mRNA_H-elongata_contig63166.13892.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig63166.13892.1
Unique NamemRNA_H-elongata_contig63166.13892.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig63166.13892.1 vs. uniprot
Match: D7FKH1_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH1_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 7.910e-87
Identity = 198/349 (56.73%), Postives = 226/349 (64.76%), Query Frame = 1 
Query:  232 DGRAGYTLLMLAQRERIAAAAALEETQKQQ----RSRAPIPGSSWPGDEMGF-DYRSRWEAPSSSSASFSTN---GAPTPGSSGSFTNPPSSSSGNFLGSQHRSHDGS----------------------ALCDQGSSSQDSQASKNSINQWVWTGQPRGTSVVARRPPPLKNPADAGVLGIAGRPPSG--PDSLGDSPGADWTKPTSTQSAQALYPA-KRHCSPRRRSFSHSPEPGSRSMMGMPANMA----SSPASPNMGPIMGMSSATGGTPSPSGAMGIPTPPGSXXSAALPPPHGAPRRSAQRLPNPQFPNRALPRTSSGGPPRPPRSLSPGGVTTARSGNEGF 1167
            DG AGYTLLMLAQRER+A                R RAP  GS WPG +M + DYR RWEA  SS +S  T+   G P PG         SSSSG+FL SQ     G                          + GS+ QD +A+ ++   WVWT QPRG+S  ARRPPPLKNPA+AGVLGIAGR  S     + GDSPGA+WTKP+STQSA A+YPA KRHCSPRRRSFSHSPEPGSR+M G+  +MA    SSPASPN   IM +  A+GGTPSP GAMGIPTPPGS  SAALPPPH A R +AQRLP PQF NRA+PR+SSGGPPRPPRSLSPGGV +     +GF
Sbjct:  183 DGGAGYTLLMLAQRERLAXXXXXXXXXXXXXXXARDRAPASGS-WPGKDMPYSDYRPRWEAAGSSGSSGGTSFSGGQPAPGGRTGTFGSNSSSSGSFLSSQRSGGGGGDSGSFTGEXXXXXXXXXXXXXXXXGEPGSAGQDGKAAAHNPQPWVWTAQPRGSSQGARRPPPLKNPAEAGVLGIAGRQQSPLLDSTRGDSPGAEWTKPSSTQSAHAMYPAVKRHCSPRRRSFSHSPEPGSRTMAGLTGSMAGLQASSPASPN---IMSLG-ASGGTPSP-GAMGIPTPPGSSGSAALPPPHRARRSTAQRLPQPQFQNRAVPRSSSGGPPRPPRSLSPGGVASTARSPDGF 525
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BLAST of mRNA_H-elongata_contig63166.13892.1 vs. uniprot
Match: A0A7S3Y5C3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5C3_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 2.910e-5
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   16 MVDVVNKRCQHVGCKKRPVFGFEGE-KGRFCSLHR 117
            MVDVVN+RC+  GCKK PV+ FEGE KGRFC  H+
Sbjct:    1 MVDVVNRRCEVPGCKKHPVYNFEGEPKGRFCGFHK 35
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63166.13892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKH1_ECTSI7.910e-8756.73EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH1... [more]
A0A7S3Y5C3_HETAK2.910e-568.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63166contigH-elongata_contig63166:122..1803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue5.8e-79
