mRNA_H-elongata_contig6297.13874.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6297.13874.1
Unique NamemRNA_H-elongata_contig6297.13874.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: D8LR35_ECTSI (Nad-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR35_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 7.260e-160
Identity = 220/250 (88.00%), Postives = 233/250 (93.20%), Query Frame = 1
Query:    1 LGTNLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTGNNYANSEVVVQSTDSLDRLSGK 750
            + +N+LEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKE DAWPAKPQDTYGLEKLYHEEMCKAYA DFPI+TR+ARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEG+IRIMEGDY LPLNLGTEEMVSMN+FA IAM FE K LPIRH+PGPEGVRGRNSDNTLIREKL WAPSV I EGLRKTYFWI+DQVE E A GTGNNY  SEVVVQ+T+SL++LS K
Sbjct:  130 ISSNILEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEADAWPAKPQDTYGLEKLYHEEMCKAYAADFPIETRMARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGTIRIMEGDYRLPLNLGTEEMVSMNKFAAIAMGFEGKDLPIRHIPGPEGVRGRNSDNTLIREKLSWAPSVTIAEGLRKTYFWIKDQVEAEKAAGTGNNYDTSEVVVQTTESLEQLSHK 379          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A7S2C9X7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9X7_9STRA)

HSP 1 Score: 403 bits (1035), Expect = 3.750e-133
Identity = 189/242 (78.10%), Postives = 207/242 (85.54%), Query Frame = 1
Query:   10 NLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTG-NNYANSEVVVQSTDSL 732
            N+LEAAR N A RYFY+STACVYNED QLDPSNPGLKE  AWPAKPQDTYGLEKLY EEM  AYAKDF I TR+ARYHNVYGP GTWKGGREKAPAAFCRKAICST  FEMWGDGEQTRSFMF+DDCVEGS+RIM  DY LPLNLGTEEMVSMNEFA IAMS+E K LPI+H+PGP+GVRGRNSDNTLIREKL W+PS+ I +GL K YFWI+ Q + EAA G     Y +S+VVVQ+T+SL
Sbjct:  117 NMLEAARTNGAARYFYSSTACVYNEDYQLDPSNPGLKESYAWPAKPQDTYGLEKLYAEEMALAYAKDFDIVTRVARYHNVYGPHGTWKGGREKAPAAFCRKAICSTDFFEMWGDGEQTRSFMFVDDCVEGSLRIMNSDYELPLNLGTEEMVSMNEFAAIAMSYESKTLPIKHIPGPQGVRGRNSDNTLIREKLGWSPSISIRDGLEKAYFWIKAQADAEAASGVDITQYGHSKVVVQTTESL 358          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A6U1M3G1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M3G1_9STRA)

HSP 1 Score: 400 bits (1029), Expect = 1.370e-132
Identity = 187/248 (75.40%), Postives = 216/248 (87.10%), Query Frame = 1
Query:   10 NLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTG-NNYANSEVVVQSTDSLDRLSGK 750
            N+LEAAR+N A+RYFY STACVYNED Q+DP+NPGLKE DAWPAKPQDTYGLEKLYHEEM KAYAKDFPI+TRIAR HNVYGP GTWKGGREKAPAAFCRKAI STK+FEMWGDG QTRSFMF+DDCVEG +RI   D   PLNLGTEEM+SM +FA IAMSFEDK LPI+H+ GP+GVRGRNSDNT+I+E+L WAPS+ I EGL+KTYFWI++QVE ++ KG   + Y++S VV Q TDSL++L+GK
Sbjct:  115 NMLEAARMNNAERYFYTSTACVYNEDNQMDPNNPGLKEADAWPAKPQDTYGLEKLYHEEMAKAYAKDFPIKTRIARLHNVYGPMGTWKGGREKAPAAFCRKAITSTKEFEMWGDGLQTRSFMFVDDCVEGILRITFSDCDEPLNLGTEEMLSMIDFAKIAMSFEDKDLPIKHIEGPQGVRGRNSDNTMIKERLGWAPSISIAEGLKKTYFWIKEQVEKDSEKGIDPSTYSSSVVVTQVTDSLEQLAGK 362          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A7S2CJC0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJC0_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 2.640e-131
Identity = 183/246 (74.39%), Postives = 212/246 (86.18%), Query Frame = 1
Query:    1 LGTNLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTGNN-YANSEVVVQSTDSLD 735
            L  N+LEA+R+N  +RYFY+STACVYNED QLDP+NPGLKE DAWPAKPQDTYGLEKLY EEM  AYA+DFPI TR+ARYHNVYGP GTWKGGREKAPAAFCRKAICST+ FEMWGDGEQTRSFMF+DDCVEGS++IM  D  +PLNLGTE+MVSMNEFA IAMS+E K LPI+H+PGP+GVRGRNSDNT+IREKL W P +PI +GL+K YFWI+ + + EAA G     Y +S+VVVQST+SL+
Sbjct:  126 LSFNMLEASRMNGVQRYFYSSTACVYNEDKQLDPTNPGLKESDAWPAKPQDTYGLEKLYAEEMALAYARDFPITTRVARYHNVYGPHGTWKGGREKAPAAFCRKAICSTEFFEMWGDGEQTRSFMFVDDCVEGSLKIMHSDCEVPLNLGTEQMVSMNEFAAIAMSYESKTLPIKHIPGPQGVRGRNSDNTMIREKLGWEPLIPIEDGLKKAYFWIKSKCDEEAAAGQDITLYGHSKVVVQSTESLE 371          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A4D9CQJ4_9STRA (Epimerase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQJ4_9STRA)

