mRNA_H-elongata_contig63342.13913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63342.13913.1
Unique NamemRNA_H-elongata_contig63342.13913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: D7FXC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC3_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 4.050e-100
Identity = 170/231 (73.59%), Postives = 184/231 (79.65%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNASTIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNMQ 693
            KLGEW+ATAI GNDILSSVLYV+GLVTG A WLSP+CL MVAGIL+LYRFIYGEAISALPMNGGAYNVLIN TSKPVASFAACLA+ISYIATGVVSAATAV                           T+GISESAG AL MFVVHV TLTAVC+ SA YAF+N + +++NLQQ FP V VG + +EGTW TAILFG SSAMLGVSGFESSSQFVEEQ KGVFVKTLRNMQ
Sbjct:  176 KLGEWYATAISGNDILSSVLYVTGLVTGFAGWLSPVCLLMVAGILYLYRFIYGEAISALPMNGGAYNVLINTTSKPVASFAACLAVISYIATGVVSAATAVSYLQTLIPAAGLMTCTIGLLFFFACLMTMGISESAGVALGMFVVHVFTLTAVCVLSACYAFYNVTILKENLQQDFPAVTVGGTVVEGTWVTAILFGVSSAMLGVSGFESSSQFVEEQAKGVFVKTLRNMQ 406          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: A0A836CNH3_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH3_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.670e-80
Identity = 139/213 (65.26%), Postives = 160/213 (75.12%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNASTIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQ 639
            KLGEW ATAICGNDILSSVLYVSGLVT SA WLSP+CL MVAG+L+LYRFIYGEAISALPMNGG+YNVLIN TSK +ASFAACLAIISYIATGVVSAATA+                             GISES+  AL MFV+HV TL A+ + +A YA F  +T  +N+Q+ FPD++VG + ++G W TA+LFGFSSAMLGVSGFESSSQ
Sbjct:   99 KLGEWAATAICGNDILSSVLYVSGLVTSSAGWLSPVCLLMVAGLLYLYRFIYGEAISALPMNGGSYNVLINTTSKAIASFAACLAIISYIATGVVSAATAIAYLRTLWPELDAQLATVALLFFFACLMGYGISESSDVALGMFVLHVATLFALAVGAAAYACFETTTFHENIQRDFPDIIVGGNLVQGNWATALLFGFSSAMLGVSGFESSSQ 311          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: A0A835YT58_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT58_9STRA)

HSP 1 Score: 238 bits (608), Expect = 3.650e-71
Identity = 123/229 (53.71%), Postives = 163/229 (71.18%), Query Frame = 1
Query:    4 LGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNASTIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            LGEW +TAIC NDILSSV+Y SGLV+ +A  L+P+CL +VAG+LHL++ IY EAISALP NGG+YNVL+NATSK VA+ AAC+ ++SY+ TGVVSAA+A+                             G+SESA  A+ +F +HV TLTAVC+ S+VY  FN++T+  N++ G+PDV++    + GT++TA+ FG S+A LGVSGFE+S+QFVEEQ  GVF KTL NM
Sbjct:   77 LGEWMSTAICANDILSSVIYTSGLVSATAGVLAPVCLFIVAGVLHLFKSIYCEAISALPSNGGSYNVLLNATSKSVAALAACVTVLSYVTTGVVSAASAIAYLHVVFPQVHLVYGTVLLLLFFACLTAFGVSESARVAVGIFALHVLTLTAVCLLSSVYVAFNSATLHANIEAGYPDVILAGGRVRGTFWTALFFGVSTAFLGVSGFETSAQFVEEQVAGVFPKTLSNM 305          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: H3GCK0_PHYRM (Uncharacterized protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3GCK0_PHYRM)

HSP 1 Score: 233 bits (593), Expect = 6.070e-69
