mRNA_H-elongata_contig63314.13907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63314.13907.1
Unique NamemRNA_H-elongata_contig63314.13907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: D7G0Y5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Y5_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.590e-36
Identity = 64/76 (84.21%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            HMKEGLLSMVRN D QGDSRFFISIKDDAGWAD+RYVAFGR+AEGMDV+H IE+VKVEGGTN+PKKPVV++ CG+L
Sbjct:  189 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A835YNC6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.940e-22
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1 
Query:  463 GPALVVV*HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            GP    V H  EG++SMVR  D + DSRFFI+IK DAGWAD RYVAFGRV EG+D +  I+++KV+  +NRP KPVV++ C +L
Sbjct:  101 GPENFEVRHGAEGMVSMVRGPDTKNDSRFFITIKPDAGWADGRYVAFGRVLEGLDALRGIDQLKVQTPSNRPLKPVVIEECVML 184
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A6V1WNP3_HETAK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WNP3_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 1.820e-17
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:  463 GPALVVV*HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            GP    + H   GL+SM R  D + DSRFFI  + DAGWAD +YVAFG+V EG  V+ +IEK+K +   N P K VV+++CG+L
Sbjct:  148 GPENFNIPHTDAGLVSMARGLDGKTDSRFFIQTQGDAGWADGKYVAFGKVTEGFTVVQEIEKLKTQPPQNNPTKKVVIEDCGVL 231
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A6V2NXR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXR4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.870e-17
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H K+GL+SMVR+     DSRFFI+  DDAGWAD++Y AFG V +GMD + +IEKV V    N PK PV +  CG+L
Sbjct:  155 HTKKGLVSMVRSLSGGVDSRFFINCNDDAGWADDKYAAFGIVEDGMDYVKKIEKVSVSPPKNSPKTPVTIIGCGVL 230
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A7S4MQY5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQY5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.400e-17
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H K GL+SMV+++    DSRFFI+IKDDAGWAD+RY AFG V EGMD++ +IEKV V    N PK  + +   GLL
Sbjct:  204 HTKAGLVSMVKDKSGGADSRFFITIKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVSRPKNTPKVAISIQRSGLL 279
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A7R9W6P2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6P2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.500e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H K GL+SMVR++    DSRFFI++KDDAGWAD+RY AFG V EGMD++ +IEKV V    N PK  V +   G +
Sbjct:  111 HTKAGLVSMVRDKTGGVDSRFFINLKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVARPKNTPKVAVRITGSGFV 186
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A5J4Z0I4_PORPP (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0I4_PORPP)

HSP 1 Score: 83.2 bits (204), Expect = 2.120e-15
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H   GL+SM    D + DSRF I  K D+G+ D RY+AFGRV EGM VI+ +E++   G  NRPK+PV + +CGLL
Sbjct:   86 HSVAGLISMCHARDGKADSRFLIQTKADSGYLDGRYIAFGRVLEGMSVIYHMEEIGGVGPQNRPKQPVTIVDCGLL 161
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: A0A4D9CTD0_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTD0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 8.650e-15
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H  EG+LSMV ++    DSRFFI++  D  WAD RYVAFGRV +G++V+ ++EKV+V+  +N P  P+ +   G+L
Sbjct:   32 HSLEGMLSMVNDKSGMVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 107
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BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: B8C839_THAPS (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C839_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 1.890e-14
