mRNA_H-elongata_contig63005.13878.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: D7FXL6_ECTSI (DNA-damage-inducible protein f, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL6_ECTSI) HSP 1 Score: 311 bits (796), Expect = 3.720e-98 Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 1
Query: 1 SPPVSQVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRKSGKVSFMPYRKELHQFLSLGIPMCLALSGQVATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAFTVKRPTKPGGRASRTLTYSKVCVDLV 612
+P VS VLP SCSYVYIRA+GFVAVT+SMVLQ AYLA+KD+ TPIKSVAGASV NLVLDC+AVF GMGIKGAAL+TTVAQW LV+L+K++WPDL+KSG+VSF PYRKEL FL LG P CLALSGQVATC+++TVAASGCDTVALAAHQ+LYGVFLLFCPIGEAVSQTVQT+LP +TVKRP + GR RTLT+ K V ++
Sbjct: 466 NPAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIKSVAGASVANLVLDCVAVFGLGMGIKGAALATTVAQWVGLVYLVKEFWPDLQKSGQVSFFPYRKELKTFLQLGAPTCLALSGQVATCVAVTVAASGCDTVALAAHQILYGVFLLFCPIGEAVSQTVQTYLPGYTVKRPPRRDGRPRRTLTFGKSAVRMI 669
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A6H5L6W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W0_9PHAE) HSP 1 Score: 311 bits (796), Expect = 7.380e-98 Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 1
Query: 1 SPPVSQVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRKSGKVSFMPYRKELHQFLSLGIPMCLALSGQVATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAFTVKRPTKPGGRASRTLTYSKVCVDLV 612
+P VS VLP SCSYVYIRA+GFVAVT+SMVLQ AYLA+KD+ TPIKSVAGASV NLVLDC+AVF GMGIKGAAL+TTVAQW LV+L+K++WPDL+KSG+VSF PYRKEL FL LG P CLALSGQVATC+++TVAASGCDTVALAAHQ+LYGVFLLFCPIGEAVSQTVQT+LP +TVKRP + GR RTLT+ K V ++
Sbjct: 552 NPAVSSVLPHSCSYVYIRAMGFVAVTVSMVLQSAYLARKDIATPIKSVAGASVANLVLDCVAVFGLGMGIKGAALATTVAQWVGLVYLVKEFWPDLQKSGQVSFFPYRKELKTFLQLGAPTCLALSGQVATCVAVTVAASGCDTVALAAHQILYGVFLLFCPIGEAVSQTVQTYLPGYTVKRPPRRDGRPRRTLTFGKSAVRMI 755
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A7S0ECV6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ECV6_9EUKA) HSP 1 Score: 113 bits (283), Expect = 1.740e-25 Identity = 73/201 (36.32%), Postives = 116/201 (57.71%), Query Frame = 1
Query: 19 VLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRKSGKVS---FMPYRKELHQFLSLGIPMCLALSGQVATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAFTVKRPTKPGGRASRTLTYSKVCVDLV 612
VL + Y IRALGF A +++VLQ A+LA KD ++P+ +V +++ NLVLD V G+G GAA T + + LL + R G+ + +P R E+ + L +PM +AL +V+ +S+T++A+ TVALA++QV+ V+ LFCPIGEA+S +QT++P+ R + G + T + + LV
Sbjct: 296 VLAAATEYTVIRALGFPAALLTLVLQAAFLASKDALSPLLAVPLSALTNLVLDLFLVGSLGLGTAGAAWGTVASLYVNGFTLLAMWHVKARTLGEATPLFTLPSRAEMQKLLVFIVPMLVALCSRVSMGLSITLSATALGTVALASNQVVESVYWLFCPIGEAISLCMQTYMPSVLAARR-RAGAQMRATCERTSLVAALV 495
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A8J2WS84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS84_9STRA) HSP 1 Score: 103 bits (256), Expect = 7.500e-22 Identity = 79/214 (36.92%), Postives = 115/214 (53.74%), Query Frame = 1
Query: 37 SYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLK-----QYWPDLRKS-GKVSFMPYRKELHQFLSLGIPMCLALSGQVATCISLTVAASGC-----DTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAFTV-----------KRPTKPGGRASRTLTYSKVCVDLV 612
