mRNA_H-elongata_contig63299.13906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63299.13906.1
Unique NamemRNA_H-elongata_contig63299.13906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig63299.13906.1 vs. uniprot
Match: D7FKA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.470e-7
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:   47 QCADLERELDERTKALSTYRGEKTQELMAAMTRTTVATQRADAAXXXXXXXXXXXDSLQAR 229
            Q ADLERELDERTKAL+ YRGEK+QELMAA+ + TV  ++++             DSL+ R
Sbjct:  108 QAADLERELDERTKALAAYRGEKSQELMAALQKATVMEKKSEDEARKSGEATRAADSLRTR 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63299.13906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKA5_ECTSI1.470e-752.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63299contigH-elongata_contig63299:981..3306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size339
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63299.13906.1prot_H-elongata_contig63299.13906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63299 981..3306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.419916-CDS-H-elongata_contig63299:980..10921622931016.419916-CDS-H-elongata_contig63299:980..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63299 981..1092 +
1691679663.38404-CDS-H-elongata_contig63299:980..10921691679663.38404-CDS-H-elongata_contig63299:980..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63299 981..1092 +
1622931016.4368985-CDS-H-elongata_contig63299:1851..19671622931016.4368985-CDS-H-elongata_contig63299:1851..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63299 1852..1967 +
1691679663.398462-CDS-H-elongata_contig63299:1851..19671691679663.398462-CDS-H-elongata_contig63299:1851..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63299 1852..1967 +
1622931016.459694-CDS-H-elongata_contig63299:3195..33061622931016.459694-CDS-H-elongata_contig63299:3195..3306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63299 3196..3306 +
1691679663.4111824-CDS-H-elongata_contig63299:3195..33061691679663.4111824-CDS-H-elongata_contig63299:3195..3306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63299 3196..3306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63299.13906.1

>prot_H-elongata_contig63299.13906.1 ID=prot_H-elongata_contig63299.13906.1|Name=mRNA_H-elongata_contig63299.13906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
ARGGVRQPTRFQSAESVRRPREGVGRAHEGVVDLQGRENPRADGGHDPDY
RGNAAGGCCGSKSDCHPKDCRQPAGQAGSRGERAERGAEAERRRKGRAGE
AAGSADGGLVPQ*
back to top