Identity = 127/231 (54.98%), Postives = 157/231 (67.97%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNA-STIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL EW ATAICGNDILSS LYVSGLV   A  L+P+ LA+VAGIL+LYRFIYGE ++A+P+NGG+YNVL+N TSK +A+ AA LAI+SYIATGVVS  +A                             IGI+ESA  AL++F+ H  TLT +C+ SAVY   +   T+Q N   GFPD+ +    + G + TAI FG S+AMLG+SGFE+SSQFVEEQ +GVF KTLRNM
Sbjct:   78 KLSEWLATAICGNDILSSCLYVSGLVASKAGKLAPVALAIVAGILYLYRFIYGEVLNAVPLNGGSYNVLLNTTSKRLAAMAASLAILSYIATGVVSGTSACNYLASHVPSLEIVPATIGLLFIFAMLSLIGITESAVVALVIFITHAATLTVLCVLSAVYVVKDEFQTLQANFDTGFPDINLAGDIMSGNFLTAIFFGTSTAMLGISGFETSSQFVEEQAEGVFPKTLRNM 308          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: A0A5D6XZE1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZE1_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.990e-68
Identity = 128/231 (55.41%), Postives = 154/231 (66.67%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNASTI-QDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL EW ATAICGNDILSS LYVSGLV   A +L+P+ LA+VAG+L+LYRFIYGE + A+P+NGG+YNVL+N T+K VAS AA LAI+SYIATGVVS  +A                             IGI+ESA  AL +F+ H  TL  +C+ SAV+ F N   I  DN    FPD+ +   T+ G  FTA+ FG S+AMLG+SGFESSSQFVEEQ  GVF KTLRNM
Sbjct:   78 KLSEWLATAICGNDILSSCLYVSGLVASKAGFLAPLALAIVAGVLYLYRFIYGEVVGAIPLNGGSYNVLLNTTTKRVASVAASLAILSYIATGVVSGTSACNYLASQIPGLPIVPATIGLLFFFAVLSLIGITESALLALAIFIAHSITLLVLCVFSAVFVFQNGFAILHDNFATDFPDINLAGDTVGGNLFTALFFGTSTAMLGISGFESSSQFVEEQADGVFPKTLRNM 308          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: A0A1V9YA40_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA40_9STRA)

HSP 1 Score: 230 bits (587), Expect = 4.270e-68
Identity = 132/232 (56.90%), Postives = 160/232 (68.97%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVY-AFFNASTIQDNL-QQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL EW ATAICGNDILSS LYVSGLVT  A  L+P+ LA+VAGIL+LYRFIYGE ++A+PMNGG+YNVL+N TSK VAS AA LAI+SYIATGVVS  +A                            ++GISESA  AL +F++H  TL A+C+AS ++ +  N S + DNL    FPDV V  S + G  FTA+ FG S+AMLG+SGFESSSQFV+EQ  GVF KTL+NM
Sbjct:   77 KLSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPVSLALVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSSTFPALPVVPSSVGLLFFFAVLTSMGISESAMFALGIFILHTLTLIALCVASIIFMSQNNFSILYDNLFHTDFPDVNVAGSWVSGDIFTALFFGTSTAMLGISGFESSSQFVQEQAAGVFPKTLKNM 308          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: A0A6A3ZJ44_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3ZJ44_9STRA)

HSP 1 Score: 230 bits (587), Expect = 7.410e-68
Identity = 127/231 (54.98%), Postives = 156/231 (67.53%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNA-STIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL EW ATAICGNDILSS LYVSGLV   A  L+P+ LA+VAGIL+LYRFIYGE ++A+P+NGG+YNVL+N TSK VA+ AA LAI+SYIATGVVS  +A                             IGI+ESA  AL++FV H  TLT +C+ SAVY + +   T+  N    FPD+ +    + G + TAI FG S+AMLG+SGFE+SSQFVEEQ +GVF KTLRNM
Sbjct:   77 KLSEWLATAICGNDILSSCLYVSGLVASKAGKLAPLALAIVAGILYLYRFIYGEVLNAVPLNGGSYNVLLNTTSKRVAAMAASLAILSYIATGVVSGTSACNYLASHVPSLEIVPATIGLLFIFAALSLIGITESAVVALVIFVAHAATLTVLCVLSAVYVWNDGFQTLHANFSTDFPDINLAGDIMSGNFLTAIFFGTSTAMLGISGFETSSQFVEEQAEGVFPKTLRNM 307          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: K3WJT8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJT8_GLOUD)