Seed eggNOG ortholog2880.D7FKH1
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-12_002100.1
Exons2
Model size1269
Cds size1269
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.170164-CDS-H-elongata_contig63166:121..2441622931015.170164-CDS-H-elongata_contig63166:121..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63166 122..244 +
1691679662.9395812-CDS-H-elongata_contig63166:121..2441691679662.9395812-CDS-H-elongata_contig63166:121..244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63166 122..244 +
1622931015.1913893-CDS-H-elongata_contig63166:657..18031622931015.1913893-CDS-H-elongata_contig63166:657..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63166 658..1803 +
1691679662.9491153-CDS-H-elongata_contig63166:657..18031691679662.9491153-CDS-H-elongata_contig63166:657..1803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig63166 658..1803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63166.13892.1prot_H-elongata_contig63166.13892.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig63166 122..1803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig63166.13892.1

>prot_H-elongata_contig63166.13892.1 ID=prot_H-elongata_contig63166.13892.1|Name=mRNA_H-elongata_contig63166.13892.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=423bp
MQSEGMVDVVNKRCQHVGCKKRPVFGFEGEKGRFCSLHRSGGMVDVVSRR
CDSPGCKRQPSGTTDATQVQFCSLHRGDGRAGYTLLMLAQRERIAAAAAL
EETQKQQRSRAPIPGSSWPGDEMGFDYRSRWEAPSSSSASFSTNGAPTPG
SSGSFTNPPSSSSGNFLGSQHRSHDGSALCDQGSSSQDSQASKNSINQWV
WTGQPRGTSVVARRPPPLKNPADAGVLGIAGRPPSGPDSLGDSPGADWTK
PTSTQSAQALYPAKRHCSPRRRSFSHSPEPGSRSMMGMPANMASSPASPN
MGPIMGMSSATGGTPSPSGAMGIPTPPGSSGSAALPPPHGAPRRSAQRLP
NPQFPNRALPRTSSGGPPRPPRSLSPGGVTTARSGNEGFYVGRSPISNVG
FSPSGPQSANSIGGFSGVFSPGN
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mRNA from alignment at H-elongata_contig63166:122..1803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig63166.13892.1 ID=mRNA_H-elongata_contig63166.13892.1|Name=mRNA_H-elongata_contig63166.13892.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1682bp|location=Sequence derived from alignment at H-elongata_contig63166:122..1803+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAGCGAAGGCATGGTCGATGTCGTTAACAAGCGCTGTCAGCACGT
GGGATGCAAGAAACGTCCTGTTTTCGGGTTTGAGGGGGAGAAGGGTCGCT