mRNA from alignment at H-elongata_contig63299:981..3306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63299.13906.1 ID=mRNA_H-elongata_contig63299.13906.1|Name=mRNA_H-elongata_contig63299.13906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2326bp|location=Sequence derived from alignment at H-elongata_contig63299:981..3306+ (Himanthalia elongata Himel1 dioecious)
GCGAGAGGTGGCGTCCGTCAACCGACGCGCTTCCAGTCTGCAGAATCAGT
GCGCAGACCTAGAGAGGGAGTTGGACGAGCGCACGAAGGCGTTGTCGACC
TACAGGGGCGAGGTTCGTTTTTTAGTAGAAACTACATGCGGTAAGGGATT
GTGGAACCTTTCTTAGATTTAATATAGTATTTAATATAGTGAAATAAGGA
GGCGGGAAGGATAAAAGGGGGAGAGGGTACAAGCCGCTTCACGACTTTCA
GGTGGGGTGTTTCGTGAATAAAGTAAAATACATTCCTAATCACAAGTAAT
TCACTCTCTAGGCTTTGGGTTGGTGTCCCCATATGATGCATGACCCGACA
AACGTACTACCGGGCAACACGATCTATCACATAAAGATTTTGTGCCCAAA
GATAGTTATAATATTATTGTACACATTCGAACCTGACGATAGTTGGTCCC
CTGGACTGCTACACCTCTCACGGGGCTAAGAAGGCGTGGATGTTCCGAGG
GTTGGAATGAGTTCTTACTGACTGCACAAACGACGACGTGTAAATTAAGT
ATCATACATGAGAAAGATTGTTACAATAGACTCTAGTAATAGTAGTAATT
TTATCACGCCCTAGATAATTATCCTGCTCATTATCCGCTCTAGAAAATAT
TCACAAAGCGCTTATGTACAGTAGTACTGTATTAAAAATATTTTTATCTG
GATAATATTATTCGTAAAAAACATATGAACTATTCAAGCAAATTTTATAT
ATAGCCACCGAAGAAGTAGGGAAAGCTACGAAGTTGGGTGTCCTAAACCA
CCAGTTTTGTTTTTCCGTGCCTATGACGACTGCTATGGCGACTGCTATGG
CGACTGCTACGTGACGGTCAGAAAACCCAAGAGCTGATGGCGGCCATGAC
CCGGACTACCGTGGCAACGCAGCGGGCGGATGCTGCGGAAGCAAAAGCGA
CTGCCATCCAAAGGACTGTCGACAGCCTGCAGGCCAGGTACACCCGCGGC
GTATATGTATATATATATATATATATATAATGTGTGTTGTCATCCTCTTA
TTCTAGACGCCAGACTCGTGGACGCACCAACCGGGGTCACACTGGAGCAA
GGTCACGCTGAATTTCTCCATCTTCCTTCTGCGGTGGTTGCCTTAATTTT
TGATCGCGAGAACGATTTAGTCGTCCTTTCCCTCGTCACCGCAAAATAAT
CGTTGTTCATTTGTTGGGGCATGATGTGAGAGAAAATTCCAGTTAGTTCG
TGTAACAGCGCCGAGATTCGAGCTCACGTCCCAAAGTCAGAAGGTTTTAA
GGCTATTTTCTTGTTTTGTGACGTAGCTGAACCTTACCATTATTCTCATC
CGCGCCATTTTGCCGTCTTTCCGCTATAATATAGGGTTTCCACGTGTCAT
AAAAAGTGTACGAAAAGAATGCACTAAACTGAATAAGAACCTAAACTAGT
CTGCCAGTGGCGGAACCAGTTCTGCTACTTTTCCACTTCGGCTCACTTTT
TGGGGCACTTTTTGTAACACGTGGAAACCCTATAATATAGGGTTCCCACG
TGTCACAAACAATGCACGAAAAACATGCACTTAAGTGAACGGGAACCTAA
ACTAGTCCCCCACTGGCAGACTAGTTTAGGTTTCTCTCACTTTAGTGCAT
GTTTTTCGTGCATTGTTTGTAACACGTGGAAACCCTATAATAATAGCTAT
TAATAAGTGTTCTGAAATGTAGGCAAGGATTTTGTCGTGAAAAAGGAAAA
AGCGTTTTTTTCTTCTTTAGTTGACATAATGTTCTCCGTCTCCCGAAAAA
AGCGAAGACGTTGTCATACCAAATAGTTCTCCAGTTTGTACTGCATTACT
TAGGTTGGGCTATGATGAGCTAGAACCAAATCAGATAGTTTATCTTTTTC
ATTGCGGCCGTCTGGGTTTCCATAAATAAATGGGAAATAAGGATTAGGAA
AAATGCCTCTGATATTTTTGGATCTCGTCTACCGGTAAGTACTCTGTTAT
TTTATACCTACCACTAAGGTCACGAAGGATTTTGTTGGACACTCCTGTGG
AAAAATTAAGATTTGTTACCAGCCGCCGATGCTGCCGCAGTTGTAAAGTT
GGCCGCACATATTTACTTCGATTTTTATATATAAGGGCATTTGTGTGTGT
GTGTGTGTGTGTGTTATCGTGACGGCCTACGGCGGGGGATCGGCTTTTGG
TCCGACGCAATCAAGGCTGGTTCGCGTGGAGAGCGAGCTGAACGCGGTGC
TGAGGCAGAGCGCCGCCGAAAAGGCCGGGCTGGAGAGGCAGCTGGCTCTG
CAGACGGTGGGTTGGTGCCCCAATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig63299:981..3306+

>mRNA_H-elongata_contig63299.13906.1 ID=mRNA_H-elongata_contig63299.13906.1|Name=mRNA_H-elongata_contig63299.13906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig63299:981..3306+ (Himanthalia elongata Himel1 dioecious)
GCGAGAGGTGGCGTCCGTCAACCGACGCGCTTCCAGTCTGCAGAATCAGT
GCGCAGACCTAGAGAGGGAGTTGGACGAGCGCACGAAGGCGTTGTCGACC
TACAGGGGCGAGGCGAGAGGTGGCGTCCGTCAACCGACGCGCTTCCAGTC
TGCAGAATCAGTGCGCAGACCTAGAGAGGGAGTTGGACGAGCGCACGAAG
GCGTTGTCGACCTACAGGGGCGAGAAAACCCAAGAGCTGATGGCGGCCAT
GACCCGGACTACCGTGGCAACGCAGCGGGCGGATGCTGCGGAAGCAAAAG
CGACTGCCATCCAAAGGACTGTCGACAGCCTGCAGGCCAGAAAACCCAAG
AGCTGATGGCGGCCATGACCCGGACTACCGTGGCAACGCAGCGGGCGGAT
GCTGCGGAAGCAAAAGCGACTGCCATCCAAAGGACTGTCGACAGCCTGCA
GGCCAGGCTGGTTCGCGTGGAGAGCGAGCTGAACGCGGTGCTGAGGCAGA
GCGCCGCCGAAAAGGCCGGGCTGGAGAGGCAGCTGGCTCTGCAGACGGTG
GGTTGGTGCCCCAATAAGCTGGTTCGCGTGGAGAGCGAGCTGAACGCGGT
GCTGAGGCAGAGCGCCGCCGAAAAGGCCGGGCTGGAGAGGCAGCTGGCTC
TGCAGACGGTGGGTTGGTGCCCCAATAA
back to top