mRNA_H-elongata_contig63329.13909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63329.13909.1
Unique NamemRNA_H-elongata_contig63329.13909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63329.13909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63329contigH-elongata_contig63329:1897..2409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size514
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.7187235-UTR-H-elongata_contig63329:1896..19771622931016.7187235-UTR-H-elongata_contig63329:1896..1977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63329 1897..1977 +
1691679663.5026307-UTR-H-elongata_contig63329:1896..19771691679663.5026307-UTR-H-elongata_contig63329:1896..1977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63329 1897..1977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.733811-CDS-H-elongata_contig63329:1977..24091622931016.733811-CDS-H-elongata_contig63329:1977..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63329 1978..2409 +
1691679663.5126023-CDS-H-elongata_contig63329:1977..24091691679663.5126023-CDS-H-elongata_contig63329:1977..2409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63329 1978..2409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63329.13909.1prot_H-elongata_contig63329.13909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63329 1978..2409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63329.13909.1

>prot_H-elongata_contig63329.13909.1 ID=prot_H-elongata_contig63329.13909.1|Name=mRNA_H-elongata_contig63329.13909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MFRLTSWTGILLASSSLTNFTPTNAFVPPLLKLPLRLLGHHDSARLVFSH
ISRIRYDTTLPLAGSTSENSDDFGSSKNNNAEDDMALTSLLLPPEDDTYD
SPFAALREWRSTPRPQDGSARYDKFGKTTGGIWRSKLLGVFPVT
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mRNA from alignment at H-elongata_contig63329:1897..2409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63329.13909.1 ID=mRNA_H-elongata_contig63329.13909.1|Name=mRNA_H-elongata_contig63329.13909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig63329:1897..2409+ (Himanthalia elongata Himel1 dioecious)
GTTGCAGCCTGGGGCCATCACTAAGCCTGCTCCACGGCACAGTGGAGGTG
TGGCGGATAACTTAAAATTTTATTTATCACCATGTTCAGGTTGACGTCGT
GGACAGGGATTCTCCTTGCAAGCTCTAGCTTGACAAATTTTACGCCAACA
AACGCGTTTGTCCCCCCTCTGCTCAAGCTTCCTCTTCGTCTGCTCGGGCA
CCATGACAGCGCGCGTCTGGTCTTTAGCCACATCAGCCGTATTAGGTACG
ACACTACGCTTCCTTTGGCTGGGAGTACTTCCGAAAACAGCGATGACTTC
GGTAGTAGCAAGAACAATAATGCTGAGGATGACATGGCTCTAACTTCGCT
TCTGCTTCCACCGGAAGACGACACCTACGATAGCCCCTTCGCTGCTTTAC
GCGAGTGGCGATCCACCCCACGCCCTCAAGACGGGTCGGCTCGCTATGAC
AAGTTTGGAAAGACCACAGGCGGAATCTGGAGGTCGAAGCTATTGGGAGT
GTTCCCCGTCACG
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Coding sequence (CDS) from alignment at H-elongata_contig63329:1897..2409+

>mRNA_H-elongata_contig63329.13909.1 ID=mRNA_H-elongata_contig63329.13909.1|Name=mRNA_H-elongata_contig63329.13909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig63329:1897..2409+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAGGTTGACGTCGTGGACAGGGATTCTCCTTGCAAGCTCTAGCTT
GACAAATTTTACGCCAACAAACGCGTTTGTCCCCCCTCTGCTCAAGCTTC
CTCTTCGTCTGCTCGGGCACCATGACAGCGCGCGTCTGGTCTTTAGCCAC
ATCAGCCGTATTAGGTACGACACTACGCTTCCTTTGGCTGGGAGTACTTC
CGAAAACAGCGATGACTTCGGTAGTAGCAAGAACAATAATGCTGAGGATG
ACATGGCTCTAACTTCGCTTCTGCTTCCACCGGAAGACGACACCTACGAT
AGCCCCTTCGCTGCTTTACGCGAGTGGCGATCCACCCCACGCCCTCAAGA
CGGGTCGGCTCGCTATGACAAGTTTGGAAAGACCACAGGCGGAATCTGGA
GGTCGAAGCTATTGGGAGTGTTCCCCGTCACGATGTTCAGGTTGACGTCG
TGGACAGGGATTCTCCTTGCAAGCTCTAGCTTGACAAATTTTACGCCAAC
AAACGCGTTTGTCCCCCCTCTGCTCAAGCTTCCTCTTCGTCTGCTCGGGC
ACCATGACAGCGCGCGTCTGGTCTTTAGCCACATCAGCCGTATTAGGTAC
GACACTACGCTTCCTTTGGCTGGGAGTACTTCCGAAAACAGCGATGACTT
CGGTAGTAGCAAGAACAATAATGCTGAGGATGACATGGCTCTAACTTCGC
TTCTGCTTCCACCGGAAGACGACACCTACGATAGCCCCTTCGCTGCTTTA
CGCGAGTGGCGATCCACCCCACGCCCTCAAGACGGGTCGGCTCGCTATGA
CAAGTTTGGAAAGACCACAGGCGGAATCTGGAGGTCGAAGCTATTGGGAG
TGTTCCCCGTCACG
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