mRNA_H-elongata_contig6358.13934.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6358.13934.1
Unique NamemRNA_H-elongata_contig6358.13934.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A6H5JUJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ5_9PHAE)

HSP 1 Score: 497 bits (1280), Expect = 4.420e-169
Identity = 254/269 (94.42%), Postives = 263/269 (97.77%), Query Frame = 1 
Query:    7 ERTAEDTALVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            ERTAEDT LVLQLTNP+QREGALLELSKKREAFTDLAPILWHSYGTISALLQE+VAIYPLL+PPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDA VI+FLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLD+ GL YIC TAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPD+LR+NTFTNVLKDDVSVKRWLT LLFN+T+
Sbjct:    6 ERTAEDTQLVLQLTNPDQREGALLELSKKREAFTDLAPILWHSYGTISALLQEMVAIYPLLSPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEHGLEYICQTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDSLRNNTFTNVLKDDVSVKRWLTSLLFNLTE 274
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: D7FW54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW54_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 1.180e-168
Identity = 255/272 (93.75%), Postives = 265/272 (97.43%), Query Frame = 1 
Query:    7 ERTAEDTALVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITDDQK 822
            ERTAEDT LVLQLTNP+QREGALLELSKKREAFTDLAPILWHSYGTISALLQE+VAIYPLL+PPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDA VI+FLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLD+ GL YIC TAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALR+NTFTNVLKDDVSVKRWLT LLFN+T+ ++
Sbjct:   63 ERTAEDTQLVLQLTNPDQREGALLELSKKREAFTDLAPILWHSYGTISALLQEMVAIYPLLSPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEHGLEYICQTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRNNTFTNVLKDDVSVKRWLTSLLFNLTESKE 334
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A836CJ98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ98_9STRA)

HSP 1 Score: 463 bits (1191), Expect = 2.330e-155
Identity = 235/261 (90.04%), Postives = 251/261 (96.17%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            LV QLTNPEQREGALLELSKKREAF+DLAPILWHS+GTISALLQEIVAIYP+L+PPTLTPHASNRVCNALALLQCVASHPETRA+FL AHIPLYLYPFLNTVSK+RPFEYLRLTSLGVIGALVKMDD+ VI+FLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLD+ GL YIC TAERFYAVSTVL NMVAVLVE+PSVRLLKH+VRCYLRLSDNLRAREALRQCLPDALRD TF + LKDDVSVKRWL+QLL+NI++
Sbjct:   30 LVGQLTNPEQREGALLELSKKREAFSDLAPILWHSFGTISALLQEIVAIYPMLSPPTLTPHASNRVCNALALLQCVASHPETRAVFLNAHIPLYLYPFLNTVSKSRPFEYLRLTSLGVIGALVKMDDSDVITFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDELGLNYICATAERFYAVSTVLSNMVAVLVEAPSVRLLKHIVRCYLRLSDNLRAREALRQCLPDALRDATFASALKDDVSVKRWLSQLLYNISE 290
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A7S2V242_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V242_9STRA)

HSP 1 Score: 448 bits (1152), Expect = 2.190e-149
Identity = 228/261 (87.36%), Postives = 244/261 (93.49%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            LV+QLT+P+QRE ALLELSKKREAF DLAPILWHS+GTISALLQEIVAIYPLL+PPTL+  ASNRVCNALALLQCVASH ETRALFL AH+PLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDD+ VI FLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLD+ GL YIC TAERFYAVSTVL NMVAVL E+PSVRLLKH+VRCYLRLSDNLRAREALRQCLP+ LRD+TFT VLKDDV+V+RWL QLLFNI +
Sbjct:   25 LVVQLTDPDQRETALLELSKKREAFADLAPILWHSFGTISALLQEIVAIYPLLSPPTLSAQASNRVCNALALLQCVASHQETRALFLNAHVPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDSDVIHFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEMGLNYICATAERFYAVSTVLSNMVAVLAEAPSVRLLKHIVRCYLRLSDNLRAREALRQCLPEGLRDSTFTGVLKDDVTVRRWLAQLLFNINE 285
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A7S2S6Y0_9STRA (Hypothetical protein n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2S6Y0_9STRA)

