mRNA_H-elongata_contig63260.13898.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO) HSP 1 Score: 100 bits (250), Expect = 3.030e-23 Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 4 KTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
KTL+P+++YMTGV TWL++QNG D FVDEPLFIRNGRDLAAL+FNDVLYTEA RT+LIL IL
Sbjct: 265 KTLVPEMEYMTGVDTWLNIQNGGPPEDTLFVDEPLFIRNGRDLAALSFNDVLYTEAFRTILILFNESIL 333
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 1.780e-16 Identity = 43/72 (59.72%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 1 QKTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDE--PLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
Q TL+ ++DYMT WLDVQNG +FVDE PLFIRNGRDLAALAF D+LYTEA R L++ IL
Sbjct: 261 QVTLVKEMDYMTTFQDWLDVQNGASKVKTEFVDEDKPLFIRNGRDLAALAFTDLLYTEAFRAALVMFRQGIL 332
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.020e-15 Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 7 TLMPDVDYMTGVVTWLDVQNGVLAPDPQFVD--EPLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
TL+P +DYMT WLDVQNG +F+D EPLFIRNGRDLA L+FND LYTEA R LIL +L
Sbjct: 47 TLVPRMDYMTAFQPWLDVQNGDSDVVTEFIDPAEPLFIRNGRDLANLSFNDQLYTEAFRAALILFSESVL 116
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.160e-15 Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 7 TLMPDVDYMTGVVTWLDVQNGVLAPDPQFVD--EPLFIRNGRDLAALAFNDVLYTEALRTVLILLENKIL 210
TL+P +DYMT WLDVQNG +F+D EPLFIRNGRDLA L+FND LYTEA R LIL +L
Sbjct: 264 TLVPRMDYMTAFQPWLDVQNGDSDVVTEFIDPAEPLFIRNGRDLANLSFNDQLYTEAFRAALILFSESVL 333
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: A0A411NJW8_SACJA (Vanadium-dependent bromoperoxidase (Fragment) n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A411NJW8_SACJA) HSP 1 Score: 69.7 bits (169), Expect = 2.830e-12 Identity = 38/62 (61.29%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 10 LMPDVDYMTGVVTWLDVQNGVLAPDPQFVDE-PLFIRNGRDLAALAFNDVLYTEALRTVLIL 192
L P VDYMT WLDVQNG D E P FIRNGRDLA++AF D+LYTEA R LIL
Sbjct: 310 LAPGVDYMTSFQPWLDVQNGASDVDTIIDKENPRFIRNGRDLASIAFRDLLYTEAFRAALIL 371
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: A0ZCI9_NODSP (Uncharacterized protein n=2 Tax=Nodularia spumigena TaxID=70799 RepID=A0ZCI9_NODSP) HSP 1 Score: 58.2 bits (139), Expect = 3.300e-8 Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 QKTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILLEN 201
QKT+ PD++Y+T WL+VQNG LA +F P +IRN RD+ D LY L LILL++
Sbjct: 229 QKTVQPDINYLTDYDEWLNVQNGGLAGADKFDPTPRYIRNIRDIGQYVHVDALYEAYLNACLILLDD 295
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: A0A1Z4GLJ9_9CYAN (Twin-arginine translocation pathway signal n=4 Tax=Nostocales TaxID=1161 RepID=A0A1Z4GLJ9_9CYAN) HSP 1 Score: 53.9 bits (128), Expect = 1.030e-6 Identity = 28/65 (43.08%), Postives = 36/65 (55.38%), Query Frame = 1
Query: 1 QKTLMPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILL 195
QKT+ P++DY+T +WL +QNG A F P +IRN RD+ D LY L LILL
Sbjct: 232 QKTVAPNIDYLTDYNSWLSIQNGGAAKQDVFDPTPRYIRNLRDIGQYVHVDALYEAYLNACLILL 296
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Match: UPI00187FF134 (vanadium-dependent haloperoxidase n=1 Tax=unclassified Nodularia TaxID=2656917 RepID=UPI00187FF134) HSP 1 Score: 53.5 bits (127), Expect = 1.410e-6 Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1 QKTLMPDVDYMTGVVTWLDVQNGVLAP--DPQFVDEPLFIRNGRDLAALAFNDVLYTEALRTVLILLENK 204
QKT++PD++Y+T WL+VQNG P +F P +IRN RD+ D LY L LILL+ K
Sbjct: 232 QKTVLPDINYLTDYDDWLNVQNGDSDPIGKDKFDPTPRYIRNIRDIGQYVHVDALYEAYLNACLILLDIK 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63260.13898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63260.13898.1 >prot_H-elongata_contig63260.13898.1 ID=prot_H-elongata_contig63260.13898.1|Name=mRNA_H-elongata_contig63260.13898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp MPDVDYMTGVVTWLDVQNGVLAPDPQFVDEPLFIRNGRDLAALAFNDVLYback to top mRNA from alignment at H-elongata_contig63260:39..553+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63260.13898.1 ID=mRNA_H-elongata_contig63260.13898.1|Name=mRNA_H-elongata_contig63260.13898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at H-elongata_contig63260:39..553+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63260:39..553+ >mRNA_H-elongata_contig63260.13898.1 ID=mRNA_H-elongata_contig63260.13898.1|Name=mRNA_H-elongata_contig63260.13898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig63260:39..553+ (Himanthalia elongata Himel1 dioecious)back to top |