TCTGCTCTCTGCACCGATCAGGGGTAAGTGCGGAACACTCGATGGCGTAC
ACGTCGTGTTCACTCTCACGTTGCATGATGTAATCGTTCTTACTTTTTTG
GGTTGTCTGGTTGGGCACAACACTTTCGAGGTAACTGTGACAAAAGGTTT
TACACATTTGCAGGAACAGTGTGCATGTAAGCAGATCATATCGGCCCTGT
ATGCGCATGTTGCCGCTGTTCAACCTCATGCGCTAGACCCCTCCTTAAAG
AATACGCGAACTACACACCATGCGCGAAAAGTTTTTTGCGAATTTTGAAT
CGTTACATAGCGGCATGTTTTTGTATCAAATACTTTGCCTCGTAACCTGC
AAGAATAGCTTAGTTTTGGGCATTGTGGACATTTTGGCTAATATAGCAAC
GCACGAAATGATCTCGTGCTCTCAATGGGTTTGCAGGGAATGGTCGACGT
CGTGTCCCGGCGCTGCGACTCCCCTGGTTGCAAGCGACAGCCCAGCGGCA
CCACAGATGCGACTCAGGTGCAGTTCTGCTCCCTCCACCGCGGTGACGGC
CGCGCCGGCTACACCCTACTCATGCTTGCCCAGCGCGAGAGGATCGCCGC
GGCGGCAGCGCTCGAAGAAACTCAAAAGCAGCAGCGTTCCCGCGCCCCCA
TCCCTGGATCCTCCTGGCCCGGGGATGAGATGGGCTTCGACTACCGTTCG
AGATGGGAGGCTCCGTCGTCTAGCTCAGCTAGCTTTTCGACAAACGGAGC
GCCGACTCCTGGTTCGAGCGGATCTTTTACCAACCCTCCATCTAGCTCTT
CAGGGAACTTCTTGGGATCCCAGCACCGCAGCCACGACGGTAGTGCCTTA
TGCGATCAAGGTAGCTCTAGTCAGGACTCACAGGCTTCAAAGAACAGCAT
AAACCAGTGGGTGTGGACCGGTCAGCCTCGTGGCACGTCCGTCGTGGCGC
GCCGCCCCCCACCACTCAAGAATCCAGCAGACGCCGGGGTGCTTGGCATT
GCCGGGCGCCCGCCCTCAGGTCCTGATTCACTTGGCGACAGCCCAGGAGC
TGACTGGACGAAACCCACCTCTACGCAGTCAGCACAGGCCTTATATCCCG
CCAAACGCCACTGTTCGCCAAGGCGCCGATCCTTCAGCCACTCACCCGAG
CCGGGATCGCGGTCGATGATGGGGATGCCTGCGAACATGGCATCTTCCCC
GGCGTCTCCAAACATGGGCCCCATCATGGGAATGAGCTCCGCGACAGGTG
GTACTCCATCGCCGTCTGGTGCGATGGGTATACCGACTCCGCCAGGGTCT
TCTGGATCAGCTGCACTGCCCCCGCCCCACGGCGCTCCCCGCCGAAGTGC
CCAACGTCTACCCAACCCACAGTTTCCGAACCGCGCTTTGCCACGCACCT
CATCGGGAGGCCCACCGCGCCCGCCGCGTTCTTTGTCGCCAGGCGGCGTG
ACGACGGCGCGCAGCGGCAACGAAGGATTCTACGTCGGGCGTAGTCCTAT
CAGCAATGTCGGCTTCAGTCCTAGCGGGCCGCAGTCGGCCAATTCGATTG
GGGGTTTCAGCGGCGTCTTCAGCCCCGGTAAT
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Coding sequence (CDS) from alignment at H-elongata_contig63166:122..1803+

>mRNA_H-elongata_contig63166.13892.1 ID=mRNA_H-elongata_contig63166.13892.1|Name=mRNA_H-elongata_contig63166.13892.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2538bp|location=Sequence derived from alignment at H-elongata_contig63166:122..1803+ (Himanthalia elongata Himel1 dioecious)
ATGCAGAGCGAAGGCATGGTCGATGTCGTTAACAAGCGCTGTCAGCACGT
GGGATGCAAGAAACGTCCTGTTTTCGGGTTTGAGGGGGAGAAGGGTCGCT
TCTGCTCTCTGCACCGATCAGGGATGCAGAGCGAAGGCATGGTCGATGTC
GTTAACAAGCGCTGTCAGCACGTGGGATGCAAGAAACGTCCTGTTTTCGG
GTTTGAGGGGGAGAAGGGTCGCTTCTGCTCTCTGCACCGATCAGGGGGAA
TGGTCGACGTCGTGTCCCGGCGCTGCGACTCCCCTGGTTGCAAGCGACAG
