mRNA_H-elongata_contig63472.13923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63472.13923.1
Unique NamemRNA_H-elongata_contig63472.13923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63472.13923.1 vs. uniprot
Match: A0A0J7K9Y8_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9Y8_LASNI)

HSP 1 Score: 57.0 bits (136), Expect = 1.120e-6
Identity = 45/168 (26.79%), Postives = 73/168 (43.45%), Query Frame = 1 
Query:   16 VQRSNAPNDAWRKLETHYRAKGTREILRVSHEINGKIMERRGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIVSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNPKAMSASKGHITVNHGKEGDRRHHPKFNRKCFNCGKGGHYARDCRTSEE 519
            +Q S  P +AW KL   +  +G    + +   +    +E      +++  I   A  L  L D  V E     +++SGLP +Y+     LE++           + G+     L Q+   +A+ ++ G     + K G +    K  RKCF CGK GH+A  CR  EE
Sbjct:   73 IQGSTTPREAWNKLNNAFEDRGLTRKVGLLRTLTSTRLEDCTSVEEYVNRITMTAHSLKEL-DFDVNEEMVGALLLSGLPEEYKPMIMGLESSGTP--------ITGDAMKVKLMQEVKLEAVQSTAGSEAALYTKAGKKNAKNKQKRKCFTCGKIGHFAAKCRNKEE 231
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BLAST of mRNA_H-elongata_contig63472.13923.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-6
Identity = 46/163 (28.22%), Postives = 76/163 (46.63%), Query Frame = 1 
Query:   43 AWRKLETHYRAKGTREILRVSHEINGKIMERRGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIVSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNPKAMSASKGHITVN-----HGKEGDR----RHHPKFNRKCFNCGKGGHYARDC 504
            AW  L   Y        + ++  ++   ME      K + + D L   L  LG+  + E R+ VI++S LPT+YE+ C ++EN        E++  +  +Y RL +++   +A+ A+             G +G +    R +  F  KCFNCG+ GH  RDC
Sbjct:   83 AWNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIVENAK-DFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDC 243
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BLAST of mRNA_H-elongata_contig63472.13923.1 vs. uniprot
Match: H3GVH0_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVH0_PHYRM)

HSP 1 Score: 52.0 bits (123), Expect = 9.200e-5
Identity = 44/170 (25.88%), Postives = 78/170 (45.88%), Query Frame = 1 
Query:   16 VQRSNAPNDAWRKLETHYRAKGTREILRVSHEINGKIMERRGDPFKFMMEIDRLAADLNRLGDKSVTELRKCVIIVSGLPTDYEMECRMLENNPVGLNRAEIERVVGNQYNRLLRQQQNPK-----AMSASKGHITVNHGKEGDRRHHPKFNRKCFNCGKGGHYARDCRT 510
            V  + +  +AW KLE  +RA+     L +  + +           K + E+++L  ++   G +   E   C  ++  LP  YE    +++   + +   ++  +VG      +RQ+ + +     A+ A+KG+      K+   R  P     CFNCGK GHYARDCR+
Sbjct:   59 VVTAKSAKEAWDKLEKFHRAQDVANRLWLKEKFSS-FKYTTSSVSKHVTELEQLVLEMKSAGCEPSDE-DVCATLLRSLPASYES---LVQAFRMSMTELKLTDLVGKSIAEEVRQKDSTRIEEATALLANKGYAKDTKKKQQGGRRKPSG--ACFNCGKIGHYARDCRS 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63472.13923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0J7K9Y8_LASNI1.120e-626.79Retrovirus-related pol polyprotein from transposon... [more]
H3H572_PHYRM2.580e-628.22Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
H3GVH0_PHYRM9.200e-525.88CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63472contigH-elongata_contig63472:1068..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.0435185-CDS-H-elongata_contig63472:1067..15861622931018.0435185-CDS-H-elongata_contig63472:1067..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63472 1068..1586 -
1691679664.1123433-CDS-H-elongata_contig63472:1067..15861691679664.1123433-CDS-H-elongata_contig63472:1067..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63472 1068..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63472.13923.1prot_H-elongata_contig63472.13923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63472 1068..1586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63472.13923.1