HSP 1 Score: 446 bits (1147), Expect = 6.970e-149
Identity = 227/262 (86.64%), Postives = 245/262 (93.51%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITDD 816
            LVLQLTNPEQRE ALLELSKKREAF+DLAPILWHS+GTISALLQEI++IYP+L+PP L   ASNRVCNALALLQCVASHPETR+LFL AHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDD+ VI+FLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLD+ GL YIC TAERFYAVSTVL NMVAVLVE PSVRLLKH+VRCYLRLSDNLRAREALRQCLPD+LRD TF   L+DDV+VKRWL+QLL NI+++
Sbjct:   15 LVLQLTNPEQRESALLELSKKREAFSDLAPILWHSFGTISALLQEIMSIYPMLSPPNLPHGASNRVCNALALLQCVASHPETRSLFLSAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDSEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEMGLNYICATAERFYAVSTVLSNMVAVLVEQPSVRLLKHIVRCYLRLSDNLRAREALRQCLPDSLRDATFNVALRDDVTVKRWLSQLLINISEN 276
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A7S3AUU1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AUU1_9EUKA)

HSP 1 Score: 441 bits (1135), Expect = 5.700e-147
Identity = 225/261 (86.21%), Postives = 237/261 (90.80%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            LVL+LTNP+QRE ALLELSK+RE F DLAPILWHS+GT+SALLQEIVAIYPLLAPP+LT  ASNRVCNALALLQCVASHPETR LFL AHIPL+LYPFLNTVSK RPFEYLRLTSLGVIGALVK+DDA VI+FLL TEIIPLCLRIMETGSELSKTVATFIVQKILLD+TGL YIC TAERFYAVSTVLGN+V  LVE PS RLLKH+VRCYLRLSDN RAREALRQCLPDALRD TF   LKDDV  KRWLTQLLFNI D
Sbjct:   29 LVLELTNPDQRESALLELSKRRETFADLAPILWHSFGTVSALLQEIVAIYPLLAPPSLTAQASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKVDDADVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLGNLVGSLVEQPSARLLKHIVRCYLRLSDNPRAREALRQCLPDALRDATFQGCLKDDVITKRWLTQLLFNIND 289
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A8J5XC94_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XC94_DIALT)

HSP 1 Score: 439 bits (1128), Expect = 3.610e-146
Identity = 222/262 (84.73%), Postives = 239/262 (91.22%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITDD 816
            LV  LT+PEQREGALLELSK+REAF DLAPILWHS+GTI+ALLQEIVAIYPLL+PP+LT HASNRVCNALALLQCVASHPETR LFL AHIPL+LYPFLNTVSK RPFEYLRLTSLGVIGALVK+DDA VISFLL TEIIPLCLRIMETGSELSKTVATFIVQKILLDD GL+YIC  AERFYAVSTVL NM+ VL E PS RLLKH+VRCYLRLS+N RAREALRQCLPD+LRD TF+  LKDDVS KRWL+QLL+N+T D
Sbjct:   12 LVADLTSPEQREGALLELSKRREAFADLAPILWHSFGTIAALLQEIVAIYPLLSPPSLTAHASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKVDDAEVISFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDDMGLSYICAIAERFYAVSTVLANMMQVLAEQPSARLLKHIVRCYLRLSENPRAREALRQCLPDSLRDATFSTALKDDVSTKRWLSQLLYNLTTD 273
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: R1C1A7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C1A7_EMIHU)

HSP 1 Score: 438 bits (1126), Expect = 1.070e-145
Identity = 222/261 (85.06%), Postives = 238/261 (91.19%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            LVL+LTNPEQRE ALLELSK+RE F DLAPILWHS+GTISALLQEIVAIYPLL+PP+LT  ASNRVCNALALLQCVASHPETR LFL AHIPL+LYPFLNT+SK RPFEYLRLTSLGVIGALVK+DD  VI+FLL TEIIPLCLRIMETGSELSKTVATFIVQKILLD+TGL YIC TAERFYAVSTVLGN+V  LV+ PS RLLKH+VRCYLRLSDN RAREALRQCLPD LRD TF+  LKDDV+ KRWLTQLLFNIT+
Sbjct:   23 LVLELTNPEQREAALLELSKRRETFIDLAPILWHSFGTISALLQEIVAIYPLLSPPSLTAQASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTISKTRPFEYLRLTSLGVIGALVKVDDPDVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLGNLVGSLVDQPSARLLKHIVRCYLRLSDNPRAREALRQCLPDVLRDATFSACLKDDVTTKRWLTQLLFNITE 283
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A7S0DZ44_9EUKA (Hypothetical protein n=3 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0DZ44_9EUKA)