HSP 1 Score: 229 bits (585), Expect = 9.470e-68
Identity = 127/231 (54.98%), Postives = 155/231 (67.10%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNASTI-QDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL EW ATAICGNDILSS LYVSG+V   A +L+P+ LA+VAG+L+LYRFIYGE ++A+P+NGG+YNVL+N T+K VAS AA LAI+SYIATGVVS  +A                             IGI+ESA  AL +F+ H  TL  +C+ SA++ F N   I + N    FPD+ +   TI G  FTAI FG S+AMLG+SGFESSSQFVEEQ  GVF KTLRNM
Sbjct:   73 KLSEWLATAICGNDILSSCLYVSGIVASKAGFLAPVALAIVAGVLYLYRFIYGEVVNAIPLNGGSYNVLLNTTTKRVASVAASLAILSYIATGVVSGTSACNYLASQLPTLPIVPATIGLLFFFAVLSLIGITESALVALAIFIAHSITLAVLCVFSAIFVFKNDFEILKANFSTDFPDINLAGDTITGNLFTAIFFGTSTAMLGISGFESSSQFVEEQADGVFPKTLRNM 303          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: K8YV13_NANGC (Amino acid-polyamine-organocation family (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YV13_NANGC)

HSP 1 Score: 221 bits (562), Expect = 2.710e-67
Identity = 118/230 (51.30%), Postives = 158/230 (68.70%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVYAFFNASTIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL +W ATAICGNDI++S  YV GLVT SA  ++P+ L +V+ +L+L RF+Y EAI+ALPMNGG++NVL+N+TSK +AS AA LA++SYIATGVVSA +AV                            +GI ESAG A ++F +H+ TLT +C  S VY   + ST+++N +  +PDV +G     G++ TAI FG++SA+LGVSGFESSSQFV+ Q  GVF+KTLRNM
Sbjct:  109 KLNQWEATAICGNDIMASCFYVVGLVTMSAGKMAPLALLLVSCVLYLIRFLYAEAITALPMNGGSFNVLLNSTSKGIASSAATLALVSYIATGVVSATSAVDYLKKVVSVPNPLLAILGLLFLFAVLVFLGIKESAGVAQVIFWIHILTLTLLCACSMVYVVADPSTLRENFRAPYPDVELGGVIRSGSFATAIFFGYTSAILGVSGFESSSQFVQSQAPGVFLKTLRNM 338          
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Match: A0A1V9YY08_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YY08_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.000e-66
Identity = 128/232 (55.17%), Postives = 158/232 (68.10%), Query Frame = 1
Query:    1 KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRFIYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGISESAGAALIMFVVHVCTLTAVCIASAVY-AFFNASTIQDNL-QQGFPDVMVGDSTIEGTWFTAILFGFSSAMLGVSGFESSSQFVEEQRKGVFVKTLRNM 690
            KL EW ATAICGNDILSS LYVSGLVT  A  L+P+ L +VAGIL+LYRFIYGE ++A+PMNGG+YNVL+N TSK VAS AA LAI+SYIATGVVS  +A                             +GISESA  AL++F++H  TL  +C+ S ++ A  N S + +NL Q  FP+V V  + + G  FTA+ FG S+AMLG+SGFESSSQFV+EQ  GVF KTL+NM
Sbjct:   66 KLSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPLDLVLVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSATVPTLSVVPASIGLLFFFAVLTCMGISESAMVALVIFIIHTLTLVVLCVMSVLFMAKNNFSILYENLFQTDFPEVNVAGTWVSGDVFTALFFGTSTAMLGISGFESSSQFVQEQAPGVFPKTLKNM 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63342.13913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXC3_ECTSI4.050e-10073.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNH3_9STRA1.670e-8065.26Amino acid permease-domain-containing protein n=1 ... [more]
A0A835YT58_9STRA3.650e-7153.71Amino acid permease-domain-containing protein n=1 ... [more]
