGTCCA
ACTCTACGATTTACTACCCTCCAAACAACGAGATACCGAGCGCGGCTCGG
AGAAGCTCTGGCGGCAGCGAGTCAACGAGGAACAATGCAGCTGGGGAGGC
CGAAGCGAGTTGGTTGGGATATTTAAAGAGTATTATTGCTTCTTGAAACC
GCTGCGCGCTCCTTTTTTTCTGCCCCCTCTTTCTCTTTTGCACGATACCA
TATACATTTATGGCACATGTATATTTGTATGTTTGCATGTGTATATTTAC
GCCGAGGTTCGACAACAGACGACGCATAGCTCTATACATCCCTAAAGTAC
TTGTACAATGAGTTGGCGGTCGTTTCCTAATGTGTTCAAGTAAATAGCGC
GCCAAGAAAACTGAGGAGCAGGGAGGTTAAAAGTAAATGGGAGAAATAAC
ATGTTTTTTTTTAGTGCTTCTCGCTTGTAAGTGACGCGCGAGAGAAACCT
GACGTGCCGATGTTGTGGCGGCAGCGACGGTGGCGATGGGTCCACAACGA
CTGTGTTGTGTAGGTTGTCATCCCATTTATTCTGGACGTCATAGTCTTCT
TGTAGACGCACCAGCCGGGGTCACGCAGAACGAAGGTCACACAACATTTC
TCCACCTCCCTTCTGCGGTGGTTGCCTTAATTTATATCTCGGCGACATAC
TGATTGATTGGCCTATGGCCCTCTAACGGCTTCTCTATGGATATCAAATC
ATATTTCTTTCTCTCTAGTATTTTTTTCTTTGTTCTTTTTTCTGCCACTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig63616:280..3480+

>mRNA_H-elongata_contig63616.13936.1 ID=mRNA_H-elongata_contig63616.13936.1|Name=mRNA_H-elongata_contig63616.13936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig63616:280..3480+ (Himanthalia elongata Himel1 dioecious)
ATGGTTTCGTCGTGGACACCCTCGTTGGAACCGCGTTACGTTGAAAACCA
TCACGCTGCGCCATCTGCGGCTTCGGAAGCGACTGCAAAAACCCTTCCAC
GGGGGGGCGAGGAGCGAAGGGAGAAGGAGGCGCAGCAAGCGACAAGAGGG
TCCGACTTCAGCAATCTCTATATGCCGACTCCTGAACGCGCGATGGTTTC
GTCGTGGACACCCTCGTTGGAACCGCGTTACGTTGAAAACCATCACGCTG
CGCCATCTGCGGCTTCGGAAGCGACTGCAAAAACCCTTCCACGGGGGGGC
GAGGAGCGAAGGGAGAAGGAGGCGCAGCAAGCGACAAGAGGGTCCGACTT
CAGCAATCTCTATATGCCGACTCCTGAACGCGCGACGTCTTCTGGGCAAC
TATACCCCGCTTTAGTTCCCACCGCGCCTTTCTCGGAAGCCGTGACGACA
AACGTGAACCAGAGAGGAATGGAGCAGCGTACGGAAGAACGAGCGCAGGG
CTCAACGCAGGCGCGCCTCAACGCAACGATTCCGCGGTCCGCGTCGACAC
TTGACGCGAGAACGGCGGCTTCTGGAATTGCAACGGCGGCTGCAGGATTG
TCTGCCATGGTGATGGCGGGGGAGCGGCGAGATGGGGTGGCGGTCAGAGC
GGCTGCCGGAAACACCTCGGCTGAGGTGGTCGAAGAGCTCTTGTCCGAGA
ATGAACGACTTCGTTTCATTATCCAGGACATGTCGGATGAGACGTCTTCT
GGGCAACTATACCCCGCTTTAGTTCCCACCGCGCCTTTCTCGGAAGCCGT
GACGACAAACGTGAACCAGAGAGGAATGGAGCAGCGTACGGAAGAACGAG
CGCAGGGCTCAACGCAGGCGCGCCTCAACGCAACGATTCCGCGGTCCGCG
TCGACACTTGACGCGAGAACGGCGGCTTCTGGAATTGCAACGGCGGCTGC
AGGATTGTCTGCCATGGTGATGGCGGGGGAGCGGCGAGATGGGGTGGCGG
TCAGAGCGGCTGCCGGAAACACCTCGGCTGAGGTGGTCGAAGAGCTCTTG
TCCGAGAATGAACGACTTCGTTTCATTATCCAGGACATGTCGGATGAGCT
TGAGAAGGTGTCTCTACAGCTGCAAGGGAAGGGGGAAACGGCGCGGGGGA
GCGACGTGTCGGTGGCGCCAACGAGAACTGCAGGGGGGGCGGCGGCGAGC
TCGCAACCACGGCAACAAAGCGCCGCCCCCCGCCCTCTCTCTGCGATGTC
TCAGCTGTTGGGATATCCCGGCGCTGAGGCCGAGGCCTCCAGCTTGAGAA
GGTGTCTCTACAGCTGCAAGGGAAGGGGGAAACGGCGCGGGGGAGCGACG
TGTCGGTGGCGCCAACGAGAACTGCAGGGGGGGCGGCGGCGAGCTCGCAA
CCACGGCAACAAAGCGCCGCCCCCCGCCCTCTCTCTGCGATGTCTCAGCT
GTTGGGATATCCCGGCGCTGAGGCCGAGGCCTCCAGGCGACGACAAGAAG
AGAATCAGCAGCAGCAACAACAACAACAGCAACAGCAGCAGCAACAACAA
ACTCTCAGGCGAGGAACCTTCGTACACTTCAAGTGCGAAAACTGTCCTCA
GTGGCTCCGGGTACCAGGGCATGCGCAGCTAGTGTTCTGTCCCACCTGCA
GGCGACGACAAGAAGAGAATCAGCAGCAGCAACAACAACAACAGCAACAG
CAGCAGCAACAACAAACTCTCAGGCGAGGAACCTTCGTACACTTCAAGTG
CGAAAACTGTCCTCAGTGGCTCCGGGTACCAGGGCATGCGCAGCTAGTGT
TCTGTCCCACCTGCAGTCACACTTCGCAGATGTCGTCCAACTCTACGATT
TACTACCCTCCAAACAACGAGATACCGAGCGCGGCTCGGAGAAGCTCTGG
CGGCAGCGAGTCAACGAGGAACAATGCAGCTGGGGAGGCCGAAGCGAGTT
GGTTGGGATATTTAAAGAGTATTATTGCTTCTTGATCACACTTCGCAGAT
GTCGTCCAACTCTACGATTTACTACCCTCCAAACAACGAGATACCGAGCG
CGGCTCGGAGAAGCTCTGGCGGCAGCGAGTCAACGAGGAACAATGCAGCT
GGGGAGGCCGAAGCGAGTTGGTTGGGATATTTAAAGAGTATTATTGCTTC
TTGA
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