HSP 1 Score: 438 bits (1126), Expect = 1.970e-145
Identity = 222/261 (85.06%), Postives = 238/261 (91.19%), Query Frame = 1 
Query:   31 LVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            LV +LTNPEQRE ALLELSK+RE F DLAPILWHS+GTISALLQEIVAIYPLL+PP+LT  ASNRVCNALALLQCVASHPETR LFL AHIPL+LYPFLNTVSK RPFEYLRLTSLGVIGALVK+DDA VI+FLL TEIIPLCLRIMETGSELSKTVATFIVQKILLD+TGL YIC TAERFYAVSTVLGN+V  LVE PS RLLKH+VRCYLRLSDN RAREALRQCLP+ LRD TF+  LKDDV+ KRWLTQLLFNI++
Sbjct:   40 LVAELTNPEQRESALLELSKRRETFVDLAPILWHSFGTISALLQEIVAIYPLLSPPSLTAQASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKVDDADVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLGNLVGTLVEQPSARLLKHIVRCYLRLSDNPRAREALRQCLPEPLRDATFSGCLKDDVTTKRWLTQLLFNISE 300
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BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Match: A0A0M0K0H5_9EUKA (Cell differentiation protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0H5_9EUKA)

HSP 1 Score: 434 bits (1115), Expect = 5.750e-144
Identity = 222/269 (82.53%), Postives = 240/269 (89.22%), Query Frame = 1 
Query:    7 ERTAEDTALVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISALLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNVLKDDVSVKRWLTQLLFNITD 813
            E T +   LVL+LTNP+QRE ALLELSK+RE F DLAPILWHS+GT+SALLQEIVAIYPLL+PP LT  ASNRVCNALALLQCVASHP+TR LFL AHIPL+LYPFLNTVSK RPFEYLRLTSLGVIGALVK+DDA VI+FLL TEIIPLCLRIMETGSELSKTVATFIVQKILLD+TGL YIC TAERFYAVSTVL N+V  LVE PS RLLKH+VRC+LRLSDN RAREALRQCLPDALRD TF+  LKDDV+ KRW TQLLFNIT+
Sbjct:   19 EETDKIFVLVLELTNPDQRETALLELSKRRETFPDLAPILWHSFGTVSALLQEIVAIYPLLSPPALTAQASNRVCNALALLQCVASHPDTRTLFLNAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKVDDADVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLANLVGALVEQPSGRLLKHIVRCFLRLSDNARAREALRQCLPDALRDATFSACLKDDVTTKRWHTQLLFNITE 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6358.13934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUJ5_9PHAE4.420e-16994.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW54_ECTSI1.180e-16893.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJ98_9STRA2.330e-15590.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V242_9STRA2.190e-14987.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2S6Y0_9STRA6.970e-14986.64Hypothetical protein n=2 Tax=Dictyochophyceae TaxI... [more]
A0A7S3AUU1_9EUKA5.700e-14786.21Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8J5XC94_DIALT3.610e-14684.73Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
R1C1A7_EMIHU1.070e-14585.06Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0DZ44_9EUKA1.970e-14585.06Hypothetical protein n=3 Tax=Prymnesiophyceae TaxI... [more]
A0A0M0K0H5_9EUKA5.750e-14482.53Cell differentiation protein n=1 Tax=Chrysochromul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6358contigH-elongata_contig6358:3561..5929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score500.0
Seed ortholog evalue7.2e-139
Seed eggNOG ortholog2880.D7FW54
Preferred nameRQCD1
KEGG koko:K12606,ko:K13754
KEGG TC2.A.19.4.4
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005102,GO:0005154,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007044,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007283,GO:0007346,GO:0007548,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019439,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030014,GO:0030015,GO:0030330,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031570,GO:0031571,GO:0031581,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033135,GO:0033138,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033554,GO:0034097,GO:0034243,GO:0034248,GO:0034249,GO:0034329,GO:0034330,GO:0034641,GO:0034655,GO:0035556,GO:0035770,GO:0036464,GO:0042058,GO:0042221,GO:0042325,GO:0042327,GO:0042770,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045742,GO:0045786,GO:0045787,GO:0045893,GO:0045930,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046700,GO:0046983,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070851,GO:0070887,GO:0071156,GO:0071158,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901184,GO:1901186,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000325,GO:2000327,GO:2001141
EggNOG free text desc.positive regulation of nuclear receptor transcription coactivator activity
EggNOG OGsCOG5209@1,KOG3036@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-01_003420.1
Exons1
Model size2369
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6358.13934.1prot_H-elongata_contig6358.13934.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6358 3564..4388 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.292262-UTR-H-elongata_contig6358:3560..35631622931019.292262-UTR-H-elongata_contig6358:3560..3563Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6358 3561..3563 +
1691679664.660588-UTR-H-elongata_contig6358:3560..35631691679664.660588-UTR-H-elongata_contig6358:3560..3563Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6358 3561..3563 +
1622931019.3200924-UTR-H-elongata_contig6358:4388..59291622931019.3200924-UTR-H-elongata_contig6358:4388..5929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6358 4389..5929 +
1691679664.6872284-UTR-H-elongata_contig6358:4388..59291691679664.6872284-UTR-H-elongata_contig6358:4388..5929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6358 4389..5929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931019.3077624-CDS-H-elongata_contig6358:3563..43881622931019.3077624-CDS-H-elongata_contig6358:3563..4388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6358 3564..4388 +
1691679664.6761825-CDS-H-elongata_contig6358:3563..43881691679664.6761825-CDS-H-elongata_contig6358:3563..4388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6358 3564..4388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6358.13934.1

