mRNA_H-elongata_contig63469.13922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63469.13922.1
Unique NamemRNA_H-elongata_contig63469.13922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63469.13922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63469contigH-elongata_contig63469:250..1009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-18_004170.1
Exons1
Model size762
Cds size459
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.9648755-UTR-H-elongata_contig63469:249..5501622931017.9648755-UTR-H-elongata_contig63469:249..550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63469 250..550 +
1691679664.0860164-UTR-H-elongata_contig63469:249..5501691679664.0860164-UTR-H-elongata_contig63469:249..550Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63469 250..550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.9872332-CDS-H-elongata_contig63469:550..10091622931017.9872332-CDS-H-elongata_contig63469:550..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63469 551..1009 +
1691679664.0955853-CDS-H-elongata_contig63469:550..10091691679664.0955853-CDS-H-elongata_contig63469:550..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63469 551..1009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63469.13922.1prot_H-elongata_contig63469.13922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63469 551..1009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63469.13922.1

>prot_H-elongata_contig63469.13922.1 ID=prot_H-elongata_contig63469.13922.1|Name=mRNA_H-elongata_contig63469.13922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MSINDHPRADISASEARVNSRLSEGDPATGFESGLNPLYGSEIMGGDSVS
SHDVLYTPSGNTKHAKENGTRTAATPPTENSVTPGAAAMEALAPRRSSST
QAKRSNAHGSSPQSTITVSTTHSSSSSRVPSRNISNGKKSVRRSSTKGGR
RRE
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mRNA from alignment at H-elongata_contig63469:250..1009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63469.13922.1 ID=mRNA_H-elongata_contig63469.13922.1|Name=mRNA_H-elongata_contig63469.13922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=760bp|location=Sequence derived from alignment at H-elongata_contig63469:250..1009+ (Himanthalia elongata Himel1 dioecious)
GTGGTTAACTCTCACTGAAAATCGAAGGAGAGTGCTATTATAGTACAGCA
GCAGGGGTCTGTATATGCTTAGAACTTCCTATTCCGCGAAACAACACCGT
CAGAGGTGGTACCAGGTTGAGTCGATTTTACCAGGCCCACCGAACTACGG
CTGAACTGCGGAGACGTGGGATCTGTATCCTCTTGGAAAGGGCGAGAATA
GCGGGGGAAGGGGAAGAAGCAAGTGACTCGCCGGAAAAATCGGGGTCCTG
TAAAAGTCTCCGGTCGGCCCACTGCAGACTGCGCTGAGCACCCCTCCGCG
GATGTCTATCAATGATCACCCTCGAGCCGACATTAGTGCCTCGGAAGCTA
GGGTGAATTCGCGTTTGAGTGAGGGCGACCCCGCGACGGGATTCGAGTCG
GGGTTGAACCCTCTCTACGGCTCAGAAATCATGGGTGGAGACTCGGTTTC
TTCGCATGACGTTTTATACACGCCCTCGGGAAACACGAAACACGCCAAAG
AAAACGGGACGAGGACCGCAGCCACCCCTCCCACGGAAAACTCCGTGACT
CCAGGGGCAGCGGCGATGGAGGCTTTGGCACCACGACGCTCTTCGTCCAC
CCAAGCTAAGCGCTCGAATGCGCACGGAAGCTCGCCTCAATCGACTATAA
CAGTCTCAACTACTCACAGCTCCTCGAGCTCCAGGGTTCCATCTAGGAAT
ATCTCGAATGGCAAAAAGAGCGTAAGGAGAAGCTCAACAAAGGGTGGCAG
AAGACGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig63469:250..1009+

>mRNA_H-elongata_contig63469.13922.1 ID=mRNA_H-elongata_contig63469.13922.1|Name=mRNA_H-elongata_contig63469.13922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig63469:250..1009+ (Himanthalia elongata Himel1 dioecious)
ATGTCTATCAATGATCACCCTCGAGCCGACATTAGTGCCTCGGAAGCTAG
GGTGAATTCGCGTTTGAGTGAGGGCGACCCCGCGACGGGATTCGAGTCGG
GGTTGAACCCTCTCTACGGCTCAGAAATCATGGGTGGAGACTCGGTTTCT
TCGCATGACGTTTTATACACGCCCTCGGGAAACACGAAACACGCCAAAGA
AAACGGGACGAGGACCGCAGCCACCCCTCCCACGGAAAACTCCGTGACTC
CAGGGGCAGCGGCGATGGAGGCTTTGGCACCACGACGCTCTTCGTCCACC
CAAGCTAAGCGCTCGAATGCGCACGGAAGCTCGCCTCAATCGACTATAAC
AGTCTCAACTACTCACAGCTCCTCGAGCTCCAGGGTTCCATCTAGGAATA
TCTCGAATGGCAAAAAGAGCGTAAGGAGAAGCTCAACAAAGGGTGGCAGA
AGACGGGAGATGTCTATCAATGATCACCCTCGAGCCGACATTAGTGCCTC
GGAAGCTAGGGTGAATTCGCGTTTGAGTGAGGGCGACCCCGCGACGGGAT
TCGAGTCGGGGTTGAACCCTCTCTACGGCTCAGAAATCATGGGTGGAGAC
TCGGTTTCTTCGCATGACGTTTTATACACGCCCTCGGGAAACACGAAACA
CGCCAAAGAAAACGGGACGAGGACCGCAGCCACCCCTCCCACGGAAAACT
CCGTGACTCCAGGGGCAGCGGCGATGGAGGCTTTGGCACCACGACGCTCT
TCGTCCACCCAAGCTAAGCGCTCGAATGCGCACGGAAGCTCGCCTCAATC
GACTATAACAGTCTCAACTACTCACAGCTCCTCGAGCTCCAGGGTTCCAT
CTAGGAATATCTCGAATGGCAAAAAGAGCGTAAGGAGAAGCTCAACAAAG
GGTGGCAGAAGACGGGAG
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