CCCAGCGGCACCACAGATGCGACTCAGGTGCAGTTCTGCTCCCTCCACCG
CGGTGACGGCCGCGCCGGCTACACCCTACTCATGCTTGCCCAGCGCGAGA
GGATCGCCGCGGCGGCAGCGCTCGAAGAAACTCAAAAGCAGCAGCGTTCC
CGCGCCCCCATCCCTGGATCCTCCTGGCCCGGGGATGAGATGGGCTTCGA
CTACCGTTCGAGATGGGAGGCTCCGTCGTCTAGCTCAGCTAGCTTTTCGA
CAAACGGAGCGCCGACTCCTGGTTCGAGCGGATCTTTTACCAACCCTCCA
TCTAGCTCTTCAGGGAACTTCTTGGGATCCCAGCACCGCAGCCACGACGG
TAGTGCCTTATGCGATCAAGGTAGCTCTAGTCAGGACTCACAGGCTTCAA
AGAACAGCATAAACCAGTGGGTGTGGACCGGTCAGCCTCGTGGCACGTCC
GTCGTGGCGCGCCGCCCCCCACCACTCAAGAATCCAGCAGACGCCGGGGT
GCTTGGCATTGCCGGGCGCCCGCCCTCAGGTCCTGATTCACTTGGCGACA
GCCCAGGAGCTGACTGGACGAAACCCACCTCTACGCAGTCAGCACAGGCC
TTATATCCCGCCAAACGCCACTGTTCGCCAAGGCGCCGATCCTTCAGCCA
CTCACCCGAGCCGGGATCGCGGTCGATGATGGGGATGCCTGCGAACATGG
CATCTTCCCCGGCGTCTCCAAACATGGGCCCCATCATGGGAATGAGCTCC
GCGACAGGTGGTACTCCATCGCCGTCTGGTGCGATGGGTATACCGACTCC
GCCAGGGTCTTCTGGATCAGCTGCACTGCCCCCGCCCCACGGCGCTCCCC
GCCGAAGTGCCCAACGTCTACCCAACCCACAGTTTCCGAACCGCGCTTTG
CCACGCACCTCATCGGGAGGCCCACCGCGCCCGCCGCGTTCTTTGTCGCC
AGGCGGCGTGACGACGGCGCGCAGCGGCAACGAAGGATTCTACGTCGGGC
GTAGTCCTATCAGCAATGTCGGCTTCAGTCCTAGCGGGCCGCAGTCGGCC
AATTCGATTGGGGGTTTCAGCGGCGTCTTCAGCCCCGGTAATGGAATGGT
CGACGTCGTGTCCCGGCGCTGCGACTCCCCTGGTTGCAAGCGACAGCCCA
GCGGCACCACAGATGCGACTCAGGTGCAGTTCTGCTCCCTCCACCGCGGT
GACGGCCGCGCCGGCTACACCCTACTCATGCTTGCCCAGCGCGAGAGGAT
CGCCGCGGCGGCAGCGCTCGAAGAAACTCAAAAGCAGCAGCGTTCCCGCG
CCCCCATCCCTGGATCCTCCTGGCCCGGGGATGAGATGGGCTTCGACTAC
CGTTCGAGATGGGAGGCTCCGTCGTCTAGCTCAGCTAGCTTTTCGACAAA
CGGAGCGCCGACTCCTGGTTCGAGCGGATCTTTTACCAACCCTCCATCTA
GCTCTTCAGGGAACTTCTTGGGATCCCAGCACCGCAGCCACGACGGTAGT
GCCTTATGCGATCAAGGTAGCTCTAGTCAGGACTCACAGGCTTCAAAGAA
CAGCATAAACCAGTGGGTGTGGACCGGTCAGCCTCGTGGCACGTCCGTCG
TGGCGCGCCGCCCCCCACCACTCAAGAATCCAGCAGACGCCGGGGTGCTT
GGCATTGCCGGGCGCCCGCCCTCAGGTCCTGATTCACTTGGCGACAGCCC
AGGAGCTGACTGGACGAAACCCACCTCTACGCAGTCAGCACAGGCCTTAT
ATCCCGCCAAACGCCACTGTTCGCCAAGGCGCCGATCCTTCAGCCACTCA
CCCGAGCCGGGATCGCGGTCGATGATGGGGATGCCTGCGAACATGGCATC
TTCCCCGGCGTCTCCAAACATGGGCCCCATCATGGGAATGAGCTCCGCGA
CAGGTGGTACTCCATCGCCGTCTGGTGCGATGGGTATACCGACTCCGCCA
GGGTCTTCTGGATCAGCTGCACTGCCCCCGCCCCACGGCGCTCCCCGCCG
AAGTGCCCAACGTCTACCCAACCCACAGTTTCCGAACCGCGCTTTGCCAC
GCACCTCATCGGGAGGCCCACCGCGCCCGCCGCGTTCTTTGTCGCCAGGC
GGCGTGACGACGGCGCGCAGCGGCAACGAAGGATTCTACGTCGGGCGTAG
TCCTATCAGCAATGTCGGCTTCAGTCCTAGCGGGCCGCAGTCGGCCAATT
CGATTGGGGGTTTCAGCGGCGTCTTCAGCCCCGGTAAT
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