>prot_H-elongata_contig6358.13934.1 ID=prot_H-elongata_contig6358.13934.1|Name=mRNA_H-elongata_contig6358.13934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
MERTAEDTALVLQLTNPEQREGALLELSKKREAFTDLAPILWHSYGTISA
LLQEIVAIYPLLAPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHI
PLYLYPFLNTVSKNRPFEYLRLTSLGVIGALVKMDDAAVISFLLQTEIIP
LCLRIMETGSELSKTVATFIVQKILLDDTGLTYICHTAERFYAVSTVLGN
MVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRDNTFTNV
LKDDVSVKRWLTQLLFNITDDQKT*
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mRNA from alignment at H-elongata_contig6358:3561..5929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6358.13934.1 ID=mRNA_H-elongata_contig6358.13934.1|Name=mRNA_H-elongata_contig6358.13934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2369bp|location=Sequence derived from alignment at H-elongata_contig6358:3561..5929+ (Himanthalia elongata Himel1 dioecious)
CAGATGGAGAGGACCGCGGAAGACACTGCTCTAGTATTGCAACTGACAAA
CCCAGAACAACGAGAGGGTGCTCTTTTGGAGTTGAGCAAGAAACGCGAGG
CATTCACGGATCTCGCGCCGATATTGTGGCATTCGTATGGGACAATTTCG
GCTCTTCTGCAAGAAATCGTGGCGATATACCCTCTGCTTGCGCCCCCAAC
GTTGACCCCCCACGCCAGCAACCGAGTGTGTAACGCACTGGCTTTGCTGC
AGTGTGTGGCATCCCATCCAGAAACGAGAGCACTATTTCTGAAGGCCCAC
ATCCCGCTCTATCTGTACCCGTTCCTGAATACCGTGAGCAAGAACCGCCC
GTTTGAGTACCTCCGTCTCACGAGCCTAGGGGTGATTGGAGCCCTCGTGA
AAATGGACGATGCTGCAGTCATCAGTTTCTTGCTCCAAACGGAGATTATT
CCGTTATGCTTGCGGATAATGGAGACTGGCAGCGAGTTGTCCAAAACGGT
CGCGACTTTCATCGTCCAGAAGATTCTGCTCGATGACACAGGGCTCACGT
ATATTTGCCACACGGCGGAAAGGTTTTACGCGGTGAGCACCGTCTTGGGG
AATATGGTCGCCGTGCTGGTGGAAAGTCCATCAGTGCGACTGCTCAAGCA
CGTGGTGCGATGCTATCTTCGGTTATCTGACAATTTGCGAGCGCGGGAAG
CCCTCCGACAATGTCTACCAGACGCTTTACGGGATAATACATTTACAAAT
