mRNA_H-elongata_contig6354.13930.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 169 bits (427), Expect = 7.200e-48 Identity = 95/226 (42.04%), Postives = 138/226 (61.06%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTFN+ T A +G N IGH + ++++ C GCDVIGLQET+R+G I GY + +S G K ++ HGVG+AI E I G++ +ECIS L+K R+ I VTFVV YAPTE +T G K + A+++ + V +R+++ +L+ ANART +R +G DA K++G GRD++N NG+ L N+L+L NT+ PK GV +TF
Sbjct: 8 DLSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRDGCCDA--KIMGANGRDIMNNNGERLLELASDNQLSLTNTYFPTPKGGVQHTF 231
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.230e-46 Identity = 96/226 (42.48%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTFN+RT A +G N IGH + ++++ C GCDVIGLQET+R G I GY + +S G K ++ HGVG+AI E + G++ +ECIS L+K R+ I VTF+V YAPTE TEG K + A+++ + V +R+++ +L+DANART +R +G DA K++G GRD++N NG+ L N+L+L NT+ PK GV +TF
Sbjct: 174 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTF 397
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 171 bits (433), Expect = 5.450e-46 Identity = 96/226 (42.48%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTFN+RT A +G N IGH + ++++ C GCDVIGLQET+R G I GY + +S G K ++ HGVG+AI E + G++ +ECIS L+K R+ I VTFVV YAPTE T G K + A+++ + V +R+++ +L+DANART +R +G DA K++G GRD++N NG+ L N+L+L NT++ PK GV +TF
Sbjct: 85 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGGVQHTF 308
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 165 bits (418), Expect = 6.020e-45 Identity = 93/226 (41.15%), Postives = 135/226 (59.73%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTFN+RT A +G N IGH + ++++ C GCDVIGLQET+R G I GY + +S G K ++ HGVG+ I E + G++ +ECI L+K R+ I V FVV YAPTE T G K + A+++ + V +R+++ +L+DANART +R +G DA K++G GRD++N NG+ L N+L+L NT+ PK GV +TF
Sbjct: 80 DLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTF 303
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 169 bits (427), Expect = 2.010e-44 Identity = 95/226 (42.04%), Postives = 138/226 (61.06%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTFN+ T A +G N IGH + ++++ C GCDVIGLQET+R+G I GY + +S G K ++ HGVG+AI E + G++ +ECIS L+K R+ I VTFVV YAPTE T G K + A+++ + V +R+++ +L+DANART +R +G DA K++G GRD++N NG+ L N+L+L NT+ PK GV +TF
Sbjct: 656 DLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTF 879
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.360e-44 Identity = 96/226 (42.48%), Postives = 138/226 (61.06%), Query Frame = 1
Query: 37 DELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAP-TEEATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
D++ FGTFN+RT A +G N IGH + ++++ C T GCDVIGLQET+R+G I GY V +S G K ++ HGVG+AI E + + AG++ +ECIS L+K R+ I VTFVV YAP T T G K A+++ + V +R+++ +L+DANA T R +G DA K++G GRD++N NG+ N+L+L NT+ PK GV +TF
Sbjct: 121 DDVSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDAAIREVHSRDHLVVLMDANAHTGGRRDGCCDA--KIMGAYGRDIMNNNGERFLGLALGNQLSLTNTYFRTPKGGVQHTF 344
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 157 bits (398), Expect = 5.740e-43 Identity = 89/218 (40.83%), Postives = 132/218 (60.55%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIP 669
+L FGTFN+RT A +G N IGH + ++++ C GCDVIGLQET+R+G I GY + +S G K ++ HGVG+AI E + G++ +ECI L+K R+ I +TFVV YAPTE T G K + A+++ + V + +++ +L+DANART +R +G DA K++GV GRD++N NG+ L N+L+L NT+ P
Sbjct: 147 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCCDA--KIMGVYGRDIMNNNGERLLGLASNNQLSLTNTYFRTP 362
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 162 bits (409), Expect = 4.530e-42 Identity = 92/226 (40.71%), Postives = 136/226 (60.18%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTEEA--TEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTF++RT +G N IGH + +++ GCDVIGLQET+R+G I GY + +S G K ++ + GVG+AI E + G++ +ECIS L+K R+ I VTFVV YAPTE T G K + A+++ + V +R+++ +L+DANART +R +G DA K++G GRD++N NG+ L N+L+L NT+ PK GV +TF
Sbjct: 154 DLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTF 377
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 159 bits (401), Expect = 6.400e-41 Identity = 91/226 (40.27%), Postives = 135/226 (59.73%), Query Frame = 1
Query: 40 ELIFGTFNIRTAAVNGVNGIGH-IDSLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
+L FGTFN+RT A +G N IGH + ++++ GCDVIGLQET+R+G I GY + +S G K ++ HGVG+AI E + G++ +ECIS L+K R+ I + V VV YAPTE T G K + A+++ + V +R+++ +L+DANART +R +G DA K++G GRD++N NG+ N+L+L NT+ PK V +TF
Sbjct: 132 DLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERRLGLASDNQLSLTNTYFRTPKGKVQHTF 355
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 148 bits (373), Expect = 2.140e-39 Identity = 82/201 (40.80%), Postives = 120/201 (59.70%), Query Frame = 1
Query: 112 SLLRPCDTRGCDVIGLQETKRDGYSEITASGYRVYFSCGCTGVKGEKEQHGVGLAIMEEIVNKAGKDDIAIECISACLLKARISIKYNF-VTFVVAYAPTE--EATEG----EKAKYIEAINSTVSSVPAREYVFILIDANARTEKRGEGGGDAESKVLGVCGRDVLNKNGKLLPSFTEYNKLALLNTFLCIPKNGVSYTF 693
++++ C GCDVIGLQET+R+G I GY + +S G K ++ HGVG+AI E + G++ +ECIS L+K R+ I VTFVV YAPTE T G K + A+++ + V +R+++ +L+DANART +R GG ++KVLG GRD++N NG+ L N+ +L NT+ PK GV +TF
Sbjct: 2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTF 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6354.13930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6354.13930.1 >prot_H-elongata_contig6354.13930.1 ID=prot_H-elongata_contig6354.13930.1|Name=mRNA_H-elongata_contig6354.13930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp MKHRTTRVRSLLDELIFGTFNIRTAAVNGVNGIGHIDSLLRPCDTRGCDVback to top mRNA from alignment at H-elongata_contig6354:1045..1740- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6354.13930.1 ID=mRNA_H-elongata_contig6354.13930.1|Name=mRNA_H-elongata_contig6354.13930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at H-elongata_contig6354:1045..1740- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6354:1045..1740- >mRNA_H-elongata_contig6354.13930.1 ID=mRNA_H-elongata_contig6354.13930.1|Name=mRNA_H-elongata_contig6354.13930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig6354:1045..1740- (Himanthalia elongata Himel1 dioecious)back to top |