+Y IR+L FV + MVLQ LA+++V P+K+ + NLV D + V MG+ GAAL+TT AQ AL+ LL+ ++ P K + + P+R Q + G P+ ALS + A +SL+ AA+ D ALAAHQ+L G++ +F P+G+A+SQTVQTFLP V ++ +K G SR + V LV
Sbjct: 311 AYTRIRSLAFVPALLIMVLQSTSLARRNVRAPLKAAGLSGAANLVGD--GILVPTMGLAGAALATTAAQIVALIALLQDAAKGKFLPSSPKQWARSAGAPFR----QIFTKGAPVVAALSAKTAVLLSLSYAAASTATKRGDLAALAAHQILVGLYFVFAPVGDALSQTVQTFLPRSIVADQLDEVDRPPQKRSKALGPKSRAVVKGAVAAALV 518
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A8J2WR19_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WR19_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.070e-21 Identity = 69/178 (38.76%), Postives = 101/178 (56.74%), Query Frame = 1
Query: 13 SQVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRKSGKVSFMPYR-----KELHQFLSLGIPMCLALSGQVATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPA 531
++ LP + SY +RALGF A +++VLQ A LA++DV TP+K+V ++VN V D + V G G+ GAA +T AQ A LL+ ++ + +P R + FL LALS +++ +S+ AS C T ALAA Q L G F +F P+G+A+ QT+Q LPA
Sbjct: 162 ARALPLAVSYTRVRALGFPAALLTVVLQSAALARRDVRTPLKAVWLGALVNGVGDYVLVARCGAGVAGAAAATVAAQCVAAGVLLRA------EARAATTLPRRLADRARSAWSFLIRCAAPALALSARLSVQLSVAATASACGTAALAAQQALSGTFQIFRPLGDALGQTMQALLPA 333
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: L1IGQ5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IGQ5_GUITC) HSP 1 Score: 88.2 bits (217), Expect = 1.980e-17 Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 1
Query: 13 SQVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRKSGKVSFMPYRKELHQFLSLGIPMCLALSGQVATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLP 528
+ L S YV IR LG + MV Q A + KD +P+++VA + VN+ LD L V G+ GAA++TT++Q+A +L L K + +P KE +F P+ L G+ T AA+ T+ALAAHQ++ +F F GE+V QT Q F+P
Sbjct: 116 ADTLDLSMRYVLIRGLGSAPTLLCMVAQAACIGAKDADSPLRAVAILAGVNIFLDWLFVGPLKTGVGGAAIATTISQFAGAFYLY------LAKRKGLFVIPTMKEFVKFFQFAGPIFLISFGRGYCWNICTPAAAAAGTIALAAHQIVINIFFFFTIAGESVFQTAQAFMP 281
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A7S0IW58_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IW58_9EUKA) HSP 1 Score: 89.4 bits (220), Expect = 3.860e-17 Identity = 66/179 (36.87%), Postives = 95/179 (53.07%), Query Frame = 1
Query: 40 YVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQW---AALVFLLKQYWPDLRKSGKVSF------------MPYRKELHQFLSLGIPMCLALSGQVATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPA 531
Y IRA G+ A +MVLQ A+LA KD ++P+ ++ ++ NLV D + V GMG GAA +T +Q+ A L+ L K+ R G S +P R+E L PM LA+ + I++ + TV+LAAHQV+ ++ LF P G+AVS +VQ FLPA
Sbjct: 293 YTAIRAFGYPAALTTMVLQAAFLASKDAMSPLLTLPAVALANLVGDLVLVGPMGMGPAGAAWATIASQFVNAALLLALWKRKLATGRPEGCGSAAEGCGAGVPLLALPTRQEFRSLLVFIAPMMLAIGARSYMGIAVAATVATLGTVSLAAHQVVECLYWLFTPFGDAVSLSVQAFLPA 471
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A7S0G8B3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G8B3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.450e-16 Identity = 76/217 (35.02%), Postives = 107/217 (49.31%), Query Frame = 1
Query: 13 SQVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRK-----------SGKVSFM--PYRKELHQFLSLGIPMCLALSGQ--VATCISLTVAASGCDTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAFTVKRPTK--PGGRASRTLTYSKVCVDLV 612