HSP 1 Score: 394 bits (1012), Expect = 7.040e-130
Identity = 183/251 (72.91%), Postives = 217/251 (86.45%), Query Frame = 1
Query:    1 LGTNLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYA-LPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTGNNYANSEVVVQSTDSLDRLSGK 750
            + +N+LEAAR N A+RYFY+STACVYNEDLQLDPSNPGLKEGDAWPAKPQ+ YGLEKLYHEEM  AY++DFP+ +RIAR+HNVYGP GTWKGGREKAPAAFCRKA+ ST+ FE+WGDGEQTRSFM++DDCVEG +RIM  D A +PLNLGTE+MVSMN FA IAM FE KKLPI+H+PGP+GVRGRNSDNTLIRE L W P + I +GLR+TYFWI+ Q+E E A G   +Y++S+VVVQ+T+SLD L+ K
Sbjct:  105 VSSNVLEAARRNGAERYFYSSTACVYNEDLQLDPSNPGLKEGDAWPAKPQEVYGLEKLYHEEMALAYSRDFPLVSRIARFHNVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCVEGVLRIMMSDTATMPLNLGTEQMVSMNSFAEIAMGFEGKKLPIKHIPGPQGVRGRNSDNTLIREMLGWEPLISIEDGLRETYFWIKGQIEKERAAGMVFDYSSSKVVVQTTESLDALASK 355          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A6U4FV39_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FV39_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 1.930e-129
Identity = 182/248 (73.39%), Postives = 208/248 (83.87%), Query Frame = 1
Query:    1 LGTNLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTG-NNYANSEVVVQSTDSLDRL 741
            L +N+LEAAR+  A+RYFY+STACVYNEDLQLDP+NPGL+EGDAWPAKPQD+YGLEKLYHE+M   Y +DFP+ TRIAR+HNVYGP GTWKGGREKAPAAFCRKAICST+ FEMWGDGEQTRSFMFI+DCVEG +RIM GDY  PLNLGTEEMVSMNEFA IAMSFE K L + H+PGP+GVRGRNS+N LIREKL WAP + I EGLRKTYFWI+ QV+ E  +G     Y  S VV Q T  +++L
Sbjct:  113 LSSNVLEAARMKGAERYFYSSTACVYNEDLQLDPTNPGLREGDAWPAKPQDSYGLEKLYHEQMALTYGEDFPLVTRIARFHNVYGPMGTWKGGREKAPAAFCRKAICSTEVFEMWGDGEQTRSFMFIEDCVEGCLRIMFGDYDKPLNLGTEEMVSMNEFADIAMSFEGKNLKVHHIPGPQGVRGRNSNNDLIREKLGWAPEIAIAEGLRKTYFWIKAQVDSEREEGVDVTQYGCSRVVQQDTSIIEKL 360          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A8J2X357_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X357_9STRA)