GTTCTCAAGGACGATGTGTCTGTCAAGCGGTGGCTGACCCAACTTCTCTT
CAACATAACGGATGATCAGAAGACTTGAAATCGGAGTTGAGGTCAGTTAA
CTTTTTTTGCATTGTGGAAAGGTTTTAAAAATATTTGATTATGTGAAGTT
CCTTCTTCATGCTGTATGTAGCTCATACCTTGGCTTCGAAAGTTGTTTTA
CCTACCCTCTTATCAACCCTCTGATTCGACCGTAAAACCTGTTCGTGCTT
ACCCTCCGAATGTATCGCAGCTTAACATAACTGGTGAAAAGGCATGAACG
AGAAGCTTTCCAGAAGTATCTTTTTGTAAAGTCTTACCCTAATGACATTC
AAAGTGCCTTGCGGTCAGGGAGGGCTGGAGGTATCTATTTAGGCTTTTAG
GAGATCAGTTTTAACGCTGCTGGGTTTCGGAAATTTAATGTGGCTTTTCT
GGCGAATCGTCGTCCAGTGACATGCTTGTGACGCAGAGGTAGGATTTTCT
CGCCGCCCCTGGAGGAATGCAGACGCCGGGGTTGAGTGGGAAGGTCCGTA
TCCCACTGCTTTGACGAAAAGCGGTACAGGCTCTTGAACAGCAACATGCA
CTGTACTTCCTTTTTCATAGATCCCTCTTGCATTTTGTTGTTGCGGTTAT
AATGCAAGCGGTGTAGGATTGCTATTCCTAGATCCGTTGGGTAGTAGATT
TCATAGTAGTCTACCCCTTCAAACAAGGCTGCTGCTGTTGACTGGTCATC
CGAATGTGACACCGAAGTCCTCTTGTTTACTACCAAGCGTGGAAGTCAGG
CTGTTATGACTTTTTTGAACCAGGATTTGATGACGATATGGTTACAATCG
TACCCAGTAAGTTTTATGACGATCATCGTTTCAAGTTGCTGCTTCAAACA
CGAGAATCGGTCTTTGGCCCTGTCTTCTCGTTCTCGTGCTGTTTTCTCGG
TACAAACGACAAACCTCGGGGATGGATGCCACTGTCCCTGTCTGATGTTT
TTGGCGACATTGCGTGCACCGCTCTGTATTTGGAAATATGCGCGAACGTT
TTTAATACAGGGTAAAATAGGTACAGGGAACAACACTCCCCTGGGAACCT
GTCTCCCCTTCCGATCTTCCATGCAATGACGGTGGGAAATGCAAAAGGGA
TGTTTGTAACATTTTCGTAGGGACCCGGATGAAATAATTCCCACAAATAG
CAGTATTTCGTACGATGGCCTTTTTTTCTAGGAAGGTATGGGAATGGTCT
CCGATATTGTGTTATAGCGTCTCTTAGGTTACCTTGCTACATTGGTGCTG
CTTTGGGTGGGATTTCCGTTGCGGGATGTTTCGAGACAACCGTTTTTCGA
AATGGTTCGCCGCATGCGGTGGAATTTTTCACGTGGATTCTGCTAATGTG
TTGTCATCTCATTTATTCTCGACGTCAGACTTGTGGGCGCACCAGCCGGG
GTAGGGTCATACAGGAGGAAGGTCACACTGAATTTCTCCACCTTCCTTCT
GTGATGCTTGCCTTAATTTTTTATCGTGAGAAGGATTTAGATTTTCCTCG
TCACAGTGAAGTCGAATTTTGCGTACCCACGAAATAATCGTTCTCCATTT
GTTGCGCATGGTGTGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig6358:3561..5929+