H3GCK0_PHYRM6.070e-6954.98Uncharacterized protein n=25 Tax=Peronosporaceae T... [more]
A0A5D6XZE1_9STRA2.990e-6855.41Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9YA40_9STRA4.270e-6856.90Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A3ZJ44_9STRA7.410e-6854.98Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
K3WJT8_GLOUD9.470e-6854.98Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
K8YV13_NANGC2.710e-6751.30Amino acid-polyamine-organocation family (Fragment... [more]
A0A1V9YY08_9STRA1.000e-6655.17Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63342contigH-elongata_contig63342:184..3155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.5
Seed ortholog evalue8e-83
Seed eggNOG ortholog2880.D7FXC3
EggNOG free text desc.Amino acid permease
EggNOG OGs28KN3@1,2QT3M@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size693
Cds size693
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931017.2418375-CDS-H-elongata_contig63342:183..2361622931017.2418375-CDS-H-elongata_contig63342:183..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 184..236 +
1691679663.730163-CDS-H-elongata_contig63342:183..2361691679663.730163-CDS-H-elongata_contig63342:183..236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 184..236 +
1622931017.2566044-CDS-H-elongata_contig63342:778..8711622931017.2566044-CDS-H-elongata_contig63342:778..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 779..871 +
1691679663.740539-CDS-H-elongata_contig63342:778..8711691679663.740539-CDS-H-elongata_contig63342:778..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 779..871 +
1622931017.2704275-CDS-H-elongata_contig63342:1123..12921622931017.2704275-CDS-H-elongata_contig63342:1123..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 1124..1292 +
1691679663.7518706-CDS-H-elongata_contig63342:1123..12921691679663.7518706-CDS-H-elongata_contig63342:1123..1292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 1124..1292 +
1622931017.2838292-CDS-H-elongata_contig63342:1659..17351622931017.2838292-CDS-H-elongata_contig63342:1659..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 1660..1735 +
1691679663.7607892-CDS-H-elongata_contig63342:1659..17351691679663.7607892-CDS-H-elongata_contig63342:1659..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 1660..1735 +
1622931017.2951884-CDS-H-elongata_contig63342:2112..22431622931017.2951884-CDS-H-elongata_contig63342:2112..2243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 2113..2243 +
1691679663.7693963-CDS-H-elongata_contig63342:2112..22431691679663.7693963-CDS-H-elongata_contig63342:2112..2243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 2113..2243 +
1622931017.308096-CDS-H-elongata_contig63342:2543..26601622931017.308096-CDS-H-elongata_contig63342:2543..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 2544..2660 +
1691679663.7783115-CDS-H-elongata_contig63342:2543..26601691679663.7783115-CDS-H-elongata_contig63342:2543..2660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 2544..2660 +
