mRNA_H-elongata_contig63272.13904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63272.13904.1
Unique NamemRNA_H-elongata_contig63272.13904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63272.13904.1 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.920e-9
Identity = 49/158 (31.01%), Postives = 68/158 (43.04%), Query Frame = 1 
Query:   73 EECAELSEGTSQFPDSIETPNIFRRNDLCRWLMKLNVGLAYCFHKDMLRKGVNEDIDPHPSLYDH------PDRPDGGSRVWIEERGWGRN---CMEPNVVLGDNPSSSWPSMGQ--------MLLEGEARTEEPPLPGEMSRRFAANAMREFNTFEH 495
            EE  + + GT +     + P +  + DLCRWL+K ++ L  CF  DML KG   D       Y        P   DGG     ++ G  RN     +P+VV  +    S P  G           L    ++ EPP PGEMS +FAA  + E +   H
Sbjct:  227 EEYIKAASGTFESCTMAKEPRLIHQKDLCRWLLKADIRLTACFSVDMLDKGAFNDGSRGVGRYARWEGDRCPPGEDGGGP---QDVGATRNPGLSAQPHVVYDEGKGGSSPMTGAGAASTPTCFSLRSFDQSTEPPPPGEMSLKFAAELLPECDLMVH 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63272.13904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P2_9PHAE8.920e-931.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63272contigH-elongata_contig63272:925..2280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size755
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63272.13904.1prot_H-elongata_contig63272.13904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63272 1170..2280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.2571926-UTR-H-elongata_contig63272:924..11691622931016.2571926-UTR-H-elongata_contig63272:924..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63272 925..1169 -
1691679663.3290296-UTR-H-elongata_contig63272:924..11691691679663.3290296-UTR-H-elongata_contig63272:924..1169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig63272 925..1169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.2795274-CDS-H-elongata_contig63272:1169..15531622931016.2795274-CDS-H-elongata_contig63272:1169..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63272 1170..1553 -
1691679663.3398914-CDS-H-elongata_contig63272:1169..15531691679663.3398914-CDS-H-elongata_contig63272:1169..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63272 1170..1553 -
1622931016.298-CDS-H-elongata_contig63272:2154..22801622931016.298-CDS-H-elongata_contig63272:2154..2280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63272 2155..2280 -
1691679663.3477633-CDS-H-elongata_contig63272:2154..22801691679663.3477633-CDS-H-elongata_contig63272:2154..2280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63272 2155..2280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63272.13904.1

>prot_H-elongata_contig63272.13904.1 ID=prot_H-elongata_contig63272.13904.1|Name=mRNA_H-elongata_contig63272.13904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MYMRATETFWMNPSLFDEKYSELREECAELSEGTSQFPDSIETPNIFRRN
DLCRWLMKLNVGLAYCFHKDMLRKGVNEDIDPHPSLYDHPDRPDGGSRVW
IEERGWGRNCMEPNVVLGDNPSSSWPSMGQMLLEGEARTEEPPLPGEMSR
RFAANAMREFNTFEHIASM*