>mRNA_H-elongata_contig6358.13934.1 ID=mRNA_H-elongata_contig6358.13934.1|Name=mRNA_H-elongata_contig6358.13934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig6358:3561..5929+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAGGACCGCGGAAGACACTGCTCTAGTATTGCAACTGACAAACCC
AGAACAACGAGAGGGTGCTCTTTTGGAGTTGAGCAAGAAACGCGAGGCAT
TCACGGATCTCGCGCCGATATTGTGGCATTCGTATGGGACAATTTCGGCT
CTTCTGCAAGAAATCGTGGCGATATACCCTCTGCTTGCGCCCCCAACGTT
GACCCCCCACGCCAGCAACCGAGTGTGTAACGCACTGGCTTTGCTGCAGT
GTGTGGCATCCCATCCAGAAACGAGAGCACTATTTCTGAAGGCCCACATC
CCGCTCTATCTGTACCCGTTCCTGAATACCGTGAGCAAGAACCGCCCGTT
TGAGTACCTCCGTCTCACGAGCCTAGGGGTGATTGGAGCCCTCGTGAAAA
TGGACGATGCTGCAGTCATCAGTTTCTTGCTCCAAACGGAGATTATTCCG
TTATGCTTGCGGATAATGGAGACTGGCAGCGAGTTGTCCAAAACGGTCGC
GACTTTCATCGTCCAGAAGATTCTGCTCGATGACACAGGGCTCACGTATA
TTTGCCACACGGCGGAAAGGTTTTACGCGGTGAGCACCGTCTTGGGGAAT
ATGGTCGCCGTGCTGGTGGAAAGTCCATCAGTGCGACTGCTCAAGCACGT
GGTGCGATGCTATCTTCGGTTATCTGACAATTTGCGAGCGCGGGAAGCCC
TCCGACAATGTCTACCAGACGCTTTACGGGATAATACATTTACAAATGTT
CTCAAGGACGATGTGTCTGTCAAGCGGTGGCTGACCCAACTTCTCTTCAA
CATAACGGATGATCAGAAGACTTGAATGGAGAGGACCGCGGAAGACACTG
CTCTAGTATTGCAACTGACAAACCCAGAACAACGAGAGGGTGCTCTTTTG
GAGTTGAGCAAGAAACGCGAGGCATTCACGGATCTCGCGCCGATATTGTG
GCATTCGTATGGGACAATTTCGGCTCTTCTGCAAGAAATCGTGGCGATAT
ACCCTCTGCTTGCGCCCCCAACGTTGACCCCCCACGCCAGCAACCGAGTG
TGTAACGCACTGGCTTTGCTGCAGTGTGTGGCATCCCATCCAGAAACGAG
AGCACTATTTCTGAAGGCCCACATCCCGCTCTATCTGTACCCGTTCCTGA
ATACCGTGAGCAAGAACCGCCCGTTTGAGTACCTCCGTCTCACGAGCCTA
GGGGTGATTGGAGCCCTCGTGAAAATGGACGATGCTGCAGTCATCAGTTT
CTTGCTCCAAACGGAGATTATTCCGTTATGCTTGCGGATAATGGAGACTG
GCAGCGAGTTGTCCAAAACGGTCGCGACTTTCATCGTCCAGAAGATTCTG
CTCGATGACACAGGGCTCACGTATATTTGCCACACGGCGGAAAGGTTTTA
CGCGGTGAGCACCGTCTTGGGGAATATGGTCGCCGTGCTGGTGGAAAGTC
CATCAGTGCGACTGCTCAAGCACGTGGTGCGATGCTATCTTCGGTTATCT
GACAATTTGCGAGCGCGGGAAGCCCTCCGACAATGTCTACCAGACGCTTT
ACGGGATAATACATTTACAAATGTTCTCAAGGACGATGTGTCTGTCAAGC
GGTGGCTGACCCAACTTCTCTTCAACATAACGGATGATCAGAAGACTTGA
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