1622931017.3209674-CDS-H-elongata_contig63342:3101..31551622931017.3209674-CDS-H-elongata_contig63342:3101..3155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 3102..3155 +
1691679663.7889519-CDS-H-elongata_contig63342:3101..31551691679663.7889519-CDS-H-elongata_contig63342:3101..3155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63342 3102..3155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63342.13913.1prot_H-elongata_contig63342.13913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63342 184..3155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63342.13913.1

>prot_H-elongata_contig63342.13913.1 ID=prot_H-elongata_contig63342.13913.1|Name=mRNA_H-elongata_contig63342.13913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
KLGEWHATAICGNDILSSVLYVSGLVTGSASWLSPICLAMVAGILHLYRF
IYGEAISALPMNGGAYNVLINATSKPVASFAACLAIISYIATGVVSAATA
VSYLQTLVPFAGLMTSTIGLLFIFACLMTIGISESAGAALIMFVVHVCTL
TAVCIASAVYAFFNASTIQDNLQQGFPDVMVGDSTIEGTWFTAILFGFSS
AMLGVSGFESSSQFVEEQRKGVFVKTLRNMQ
back to top

mRNA from alignment at H-elongata_contig63342:184..3155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63342.13913.1 ID=mRNA_H-elongata_contig63342.13913.1|Name=mRNA_H-elongata_contig63342.13913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2972bp|location=Sequence derived from alignment at H-elongata_contig63342:184..3155+ (Himanthalia elongata Himel1 dioecious)
AAGCTCGGAGAGTGGCACGCAACTGCCATTTGCGGAAACGATATCCTCTC TAGGTGAGCGTGAGCGGTCGGCTAGAGTCATTTTTATTGAGGCATGAGGC GAGAAACAGTAACCAATTTTTTCTCGCGCGATTGAGCATTGACAGCGGGC CCTGGGAGGGAGTAAGGCCAAGGGGCGAATAACCTTCTTCAGAATATCGG ACCCCCTCACGCTGCGCTTTCATGCAGATCAGGTGAAGCCCATCGCAAAA CCATAAAAGAATTTTGGTCGCACGTGCGTATGCCTCATATGTCTCTCCCT ATTTGCCTCTTATGTTTATGTCTCTCTCAGGGCTGCCTCCGGTGTAATCA CCGCACGCGCCGTCCGTTTCCCGTAACGTACACATCGCTGTGTGCTCCAC TGGCTTAGCCACCGTGCTTCTGATGTCGAGACCAATGCACGCGCAACTAA ATATATATATTTATACATATATTATTGTCTCTCTGGCCGTTGGCGCTTGA CCACGGACGGCCGCCCTGGATATCGGGGCAGCACTCACCTCGCTTCCGCT CCGCGTGTGTCGTTCCGCGCCCTAACCCACTGATGGTAACGTTAGTGTTC TATACGTCAGCGGGCTCGTTACGGGATCCGCAAGCTGGTTATCCCCTATT TGTCTGGCGATGGTCGCGGGGATCCTACACCTCTACCGGTGAGGCTTAGA GGAACCTTGTACGCGCCCCTCTTGTCCGGCGTTCACAGCGCCCAAAACAT TCGTGCGAGAGAGGTCGGTATACTCGATAAACCGCCTTTGCTTGCTGTGC CCCGCTTTTACCAACATGTATTCATCGTTCACCGCGTCGCTGCGCCACAC AAAACAGAAGCAGTATAATGATTTGTTCGCGGCCCTCAATACCTTCAGCA CAGCAGCTTGAACTTTCACGAATCATGTTGATGGTGGCAGGTTTATCTAT GGTGAGGCGATATCAGCCCTACCGATGAATGGCGGCGCATACAACGTGCT CATCAACGCGACTTCCAAGCCAGTGGCATCCTTCGCCGCCTGCCTAGCGA TAATCTCGTACATCGCCACGGGGGTGGTATCCGCTGCCACGGCCGTATCA TATCTTCAGGTGCTTGGCGCCGAGATTCACGCCTGTTATTTTACCTGCAT CAAAAGGAGGGGCACGACGCCCGTTTTTGTATTGCCTTGGAGGGGTTATG CAAGTTACACGTTGGAGAAAATGCGATCAACAGTGCGCTGCCATTTTTTG AACCCAAAAGGCCGAAGTTGGAAGCTCCAAGAGGAGACCCGCGTCGCGCC TGGCCGCAAACGTTATGCGCGCCACACGTTCCCGTCCCCTCTACCTAGCA GGGACTGGCGTTGCTGTAGCGGATAGCGCCACTCTAACTCGCATATTTTC TTCGTGCCACGTGTCGTCGCTGGTTGTGTTCGTTCCGACGTGCCCCCGCC CGCCCCCCGCCGCCTTCTGGAGCTAGACGCTGGTTCCTTTCGCGGGATTG ATGACGTCCACCATCGGCCTGCTATTCATATTCGCGTGCCTCATGACAAT AGGTGAGAAGCGATACATGCATTCATATAGACACATAGACAGGCAGAAAC AGAGAGCTCCATACCGCTAGAGCCACCAACGAATGTCTATTATACAGACC