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAE-----GMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H  +GL+S VRN +   DSRFFI  +DDAGWAD+RY AFG V E     GM+++ ++ +++V+   N PK PV++  CGLL
Sbjct:   98 HRTKGLVSAVRNANGTIDSRFFIQTEDDAGWADDRYAAFGIVLEEEGTGGMELVKKLSRLEVKAPQNSPKDPVLIVGCGLL 178
[Close]
BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Match: K8YUC4_NANGC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUC4_NANGC)

HSP 1 Score: 79.0 bits (193), Expect = 2.030e-13
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  487 HMKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQIEKVKVEGGTNRPKKPVVVDNCGLL 714
            H  EG+LSMV ++    DSRFFI++  D  WAD RYVAFGRV +G++V+ ++EKV+V+  +N P  P+ +   G+L
Sbjct:  159 HSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63314.13907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y5_ECTSI2.590e-3684.21Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835YNC6_9STRA3.940e-2257.14Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A6V1WNP3_HETAK1.820e-1750.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hetero... [more]
A0A6V2NXR4_9STRA6.870e-1755.26Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylu... [more]
A0A7S4MQY5_9STRA8.400e-1756.58Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odonte... [more]
A0A7R9W6P2_9STRA6.500e-1655.26Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudi... [more]
A0A5J4Z0I4_PORPP2.120e-1551.32Peptidyl-prolyl cis-trans isomerase n=1 Tax=Porphy... [more]
A0A4D9CTD0_9STRA8.650e-1547.37PPIase cyclophilin-type domain-containing protein ... [more]
B8C839_THAPS1.890e-1448.15Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
K8YUC4_NANGC2.030e-1347.37Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63314contigH-elongata_contig63314:959..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue6.8e-31
Seed eggNOG ortholog2880.D7G0Y5
KEGG koko:K01262,ko:K03768
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0880@2759
EC3.4.11.9,5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-23_001830.1
Exons3
Model size1016
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63314.13907.1prot_H-elongata_contig63314.13907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63314 1465..2397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.5067358-UTR-H-elongata_contig63314:958..12411622931016.5067358-UTR-H-elongata_contig63314:958..1241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63314 959..1241 +
1691679663.4206927-UTR-H-elongata_contig63314:958..12411691679663.4206927-UTR-H-elongata_contig63314:958..1241Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63314 959..1241 +
1622931016.5215158-UTR-H-elongata_contig63314:1258..14641622931016.5215158-UTR-H-elongata_contig63314:1258..1464Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63314 1259..1464 +
1691679663.4302952-UTR-H-elongata_contig63314:1258..14641691679663.4302952-UTR-H-elongata_contig63314:1258..1464Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63314 1259..1464 +
1622931016.5833166-UTR-H-elongata_contig63314:2397..26961622931016.5833166-UTR-H-elongata_contig63314:2397..2696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63314 2398..2696 +
1691679663.4554949-UTR-H-elongata_contig63314:2397..26961691679663.4554949-UTR-H-elongata_contig63314:2397..2696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63314 2398..2696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.5468001-CDS-H-elongata_contig63314:1464..15201622931016.5468001-CDS-H-elongata_contig63314:1464..1520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63314 1465..1520 +
1691679663.4383433-CDS-H-elongata_contig63314:1464..15201691679663.4383433-CDS-H-elongata_contig63314:1464..1520Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63314 1465..1520 +