>prot_H-elongata_contig63472.13923.1 ID=prot_H-elongata_contig63472.13923.1|Name=mRNA_H-elongata_contig63472.13923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MTLEIVQRSNAPNDAWRKLETHYRAKGTREILRVSHEINGKIMERRGDPF
KFMMEIDRLAADLNRLGDKSVTELRKCVIIVSGLPTDYEMECRMLENNPV
GLNRAEIERVVGNQYNRLLRQQQNPKAMSASKGHITVNHGKEGDRRHHPK
FNRKCFNCGKGGHYARDCRTSEE
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mRNA from alignment at H-elongata_contig63472:1068..1586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63472.13923.1 ID=mRNA_H-elongata_contig63472.13923.1|Name=mRNA_H-elongata_contig63472.13923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig63472:1068..1586- (Himanthalia elongata Himel1 dioecious)
ATGACACTTGAAATCGTGCAACGTAGCAACGCACCGAACGACGCGTGGCG
AAAGCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATACTTCGTG
TGTCCCATGAAATCAACGGGAAAATAATGGAACGACGTGGGGACCCATTC
AAATTTATGATGGAAATTGACAGGCTAGCAGCTGATCTCAACCGTTTGGG
CGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCGTATCTGGTC
TCCCTACTGACTACGAGATGGAGTGTCGTATGTTGGAAAATAACCCTGTT
GGTCTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTACAATAG
ACTTCTCAGGCAACAACAGAATCCGAAGGCTATGTCAGCATCGAAGGGTC
ACATCACGGTGAATCACGGAAAGGAGGGGGATAGAAGACACCACCCCAAA
TTCAACCGAAAGTGCTTCAATTGCGGAAAGGGAGGCCACTACGCTCGGGA
CTGCAGGACGAGTGAGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig63472:1068..1586-

>mRNA_H-elongata_contig63472.13923.1 ID=mRNA_H-elongata_contig63472.13923.1|Name=mRNA_H-elongata_contig63472.13923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig63472:1068..1586- (Himanthalia elongata Himel1 dioecious)
ATGACACTTGAAATCGTGCAACGTAGCAACGCACCGAACGACGCGTGGCG
AAAGCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATACTTCGTG
TGTCCCATGAAATCAACGGGAAAATAATGGAACGACGTGGGGACCCATTC
AAATTTATGATGGAAATTGACAGGCTAGCAGCTGATCTCAACCGTTTGGG
CGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCGTATCTGGTC
TCCCTACTGACTACGAGATGGAGTGTCGTATGTTGGAAAATAACCCTGTT
GGTCTTAACAGGGCTGAGATTGAGCGTGTCGTAGGGAATCAGTACAATAG
ACTTCTCAGGCAACAACAGAATCCGAAGGCTATGTCAGCATCGAAGGGTC
ACATCACGGTGAATCACGGAAAGGAGGGGGATAGAAGACACCACCCCAAA
TTCAACCGAAAGTGCTTCAATTGCGGAAAGGGAGGCCACTACGCTCGGGA
CTGCAGGACGAGTGAGGAAATGACACTTGAAATCGTGCAACGTAGCAACG
CACCGAACGACGCGTGGCGAAAGCTTGAAACACACTACAGAGCGAAGGGA
ACTAGAGAGATACTTCGTGTGTCCCATGAAATCAACGGGAAAATAATGGA
ACGACGTGGGGACCCATTCAAATTTATGATGGAAATTGACAGGCTAGCAG
CTGATCTCAACCGTTTGGGCGACAAATCCGTGACTGAATTAAGAAAATGC
GTAATTATCGTATCTGGTCTCCCTACTGACTACGAGATGGAGTGTCGTAT
GTTGGAAAATAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGTGTCG
TAGGGAATCAGTACAATAGACTTCTCAGGCAACAACAGAATCCGAAGGCT
ATGTCAGCATCGAAGGGTCACATCACGGTGAATCACGGAAAGGAGGGGGA
TAGAAGACACCACCCCAAATTCAACCGAAAGTGCTTCAATTGCGGAAAGG
GAGGCCACTACGCTCGGGACTGCAGGACGAGTGAGGAA
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