mRNA_H-elongata_contig6336.13914.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.910e-33 Identity = 91/145 (62.76%), Postives = 102/145 (70.34%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGF-SRADQARVAASVASGVGFIGAGVITTAGKG--------DGRGRQSST---------DMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISRVQQSVLSKLYRVRLILGPRLVQ 381
SLVA+GAC FT VSQ GF +ADQARVAASVASGVGFIGAGVITT+GK + RGR S D+DG+V+GLTTASAIWITAGLGMACG GLLF A +G LTV +LKIS V SV K RVR +L P+L Q
Sbjct: 63 SLVALGACTFTLVSQLGFVGKADQARVAASVASGVGFIGAGVITTSGKEASSMRESLNTRGRGGSNFPGTTVSMNDVDGEVKGLTTASAIWITAGLGMACGAGLLFIAMLGAGLTVGILKISEVTTSVQKKWARVRSVLRPKLAQ 207
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A835YXE4_9STRA (MgtC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE4_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.680e-26 Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGFSRADQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISRVQQSVLSKLYR 348
SLVA+GA FT VS +GFS D R+AA+VASGVGF+GAG IT R + S+D+D DVRGLTTA+AIWITAGLGMA G G+ FTA GT +T+ VLK+S ++ + ++ R
Sbjct: 16 SLVALGAATFTIVSAYGFSSGDPGRIAANVASGVGFLGAGTITH----PKRYIKGSSDIDSDVRGLTTAAAIWITAGLGMAAGAGMFFTAIAGTVITITVLKMSNLKSVMFRRVSR 127
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A835YH54_9STRA (MgtC/SapB/SrpB transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH54_9STRA) HSP 1 Score: 103 bits (258), Expect = 5.010e-24 Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGFSRADQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISRVQ 321
+LV++GA FT VS +GFS D RVAA+VASGVGF+GAG IT K Q S+++D DVRGLTTA+AIWI AGLGM+ G G+ FTA GTA+T+ VL++ ++
Sbjct: 16 ALVSLGAATFTLVSAYGFSGGDPGRVAANVASGVGFLGAGTITHPKKRV----QGSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDIR 118
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A1E7FEZ8_9STRA (MgtC/SapB transporter (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEZ8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 7.210e-16 Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGFS---RADQARVAASVASGVGFIGAGVITTAG-KGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLK 306
SLV++GAC FT S +GFS R D +R+A++VASGVGFIGAGVITT+ DG+ R S + V GLTTA+ IW++A +G++CG GLL AT T+ +L+
Sbjct: 56 SLVSMGACCFTICSCYGFSNFARVDVSRMASNVASGVGFIGAGVITTSVINKDGQSR--SNPQNNIVHGLTTAATIWLSAAVGVSCGVGLLRIATTAAFATICILR 159
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A7V2KRP3_9CHLR (MgtC/SapB family protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7V2KRP3_9CHLR) HSP 1 Score: 80.5 bits (197), Expect = 3.180e-15 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 4 LVAIGACIFTSVSQFGFSRADQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISR 315
L+ GA +FT VS +GF DQARVAA + +G+GF+GAG I R+S +G V+GLTTA+ IW+TAG+GMA G+G+ A+V T +A+L + R
Sbjct: 33 LICAGAALFTVVSIYGFGVTDQARVAAGIVTGIGFLGAGAII---------RRS----EGGVKGLTTAATIWVTAGIGMAAGSGMYVIASVTTLFVLAILLLPR 123
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A7S2MLU6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLU6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.470e-15 Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGF---------SRADQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISRVQQSVLSK 339
+LV++GAC FT S FGF ++ D +R+A++VASGVGFIGAGVIT K G D V GLTTA+AIW+ A +G+A G GL A A T+A+L+ S+++ + +SK
