mRNA_H-elongata_contig63546.13931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63546.13931.1
Unique NamemRNA_H-elongata_contig63546.13931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63546.13931.1 vs. uniprot
Match: D7FS92_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS92_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 5.650e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:   16 QLYLVYFIRSGIGDFGLSRMAAESPELVALELSGCLRVTSSGAGSLSALRKLERVDLSRCR 198
            +L  V   RSGIG+ GLSR++A SP L  L+L GC+R+T SGA +LSAL+ LE +DLS CR
Sbjct:  273 KLERVCLARSGIGNEGLSRLSAGSPLLRDLDLCGCVRLTESGAHTLSALQDLETLDLSNCR 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63546.13931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS92_ECTSI5.650e-1157.38Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63546contigH-elongata_contig63546:2933..3133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.2e-09
Seed eggNOG ortholog2880.D7FS92
KEGG koko:K10275,ko:K10280
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.9571345-CDS-H-elongata_contig63546:2932..31331622931018.9571345-CDS-H-elongata_contig63546:2932..3133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63546 2933..3133 +
1691679664.464193-CDS-H-elongata_contig63546:2932..31331691679664.464193-CDS-H-elongata_contig63546:2932..3133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63546 2933..3133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63546.13931.1prot_H-elongata_contig63546.13931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63546 2933..3133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63546.13931.1

>prot_H-elongata_contig63546.13931.1 ID=prot_H-elongata_contig63546.13931.1|Name=mRNA_H-elongata_contig63546.13931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
SLAPNQLYLVYFIRSGIGDFGLSRMAAESPELVALELSGCLRVTSSGAGS
LSALRKLERVDLSRCR*
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mRNA from alignment at H-elongata_contig63546:2933..3133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63546.13931.1 ID=mRNA_H-elongata_contig63546.13931.1|Name=mRNA_H-elongata_contig63546.13931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig63546:2933..3133+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGCCCCAAATCAGCTGTACCTGGTATATTTTATTAGGAGCGGCAT
CGGTGACTTCGGCTTGTCTCGAATGGCGGCGGAATCTCCCGAGCTGGTAG
CGCTCGAGCTCTCCGGTTGCCTGCGTGTTACGTCGAGCGGTGCGGGGAGT
TTATCCGCACTGCGTAAGCTGGAGAGGGTAGATCTCAGCCGCTGCAGGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig63546:2933..3133+

>mRNA_H-elongata_contig63546.13931.1 ID=mRNA_H-elongata_contig63546.13931.1|Name=mRNA_H-elongata_contig63546.13931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig63546:2933..3133+ (Himanthalia elongata Himel1 dioecious)
TCCCTCGCCCCAAATCAGCTGTACCTGGTATATTTTATTAGGAGCGGCAT
CGGTGACTTCGGCTTGTCTCGAATGGCGGCGGAATCTCCCGAGCTGGTAG
CGCTCGAGCTCTCCGGTTGCCTGCGTGTTACGTCGAGCGGTGCGGGGAGT
TTATCCGCACTGCGTAAGCTGGAGAGGGTAGATCTCAGCCGCTGCAGGTG
ATCCCTCGCCCCAAATCAGCTGTACCTGGTATATTTTATTAGGAGCGGCA
TCGGTGACTTCGGCTTGTCTCGAATGGCGGCGGAATCTCCCGAGCTGGTA
GCGCTCGAGCTCTCCGGTTGCCTGCGTGTTACGTCGAGCGGTGCGGGGAG
TTTATCCGCACTGCGTAAGCTGGAGAGGGTAGATCTCAGCCGCTGCAGGT
GA
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