HSP 1 Score: 382 bits (980), Expect = 3.660e-125
Identity = 174/251 (69.32%), Postives = 207/251 (82.47%), Query Frame = 1
Query:   10 NLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTG-NNYANSEVVVQSTDSLDRLSGKAAA 759
            N+LEAAR    KRYFY+S+ACVYN+DLQLDP NPGLKEGDAWPAKPQDTYGLEKLY EEM   Y +DF I+ R AR+HNVYGPRGTWKGGREKAPAAFCRKA+C+T +FEMWGDG+QTRSFMFIDDCV+G  +IM+ D   PLNLG++EM+ MN+FA +A+SFE K LPI+H+PGPEGVRGRNSDN +I+EKL WAPS+P+ EGL+KTYFWI+ QVE + A G        SE+VVQ+TD LD L+ +  A
Sbjct:  115 NMLEAARCKGVKRYFYSSSACVYNDDLQLDPENPGLKEGDAWPAKPQDTYGLEKLYAEEMGIVYGRDFGIKFRCARFHNVYGPRGTWKGGREKAPAAFCRKAVCATTEFEMWGDGKQTRSFMFIDDCVQGIQKIMDSDCEQPLNLGSDEMIDMNDFAKLALSFEAKNLPIKHIPGPEGVRGRNSDNQMIKEKLGWAPSIPVAEGLKKTYFWIKAQVEKDKAAGLDITKLGTSEIVVQTTDDLDELAAQGLA 365          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: F0YA16_AURAN (Epimerase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA16_AURAN)

HSP 1 Score: 377 bits (969), Expect = 1.890e-123
Identity = 173/249 (69.48%), Postives = 204/249 (81.93%), Query Frame = 1
Query:   10 NLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTGN-NYANSEVVVQSTDSLDRLSGKA 753
            N+LEAAR    KRYFY+S+ACVYN+DLQLDP NPGLKE  AWPAKPQDTYGLEKLY EEM   Y +DF I+ R AR+HNVYGPRGTWKGGREKAPAAFCRKA+C+T +FEMWGDG+QTRSFMFIDDCVEG  +IM+ D   PLNLG++EM+ MN+FA +A+SFE K+LPI+H+PGPEGVRGRNSDNT+I+EKL WAPS+P+  GL+KTYFWI+D VE + A G        SE+VVQ TD LD L+  A
Sbjct:  124 NVLEAARCKGVKRYFYSSSACVYNDDLQLDPDNPGLKEAGAWPAKPQDTYGLEKLYAEEMGIVYGRDFGIKFRCARFHNVYGPRGTWKGGREKAPAAFCRKAVCATSEFEMWGDGKQTRSFMFIDDCVEGIQKIMDSDCEQPLNLGSDEMIDMNDFAKLALSFESKELPIKHIPGPEGVRGRNSDNTMIKEKLGWAPSIPVAVGLKKTYFWIKDMVEKDKAAGIDTAKLGVSEIVVQKTDELDELAKNA 372          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A7S3Y641_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y641_HETAK)

HSP 1 Score: 375 bits (962), Expect = 1.630e-122
Identity = 178/246 (72.36%), Postives = 206/246 (83.74%), Query Frame = 1
Query:   10 NLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKK-LPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTGNN-YANSEVVVQSTDSLDRL 741
            N+LEAAR+N A+RYFY+STACVYNED QLDP N GLKE  AWPAKPQDTYGLEKLYHEEM K YAKDF ++  IARYHNVYGP GTWKGGREKAPAAFCRKAI ST DFEMWGDG+QTRSFMFIDDCVEGSIRIM  +   PLNLGTEEM+SMN+FA +A+ F  K+ LPIRH+ GP+GVRGRNSDNT+IR++L WAPS+ I EGL KT+ WI  ++E E A G   + YA+S+VVVQ+TDSL+ +
Sbjct:  114 NVLEAARMNGAERYFYSSTACVYNEDYQLDPENTGLKEEYAWPAKPQDTYGLEKLYHEEMVKVYAKDFGLKIGIARYHNVYGPHGTWKGGREKAPAAFCRKAITSTTDFEMWGDGQQTRSFMFIDDCVEGSIRIMMSECEEPLNLGTEEMLSMNDFAKLALGFSGKEDLPIRHIEGPQGVRGRNSDNTMIRDRLGWAPSISIREGLEKTHAWINSKIEEEKASGVDVSVYASSQVVVQTTDSLEDM 359          
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Match: A0A7S2KLP0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLP0_9STRA)