+ V+P + Y IRA G V M+ V + A LA+KD P+ SVA AS++N V V + G+GI+GAA+ T VA AA FLL + K S +V + P R+ +F S P+ + G+ V + T+ G +VALAAHQVL F + P+G++V T Q FLPA K + P A R L + + LV
Sbjct: 185 ASVVPSALQYATIRAFGQPFVVMASVARAAALARKDTRGPLVSVALASLLNFVGTTSLVRLTGLGIRGAAIGTLVADIAATTFLLTRIRTSRTKRQNRIIDEKLHSKQVPLLVLPSRESFFRFGSYAAPIFFTILGKSVVYNGVGATIGRMG--SVALAAHQVLLQSFFFWTPVGDSVGMTSQVFLPAILAKEKAEGVPQRGAKRLLFVTGMVSGLV 399
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A7S1VEP0_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VEP0_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.150e-16 Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 1
Query: 16 QVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDL-------------RKSGKVSFMPYRKEL------HQFLSLGIPMCLALSGQVATCISLTVAASGC--DTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAF 534
+L +S YV IRAL + VLQ A L KD VTP+ +V + VVN++ D +AV GMG++GAA++TT+AQWA+ L+ L RK K +++ FL+ P+ + G++A +T AA+G LA+HQ++ F P E +SQT QTFLP +
Sbjct: 220 HLLDWSTEYVQIRALSMPTSLLLGVLQAALLGAKDSVTPLIAVVYSMVVNVIGDYIAVKRLGMGLRGAAMATTLAQWASTYALIGPARQKLVKDHNLGLLMGGGRKGDKEGGKKKKRKNDGLVTGRSFLAFAAPVLTLILGKLAAFGFMTHAAAGLPGQPTTLASHQIILSTFFFISPFLEVISQTAQTFLPPY 413
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Match: A0A7S2XNY1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNY1_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.930e-16 Identity = 59/179 (32.96%), Postives = 93/179 (51.96%), Query Frame = 1
Query: 40 YVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGASVVNLVLDCLAVFVWGMGIKGAALSTTVAQWAALVFLLKQYWPDLRKSGKVSFMPYRKELHQ------------FLSLGIPMCLALSGQVATCISLTVAASGC--DTVALAAHQVLYGVFLLFCPIGEAVSQTVQTFLPAF 534
YV IRAL + VLQ A L KD +TP+ ++ ++V+N++ D + V GMG+KGA+++TT+AQWAA + L+ L G + + +++ FL P+ + G++A +T AA+ + LAAHQ+ +F P E +SQT QTFLP +
Sbjct: 241 YVNIRALSMPTSLLLGVLQSALLGAKDSITPLVAILYSTVINVIGDYILVSRLGMGLKGASIATTLAQWAATISLIGPARRALLNGGGLQLLGSSRKVADGGTTNDVVTSKTFLKFAAPVLTLIIGKIAAFGFMTNAAAALPGQPMTLAAHQICLSLFFFMSPFLEVMSQTAQTFLPPY 419 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63005.13878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig63005.13878.1 >prot_H-elongata_contig63005.13878.1 ID=prot_H-elongata_contig63005.13878.1|Name=mRNA_H-elongata_contig63005.13878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp SPPVSQVLPFSCSYVYIRALGFVAVTMSMVLQGAYLAKKDVVTPIKSVAGback to top mRNA from alignment at H-elongata_contig63005:441..2560- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig63005.13878.1 ID=mRNA_H-elongata_contig63005.13878.1|Name=mRNA_H-elongata_contig63005.13878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2120bp|location=Sequence derived from alignment at H-elongata_contig63005:441..2560- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig63005:441..2560- >mRNA_H-elongata_contig63005.13878.1 ID=mRNA_H-elongata_contig63005.13878.1|Name=mRNA_H-elongata_contig63005.13878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig63005:441..2560- (Himanthalia elongata Himel1 dioecious)back to top |