mRNA_H-elongata_contig63462.13921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63462.13921.1
Unique NamemRNA_H-elongata_contig63462.13921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63462.13921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63462contigH-elongata_contig63462:2789..3261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.8882263-CDS-H-elongata_contig63462:2788..28971622931017.8882263-CDS-H-elongata_contig63462:2788..2897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63462 2789..2897 +
1691679664.0659084-CDS-H-elongata_contig63462:2788..28971691679664.0659084-CDS-H-elongata_contig63462:2788..2897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63462 2789..2897 +
1622931017.9043362-CDS-H-elongata_contig63462:3103..32611622931017.9043362-CDS-H-elongata_contig63462:3103..3261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63462 3104..3261 +
1691679664.076814-CDS-H-elongata_contig63462:3103..32611691679664.076814-CDS-H-elongata_contig63462:3103..3261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63462 3104..3261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63462.13921.1prot_H-elongata_contig63462.13921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63462 2789..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63462.13921.1

>prot_H-elongata_contig63462.13921.1 ID=prot_H-elongata_contig63462.13921.1|Name=mRNA_H-elongata_contig63462.13921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GSGGGSEGSAGGIGGFLGSIMGSISETHKSVADTAAVDRVAQAQEQAIKQ
RVERFKGEVIEKLEAFSTDPSSISHAFPHVEKSLRAIQ*
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mRNA from alignment at H-elongata_contig63462:2789..3261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63462.13921.1 ID=mRNA_H-elongata_contig63462.13921.1|Name=mRNA_H-elongata_contig63462.13921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=473bp|location=Sequence derived from alignment at H-elongata_contig63462:2789..3261+ (Himanthalia elongata Himel1 dioecious)
GGCTCTGGCGGCGGTAGCGAGGGAAGCGCAGGGGGAATCGGAGGCTTCCT
AGGGTCGATAATGGGCTCCATCAGCGAGACGCACAAGAGCGTGGCGGATA
CGGCCGCTGGTGAGAGGGCGGTCAATCGTCCAGCCCGAGGCTAATGGTCC
CCTTTAGTTCGATCCCTATTTTTCGAGCGACCTTTCTATGTATCAGCTGC
CGAAGCTCTCCCCCCCTTTGTTTGAAGGTAGGAGGGGGCGGATCGTGTAC
CAAGATCGTGAGATCCCACGTGAGGAGCTGTGACCATCCGATTTCCCCCC
TTCCCGCTCCAAAAGTTGACAGGGTTGCACAAGCCCAAGAGCAGGCAATC
AAGCAGCGCGTGGAGCGATTCAAAGGGGAAGTGATAGAAAAGCTGGAGGC
GTTTTCAACCGACCCGTCATCTATATCCCACGCTTTTCCTCACGTGGAGA
AGAGCCTCCGTGCTATCCAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig63462:2789..3261+

>mRNA_H-elongata_contig63462.13921.1 ID=mRNA_H-elongata_contig63462.13921.1|Name=mRNA_H-elongata_contig63462.13921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig63462:2789..3261+ (Himanthalia elongata Himel1 dioecious)
GGCTCTGGCGGCGGTAGCGAGGGAAGCGCAGGGGGAATCGGAGGCTTCCT
AGGGTCGATAATGGGCTCCATCAGCGAGACGCACAAGAGCGTGGCGGATA
CGGCCGCTGGGCTCTGGCGGCGGTAGCGAGGGAAGCGCAGGGGGAATCGG
AGGCTTCCTAGGGTCGATAATGGGCTCCATCAGCGAGACGCACAAGAGCG
TGGCGGATACGGCCGCTGTTGACAGGGTTGCACAAGCCCAAGAGCAGGCA
ATCAAGCAGCGCGTGGAGCGATTCAAAGGGGAAGTGATAGAAAAGCTGGA
GGCGTTTTCAACCGACCCGTCATCTATATCCCACGCTTTTCCTCACGTGG
AGAAGAGCCTCCGTGCTATCCAGTGATTGACAGGGTTGCACAAGCCCAAG
AGCAGGCAATCAAGCAGCGCGTGGAGCGATTCAAAGGGGAAGTGATAGAA
AAGCTGGAGGCGTTTTCAACCGACCCGTCATCTATATCCCACGCTTTTCC
TCACGTGGAGAAGAGCCTCCGTGCTATCCAGTGA
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