mRNA_H-elongata_contig63172.13893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63172.13893.1
Unique NamemRNA_H-elongata_contig63172.13893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: D7FU72_ECTSI (Histone-lysine N-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU72_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.460e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGCTS 138
            YGSI     D+IFR  G++S D FLDIGSG+GQ+V QAAAWAGC S
Sbjct:   17 YGSICAGAADFIFRICGLTSHDCFLDIGSGLGQIVTQAAAWAGCRS 62
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BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: A0A6H5KK39_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK39_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.550e-10
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGCTS 138
            YGSI     D+IFR  G++  D FLDIGSG+GQ+V QAAAWAGC S
Sbjct:  373 YGSICAGAADFIFRICGLTCHDCFLDIGSGLGQIVTQAAAWAGCKS 418
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BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 4.260e-9
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGC 132
            YGS++E  VD +FR   +++  +FLDIG GIG +V+QAAAWAGC
Sbjct:  592 YGSVFEAAVDLMFRKSKLTANHKFLDIGCGIGSIVLQAAAWAGC 635
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BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: W7TUH3_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUH3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.170e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGCTST 141
            YG+I   L+  + R  G++ +DRFLDIGSG+G VV+Q AA  GC +T
Sbjct:  388 YGAIRAPLIQEMIRFAGVTRQDRFLDIGSGLGTVVLQMAAVTGCHAT 434
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BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: A0A835ZFE6_9STRA (DOT1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.830e-6
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAG 129
            YG IY   +D I + IG++S D FLDIGSGIGQ V+Q AA  G
Sbjct:  464 YGGIYPMALDRIVQEIGVTSSDVFLDIGSGIGQAVLQVAACTG 506
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BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: UPI001458B29B (histone-lysine N-methyltransferase, H3 lysine-79 specific-like isoform X1 n=4 Tax=Pecten maximus TaxID=6579 RepID=UPI001458B29B)

HSP 1 Score: 50.1 bits (118), Expect = 1.080e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGC 132
            YG    DLVD + +SI  S  D F+D+GSG+GQVV+Q AA   C
Sbjct:  131 YGETSFDLVDQMIKSINFSETDYFIDLGSGVGQVVLQVAAATSC 174
[Close]
BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: B8P2T8_POSPM (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=3 Tax=Postia placenta TaxID=104341 RepID=B8P2T8_POSPM)

HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGCTS 138
            YG +   LV  I R  G+ +   FLD+GSG+GQVV+QA+   GCTS
Sbjct:  273 YGELEPKLVARIIRETGLRADSLFLDLGSGVGQVVLQASLHTGCTS 318
[Close]
BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: UPI00148A4123 (histone-lysine N-methyltransferase, H3 lysine-79 specific-like isoform X2 n=6 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A4123)

HSP 1 Score: 48.9 bits (115), Expect = 2.760e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGC 132
            YG    DLVD + +SI  S  D F+D+GSG+GQVV+Q AA   C
Sbjct:  133 YGETSFDLVDQMIKSINFSEDDYFIDLGSGVGQVVLQVAAATPC 176
[Close]
BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: K1RP96_CRAGI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1RP96_CRAGI)

HSP 1 Score: 48.9 bits (115), Expect = 2.760e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGC 132
            YG    DLVD + +SI  S  D F+D+GSG+GQVV+Q AA   C
Sbjct:  124 YGETSFDLVDQMIKSINFSEDDYFIDLGSGVGQVVLQVAAATPC 167
[Close]
BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Match: A0A8B8CV56_CRAVI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CV56_CRAVI)

HSP 1 Score: 48.5 bits (114), Expect = 3.780e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGC 132
            YG    DLVD + +SI  +  D F+D+GSG+GQVV+Q AA   C
Sbjct:  133 YGETSFDLVDQMIKSINFTEDDYFIDLGSGVGQVVLQVAAATSC 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63172.13893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FU72_ECTSI3.460e-1165.22Histone-lysine N-methyltransferase n=1 Tax=Ectocar... [more]
A0A6H5KK39_9PHAE2.550e-1063.04DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FU81_ECTSI4.260e-956.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TUH3_9STRA4.170e-651.06Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A835ZFE6_9STRA7.830e-658.14DOT1 domain-containing protein n=1 Tax=Tribonema m... [more]
UPI001458B29B1.080e-552.27histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
B8P2T8_POSPM2.730e-550.00Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
UPI00148A41232.760e-552.27histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
K1RP96_CRAGI2.760e-552.27Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A8B8CV56_CRAVI3.780e-550.00Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63172contigH-elongata_contig63172:947..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-25_002980.1
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.2388093-CDS-H-elongata_contig63172:946..10991622931015.2388093-CDS-H-elongata_contig63172:946..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63172 947..1099 +
1691679662.9583142-CDS-H-elongata_contig63172:946..10991691679662.9583142-CDS-H-elongata_contig63172:946..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63172 947..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63172.13893.1prot_H-elongata_contig63172.13893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63172 947..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63172.13893.1

>prot_H-elongata_contig63172.13893.1 ID=prot_H-elongata_contig63172.13893.1|Name=mRNA_H-elongata_contig63172.13893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
YGSIYEDLVDYIFRSIGMSSRDRFLDIGSGIGQVVMQAAAWAGCTSTVSS
*
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mRNA from alignment at H-elongata_contig63172:947..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63172.13893.1 ID=mRNA_H-elongata_contig63172.13893.1|Name=mRNA_H-elongata_contig63172.13893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig63172:947..1099+ (Himanthalia elongata Himel1 dioecious)
TACGGGTCGATCTACGAAGATCTGGTGGATTATATCTTCCGGAGCATAGG
GATGTCGTCCAGGGACCGGTTCCTCGACATCGGCAGCGGCATCGGGCAGG
TCGTCATGCAGGCGGCCGCCTGGGCGGGGTGCACTTCCACGGTGAGTTCT
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig63172:947..1099+

>mRNA_H-elongata_contig63172.13893.1 ID=mRNA_H-elongata_contig63172.13893.1|Name=mRNA_H-elongata_contig63172.13893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig63172:947..1099+ (Himanthalia elongata Himel1 dioecious)
TACGGGTCGATCTACGAAGATCTGGTGGATTATATCTTCCGGAGCATAGG
GATGTCGTCCAGGGACCGGTTCCTCGACATCGGCAGCGGCATCGGGCAGG
TCGTCATGCAGGCGGCCGCCTGGGCGGGGTGCACTTCCACGGTGAGTTCT
TAGTACGGGTCGATCTACGAAGATCTGGTGGATTATATCTTCCGGAGCAT
AGGGATGTCGTCCAGGGACCGGTTCCTCGACATCGGCAGCGGCATCGGGC
AGGTCGTCATGCAGGCGGCCGCCTGGGCGGGGTGCACTTCCACGGTGAGT
TCTTAG
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