CATCCCTCGATACTGAAGAAAGAAGAAAAAACTGAACCCTTCACTATGTT GAAACCCTTCGATGTATAGCATTTGGCTCTTTCGGTACGAACGCCTTCTT GATGTTAAAACCCTTCCCCCCCCACCATTCCTCCCTCCAAGTGCTCAAAG TAAATAAGTCCTACAAAAAGGAAGTAGTACCAGCGTCTGCGTTGATCGAG AGCTGAGTTCGGAAAGAGCCGAACGCGCTTGTGTTACGACCCGCCCGCGC TCGTTTTTTTGCGCCGTTCTGTTGGGCAGGAATATCCGAGTCAGCCGGAG CAGCTTTGATTATGTTTGTGGTGCACGTCTGTACCTTGACTGCTGTCTGC ATAGCTTCTGCGGTGTATGCATTCTTCAACGCGTCCACGATCCAGGATAA CTTGCAGCAGGTACACCCATGTCTGCATGTTGTATCTCGTTGCATGGCGA CGGCGTCTGAACTAACTTTGGAATGTGCGTCACCCGTACTGATGCGGCTA AAATATTTTTAGTGGGGTCGGTTGATCTCCGCGTCCCTCGCTCCTTATCG CCCACACCGCTGTGACGCTGAGAGCGTCAGCAAGCAACACCCATCCCGGG GAAAGTAGAGACGTACAAGGGATGTGGCGTTTCTGCGCTGACCCTTGACG TGTCCGATGGCACCTCCCGCCGTTGGACACTGGACAAACCCTCGTTATGT CATCTTTCAGGGGTTTCCAGACGTGATGGTTGGAGACAGCACGATCGAGG GGACCTGGTTCACGGCGATCTTGTTCGGGTTTTCGAGCGCCATGCTTGGC GTATCCGGCTTCGAATCATCCTCACAGGTGACGTCAAGACGGCCAGGAAA AAATTATCGCGTGTTCCTACTCGATATTGAATAGTCGTGATTCAGCCGCA ATGTCGCCAACGGTTACATCCGCCCAACCGACGTTCGTTGCCCTTGAAAA TAGAAGAAATTTCCTCGGGAAGGCGTTCGTTATGTGACGTATTTTTCCGC GCGTGTAGTGAAACCGCGCGTGCGAAGCGCGCGAATTGGTTAGTTGTTCG GGTCGAGGATGAGGTTGTAGCTTTCAAGGTGGCAAGGCCCTACAATAGCT GCATGGCGGGCTGGCGCGCAAGTTTTGGATTTTCGTTATTTGTAGGTCAG GTCAAAATCATTGGACGCGATATCGTATCAATGCAGTACCGTTTAATTCA TATCGTTTGATCATCTCGGTGGCTTTCGGCCCTTTGTGCTGTGCTGTGCT GTGCTGTGATGTGTCCAGTTCGTGGAGGAGCAAAGAAAAGGAGTTTTCGT CAAAACCCTTCGGAACATGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig63342:184..3155+

>mRNA_H-elongata_contig63342.13913.1 ID=mRNA_H-elongata_contig63342.13913.1|Name=mRNA_H-elongata_contig63342.13913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig63342:184..3155+ (Himanthalia elongata Himel1 dioecious)
AAGCTCGGAGAGTGGCACGCAACTGCCATTTGCGGAAACGATATCCTCTC
TAGAAGCTCGGAGAGTGGCACGCAACTGCCATTTGCGGAAACGATATCCT
CTCTAGTGTTCTATACGTCAGCGGGCTCGTTACGGGATCCGCAAGCTGGT
TATCCCCTATTTGTCTGGCGATGGTCGCGGGGATCCTACACCTCTACCGT
GTTCTATACGTCAGCGGGCTCGTTACGGGATCCGCAAGCTGGTTATCCCC
TATTTGTCTGGCGATGGTCGCGGGGATCCTACACCTCTACCGGTTTATCT
ATGGTGAGGCGATATCAGCCCTACCGATGAATGGCGGCGCATACAACGTG
CTCATCAACGCGACTTCCAAGCCAGTGGCATCCTTCGCCGCCTGCCTAGC
GATAATCTCGTACATCGCCACGGGGGTGGTATCCGCTGCCACGGCCGTAT
CATATCTTCAGGTTTATCTATGGTGAGGCGATATCAGCCCTACCGATGAA
TGGCGGCGCATACAACGTGCTCATCAACGCGACTTCCAAGCCAGTGGCAT
CCTTCGCCGCCTGCCTAGCGATAATCTCGTACATCGCCACGGGGGTGGTA
TCCGCTGCCACGGCCGTATCATATCTTCAGACGCTGGTTCCTTTCGCGGG
ATTGATGACGTCCACCATCGGCCTGCTATTCATATTCGCGTGCCTCATGA
CAATAGACGCTGGTTCCTTTCGCGGGATTGATGACGTCCACCATCGGCCT
GCTATTCATATTCGCGTGCCTCATGACAATAGGAATATCCGAGTCAGCCG
GAGCAGCTTTGATTATGTTTGTGGTGCACGTCTGTACCTTGACTGCTGTC
TGCATAGCTTCTGCGGTGTATGCATTCTTCAACGCGTCCACGATCCAGGA
TAACTTGCAGCAGGAATATCCGAGTCAGCCGGAGCAGCTTTGATTATGTT
TGTGGTGCACGTCTGTACCTTGACTGCTGTCTGCATAGCTTCTGCGGTGT
ATGCATTCTTCAACGCGTCCACGATCCAGGATAACTTGCAGCAGGGGTTT
CCAGACGTGATGGTTGGAGACAGCACGATCGAGGGGACCTGGTTCACGGC
GATCTTGTTCGGGTTTTCGAGCGCCATGCTTGGCGTATCCGGCTTCGAAT
CATCCTCACAGGGGTTTCCAGACGTGATGGTTGGAGACAGCACGATCGAG
GGGACCTGGTTCACGGCGATCTTGTTCGGGTTTTCGAGCGCCATGCTTGG
CGTATCCGGCTTCGAATCATCCTCACAGTTCGTGGAGGAGCAAAGAAAAG
GAGTTTTCGTCAAAACCCTTCGGAACATGCAGTTCGTGGAGGAGCAAAGA
AAAGGAGTTTTCGTCAAAACCCTTCGGAACATGCAG
back to top