1622931016.5654902-CDS-H-elongata_contig63314:2225..23971622931016.5654902-CDS-H-elongata_contig63314:2225..2397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63314 2226..2397 +
1691679663.4465094-CDS-H-elongata_contig63314:2225..23971691679663.4465094-CDS-H-elongata_contig63314:2225..2397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63314 2226..2397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63314.13907.1

>prot_H-elongata_contig63314.13907.1 ID=prot_H-elongata_contig63314.13907.1|Name=mRNA_H-elongata_contig63314.13907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MKEGLLSMVRNEDKQGDSRFFISIKDDAGWADNRYVAFGRVAEGMDVIHQ
IEKVKVEGGTNRPKKPVVVDNCGLL*
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mRNA from alignment at H-elongata_contig63314:959..2696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63314.13907.1 ID=mRNA_H-elongata_contig63314.13907.1|Name=mRNA_H-elongata_contig63314.13907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1738bp|location=Sequence derived from alignment at H-elongata_contig63314:959..2696+ (Himanthalia elongata Himel1 dioecious)
CGTTAAGGTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGCTGAAGTAGA
GCAATAATCGAGAGCATATATATGGTAAGGCTACTCTTGGTCTCTTGACC
AAGTCCAGTAAAAACATGCCCTGCTCTCATCGTACAAAGAAGACAGGGCG
ATCCGCATGTTACCCTAGCCCTAATTATAACCGGCGCCAAGCTTGAGAAA
AAGGGAGATAGAGCCGTGCGGTAGCCGGTCGAATGTTGGTTATTCGAGAT
AAGGGTTAAAGCACCATTTATGTTGTCCATAGTTGTGTTTTGTGTTCCGG
AACCCCTAAGAAAGCCCCATTTGGTGATCGTTTTGCTGATCGTTGAAGCC
TTGTACTCCGACCTGTTCGCGCTCGTCCGACGTCGCGGTTTTGTCAATTG
TCGTTTGTCATTTGTGAAATGTTATTTGTCGTTTGTATATTGTAATTTGT
CATCTGTAAAAATTTCCCCGTCCACTCGTGGTCCTGCTCTTGTTGTGGTG
TAGCACATGAAGGAGGGGTTGTTAAGCATGGTACGGAACGAGGATAAGCA
AGGGGATAGCCGGTGAGTCGTTGGGACTAGCGCACTATAATAATAGTCGT
AAGATACAAAGCCTACTAGTATAATAATAGTCAATAATAGCCAATCGAGA
CTTTTCCGCGCGCTTAGTTAGTACTGTACCCTAACTGGGGCAGTATGAAG
GTTAGGGTTAGGGTATTAGCTATAATACTTACAGGGTTAGGGTTAGGGTT
AGGGTAATAGCTGTCGGGAATCCTGGGAAATAAGATCGAATGCGGTTCGC
CAATTGTTTTCACTCAAGACGGTGGACGATTATTTTATTGGACCAACCCT
AATACTAACCCTAACCCACGCTTTCTGATCATCTTCTTCCGTGTCTCCCT
AACCCAATCGCCCGCGCGATCGTTTCCAAGGGAATATCTTTAGACTATTA
ATAGTTGAGTAAGTCGCGACTATTATTAGTGGTATAGACTGGTGTCCATT
ATACCATGCTATTCCCTTACAGACACCGGATGTGGCCTCTTGAGGCGTCT
TGAAGAGTCTACAGGGTTGGGTTGGCTTGTGTAGTACTATAATATAGTAT
AATGCTCAAGTACTTCCGTGCGGTGTACCAGTATACTGCTACTTTGCACG
AGGGAAATTGTAGCGTTATGTTCCGACGTCTTCTACCCCTGACCTAACCC
TAACCGTTACCAAGATGCCGTATGAAACAGTGATGCTGTGATACGCTTTG
CTTGTGTTTTGTGATAGGTTCTTCATCTCGATCAAGGATGACGCCGGTTG
GGCGGACAATCGATATGTGGCCTTCGGGCGGGTGGCGGAGGGCATGGACG
TCATCCACCAAATAGAGAAAGTGAAGGTGGAAGGCGGCACCAATCGTCCC
AAGAAACCCGTGGTCGTAGATAACTGCGGCTTGCTTTGAATCACAACAGC
GTATTCCATGTATCCAGTTTTAAAAGATCAAGTGGTTTTATGTTTCATTG
TGCGGGTCAGGCAACCATAATAGCTAGTATAATAGGTAGTATAATAGTAT
ATTATAATGATATAGGCTCTATACGCTATAGAGCAGACGATAGATGTTGT
GGTGTGTTACGGGATAGTGGAATGGGATGGGATGGGACAGGGGGGCAGGG
GTTAGAGGTCGTGACAAGGTGTCTGATGGGATAAGGTGAGGAACGGTGTA
ACGGGATGGCACAATTCCTCACCAACACCTACACCTGT
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Coding sequence (CDS) from alignment at H-elongata_contig63314:959..2696+

>mRNA_H-elongata_contig63314.13907.1 ID=mRNA_H-elongata_contig63314.13907.1|Name=mRNA_H-elongata_contig63314.13907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig63314:959..2696+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGGGGTTGTTAAGCATGGTACGGAACGAGGATAAGCAAGGGGA
TAGCCGATGAAGGAGGGGTTGTTAAGCATGGTACGGAACGAGGATAAGCA
AGGGGATAGCCGGTTCTTCATCTCGATCAAGGATGACGCCGGTTGGGCGG
ACAATCGATATGTGGCCTTCGGGCGGGTGGCGGAGGGCATGGACGTCATC
CACCAAATAGAGAAAGTGAAGGTGGAAGGCGGCACCAATCGTCCCAAGAA
ACCCGTGGTCGTAGATAACTGCGGCTTGCTTTGAGTTCTTCATCTCGATC
AAGGATGACGCCGGTTGGGCGGACAATCGATATGTGGCCTTCGGGCGGGT
GGCGGAGGGCATGGACGTCATCCACCAAATAGAGAAAGTGAAGGTGGAAG
GCGGCACCAATCGTCCCAAGAAACCCGTGGTCGTAGATAACTGCGGCTTG
CTTTGA
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