Sbjct: 73 ALVSLGACAFTLCSMFGFLAVAASSSAAKLDPSRMASNVASGVGFIGAGVITNNRKSSG-----VYDRQSSVNGLTTAAAIWVAAAVGVASGVGLYVVAATAAASTIAILRFSKLKNTAISK 189
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A448Z6J1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6J1_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.130e-15 Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGFS---RADQARVAASVASGVGFIGAGVITTA----GKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISR 315
SLV++GA IFT S +GF+ + D +R+AA+VASGVGF+GAGVITT+ KGD G +++ V GLTTA+ IW++A +G++CG GLL AT A T+ +L++ R
Sbjct: 215 SLVSMGAAIFTVCSCYGFTNFPKVDASRMAANVASGVGFVGAGVITTSIHKPNKGDASGNLYQSNV---VHGLTTAATIWLSAAVGVSCGVGLLRVATTAAAATIFILRMGR 323
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: UPI001E2F04C1 (MgtC/SapB family protein n=1 Tax=Prevotella TaxID=838 RepID=UPI001E2F04C1) HSP 1 Score: 81.3 bits (199), Expect = 6.890e-15 Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 4 LVAIGACIFTSVSQFGFSRA--DQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTAL 288
LVA+G+ +FT +SQ+GFS A D +RVAA V SG+GF+GAG+I VRGLTTA+ +W+TA +GMACGTG+ A V TAL
Sbjct: 33 LVAMGSALFTIISQYGFSEALKDSSRVAAQVVSGIGFLGAGIIIF--------------QKNMVRGLTTAAGLWVTAAIGMACGTGMYLVAAVTTAL 115
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A7S1CXC0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXC0_CYCTE) HSP 1 Score: 79.7 bits (195), Expect = 3.890e-14 Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 1 SLVAIGACIFTSVSQFGF-SRADQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVLKISRV 318
SLV++GA FT S +GF R D +R+A+SVASGVGFIGAGVITT+ K S ++ V GLTTA+AIW++A +G+A G GL A ++TV++L++ R+
Sbjct: 68 SLVSLGAATFTICSMYGFVGRWDTSRMASSVASGVGFIGAGVITTSNK-------YSKNV---VHGLTTAAAIWLSAAVGVASGAGLHIIAVCAASITVSILRLGRI 164
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Match: A0A349CIR8_9CHLR (Magnesium transporter MgtC n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A349CIR8_9CHLR) HSP 1 Score: 77.0 bits (188), Expect = 7.900e-14 Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 4 LVAIGACIFTSVSQFGFSRADQARVAASVASGVGFIGAGVITTAGKGDGRGRQSSTDMDGDVRGLTTASAIWITAGLGMACGTGLLFTATVGTALTVAVL 303
L+ GA +FT VS +GF DQARVAA + +G+GF+GAGVI R+ +++ V+GLTTA+ IWITAG+GMA G+G+ A T + VL
Sbjct: 39 LICSGAALFTVVSAYGFGITDQARVAAGIVTGIGFLGAGVIL---------RRDDSNV---VKGLTTAATIWITAGIGMAAGSGMYILAVATTVMVFLVL 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6336.13914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6336.13914.1 >prot_H-elongata_contig6336.13914.1 ID=prot_H-elongata_contig6336.13914.1|Name=mRNA_H-elongata_contig6336.13914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp SLVAIGACIFTSVSQFGFSRADQARVAASVASGVGFIGAGVITTAGKGDGback to top mRNA from alignment at H-elongata_contig6336:5234..7379+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6336.13914.1 ID=mRNA_H-elongata_contig6336.13914.1|Name=mRNA_H-elongata_contig6336.13914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2146bp|location=Sequence derived from alignment at H-elongata_contig6336:5234..7379+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6336:5234..7379+ >mRNA_H-elongata_contig6336.13914.1 ID=mRNA_H-elongata_contig6336.13914.1|Name=mRNA_H-elongata_contig6336.13914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig6336:5234..7379+ (Himanthalia elongata Himel1 dioecious)back to top |