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mRNA from alignment at H-elongata_contig63272:925..2280-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63272.13904.1 ID=mRNA_H-elongata_contig63272.13904.1|Name=mRNA_H-elongata_contig63272.13904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-elongata_contig63272:925..2280- (Himanthalia elongata Himel1 dioecious)
ATGTACATGCGGGCGACTGAAACCTTCTGGATGAATCCATCACTTTTCGA
CGAAAAATATTCTGAGCTGAGGGAGGAATGCGCCGAGCTGAGCGAGGGGA
CTTCGCAATTTCCCGACAGCATTGAGGTACCTCCCTTCCCTCCTCTCGGG
TTGGTTATTCTCTCTTGTGGCATGGAGCTCTTAAGTTGCCATTTATAGGG
CATGTGGGAATTAATGTAGTGCGTGTCCTGTAAGGCCAGAGACCTTGGTC
TACGAACCTCCTCTTTCTCCCCAAAGGGGTGAAGCGCATGGCATCATACT
AATAAATGCTGATGAATAATGGATTGTTGGAAAGCCCTAGAGCAACCACC
ATAGACTTGTGAGAGTATCCCATCATAAATATTTATTAGTAGAATATAGC
CTGAGTAAATTACACATACACCGTCGGGTATGTGGCACGTGTGCAGTCTA
TATCGGTATATATGTCCACGTTTGTGTTATGTTGCGTGTCGTGGCGATTT
GGGTCGCTTTGCTATGTATGTGTCGTTTCTAAATATGTTTATGCTTTTAT
GAACCTCTCAAGGCAGATAAAGTTGTTAAGTACGAAGATCCTATTTTTGA
GCGATATCCAAAATCCGAAATTCGTATCAGAGGAAAGCGTCGCGCAATAT
AAATACCCCCTCCCTCGTACCCCTTCTCGCTCCCTACCTTCTTTCCCACA
CCCTTACTGGATTCCTAATGTTGACAGACGCCGAATATATTCCGGAGGAA
CGATCTCTGCCGGTGGTTGATGAAACTCAACGTGGGCCTCGCATATTGTT
TCCACAAGGATATGCTCAGAAAGGGCGTCAACGAGGATATCGATCCACAT
CCGTCCCTTTACGACCACCCAGACCGCCCCGACGGCGGCAGCCGGGTATG
GATAGAGGAACGGGGGTGGGGTCGGAATTGCATGGAGCCAAACGTTGTGT
TGGGCGATAATCCGAGTTCTTCGTGGCCGTCGATGGGGCAGATGCTACTG
GAGGGAGAGGCAAGGACAGAGGAGCCCCCCCTTCCGGGAGAAATGAGCCG
CAGGTTCGCGGCGAACGCCATGCGGGAGTTCAATACCTTCGAGCATATTG
CGTCAATGTGAGGAGGGGAGAATGTTCGGGCTTAGCGAAGGAGAAATAAC
ACAAGCTATCAGAGGCATTTCAGGGGCTTCGTTGTATTCATCTTACGATA
TATTTTTATCATGTTACTCTTCGGCTGCAAAATATAACTAGCTCTTGTTC
CGAGATGGACTCTGGTGTGGTCGATGATCATGCATATTCTTGCTTAGGTT
TACTTCTAAACCCTGATCACAACAGCAATTATAACCCTCCCTCGCCTCCC
TCCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig63272:925..2280-

>mRNA_H-elongata_contig63272.13904.1 ID=mRNA_H-elongata_contig63272.13904.1|Name=mRNA_H-elongata_contig63272.13904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig63272:925..2280- (Himanthalia elongata Himel1 dioecious)
ATGTACATGCGGGCGACTGAAACCTTCTGGATGAATCCATCACTTTTCGA
CGAAAAATATTCTGAGCTGAGGGAGGAATGCGCCGAGCTGAGCGAGGGGA
CTTCGCAATTTCCCGACAGCATTGAGATGTACATGCGGGCGACTGAAACC
TTCTGGATGAATCCATCACTTTTCGACGAAAAATATTCTGAGCTGAGGGA
GGAATGCGCCGAGCTGAGCGAGGGGACTTCGCAATTTCCCGACAGCATTG
AGACGCCGAATATATTCCGGAGGAACGATCTCTGCCGGTGGTTGATGAAA
CTCAACGTGGGCCTCGCATATTGTTTCCACAAGGATATGCTCAGAAAGGG
CGTCAACGAGGATATCGATCCACATCCGTCCCTTTACGACCACCCAGACC
GCCCCGACGGCGGCAGCCGGGTATGGATAGAGGAACGGGGGTGGGGTCGG
AATTGCATGGAGCCAAACGTTGTGTTGGGCGATAATCCGAGTTCTTCGTG
GCCGTCGATGGGGCAGATGCTACTGGAGGGAGAGGCAAGGACAGAGGAGC
CCCCCCTTCCGGGAGAAATGAGCCGCAGGTTCGCGGCGAACGCCATGCGG
GAGTTCAATACCTTCGAGCATATTGCGTCAATGTGAACGCCGAATATATT
CCGGAGGAACGATCTCTGCCGGTGGTTGATGAAACTCAACGTGGGCCTCG
CATATTGTTTCCACAAGGATATGCTCAGAAAGGGCGTCAACGAGGATATC
GATCCACATCCGTCCCTTTACGACCACCCAGACCGCCCCGACGGCGGCAG
CCGGGTATGGATAGAGGAACGGGGGTGGGGTCGGAATTGCATGGAGCCAA
ACGTTGTGTTGGGCGATAATCCGAGTTCTTCGTGGCCGTCGATGGGGCAG
ATGCTACTGGAGGGAGAGGCAAGGACAGAGGAGCCCCCCCTTCCGGGAGA
AATGAGCCGCAGGTTCGCGGCGAACGCCATGCGGGAGTTCAATACCTTCG
AGCATATTGCGTCAATGTGA
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