HSP 1 Score: 361 bits (927), Expect = 4.630e-118
Identity = 167/247 (67.61%), Postives = 196/247 (79.35%), Query Frame = 1
Query:    1 LGTNLLEAARLNEAKRYFYASTACVYNEDLQLDPSNPGLKEGDAWPAKPQDTYGLEKLYHEEMCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDFEMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGIAMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTYFWIRDQVEGEAAKGTGNNYANSEVVVQSTDSLDRL 741
            +  N+LEAAR N+ K +FYAS+ACVYNE  Q DP NPGL E DAWPA+PQD YGLEKLY EEM  AY +DF I+ R+AR+HN+YGPRGTWKGGREKAPAAFCRKAI ST DFEMWGDG QTRSF FIDDCVEG +R+M  D  +P+NLGT EMV+M EFA IA+SFE+K LPIRHV GP GVRGRNS+N LI+EKL W PS+ I +GL+KTYFWI+ ++E E A G   NY+ SE+V Q  D+L  L
Sbjct:   58 ISMNMLEAARRNKVKNFFYASSACVYNEAKQEDPKNPGLVESDAWPARPQDMYGLEKLYSEEMALAYGRDFDIKIRLARFHNIYGPRGTWKGGREKAPAAFCRKAITSTVDFEMWGDGLQTRSFTFIDDCVEGVLRLMYSDCDVPINLGTTEMVNMIEFANIALSFEEKSLPIRHVKGPMGVRGRNSNNVLIKEKLGWEPSIKIADGLKKTYFWIKGEIEQEKAAGKAENYSTSEIVQQVDDTLMEL 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6297.13874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR35_ECTSI7.260e-16088.00Nad-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A7S2C9X7_9STRA3.750e-13378.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U1M3G1_9STRA1.370e-13275.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CJC0_9STRA2.640e-13174.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CQJ4_9STRA7.040e-13072.91Epimerase domain-containing protein n=2 Tax=Monodo... [more]
A0A6U4FV39_9STRA1.930e-12973.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J2X357_9STRA3.660e-12569.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YA16_AURAN1.890e-12369.48Epimerase domain-containing protein n=1 Tax=Aureoc... [more]
A0A7S3Y641_HETAK1.630e-12272.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2KLP0_9STRA4.630e-11867.61Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6297contigH-elongata_contig6297:80..4320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score349.0
Seed ortholog evalue1.5e-93
Seed eggNOG ortholog2880.D8LR35
Preferred nameGME
KEGG rclassRC00289,RC00403,RC01780
KEGG koko:K10046
KEGG ReactionR00889,R07672,R07673
KEGG Pathwayko00053,ko00520,ko01100,ko01110,map00053,map00520,map01100,map01110
KEGG ModuleM00114
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0016051,GO:0016053,GO:0016853,GO:0016854,GO:0016857,GO:0019752,GO:0019852,GO:0019853,GO:0036094,GO:0042364,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046364,GO:0046394,GO:0047918,GO:0048037,GO:0050662,GO:0051186,GO:0051188,GO:0051287,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
EC5.1.3.18
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGDP-mannose 3,5-epimerase
Ec32 orthologEc-06_004510.1
Exons5
Model size1765
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.2602265-UTR-H-elongata_contig6297:79..2291622931013.2602265-UTR-H-elongata_contig6297:79..229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6297 80..229 +
1691679662.1639671-UTR-H-elongata_contig6297:79..2291691679662.1639671-UTR-H-elongata_contig6297:79..229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6297 80..229 +
1622931013.2811935-UTR-H-elongata_contig6297:810..8461622931013.2811935-UTR-H-elongata_contig6297:810..846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6297 811..846 +
1691679662.177009-UTR-H-elongata_contig6297:810..8461691679662.177009-UTR-H-elongata_contig6297:810..846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6297 811..846 +
1622931013.373054-UTR-H-elongata_contig6297:3326..43201622931013.373054-UTR-H-elongata_contig6297:3326..4320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6297 3327..4320 +
1691679662.2200363-UTR-H-elongata_contig6297:3326..43201691679662.2200363-UTR-H-elongata_contig6297:3326..4320Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6297 3327..4320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.2977443-CDS-H-elongata_contig6297:846..9331622931013.2977443-CDS-H-elongata_contig6297:846..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 847..933 +
1691679662.1850238-CDS-H-elongata_contig6297:846..9331691679662.1850238-CDS-H-elongata_contig6297:846..933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 847..933 +
1622931013.3194096-CDS-H-elongata_contig6297:1761..19471622931013.3194096-CDS-H-elongata_contig6297:1761..1947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 1762..1947 +
1691679662.19273-CDS-H-elongata_contig6297:1761..19471691679662.19273-CDS-H-elongata_contig6297:1761..1947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 1762..1947 +
1622931013.3360953-CDS-H-elongata_contig6297:2332..25561622931013.3360953-CDS-H-elongata_contig6297:2332..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 2333..2556 +
1691679662.2009299-CDS-H-elongata_contig6297:2332..25561691679662.2009299-CDS-H-elongata_contig6297:2332..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 2333..2556 +
1622931013.3542218-CDS-H-elongata_contig6297:3238..33261622931013.3542218-CDS-H-elongata_contig6297:3238..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 3239..3326 +
1691679662.2096999-CDS-H-elongata_contig6297:3238..33261691679662.2096999-CDS-H-elongata_contig6297:3238..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6297 3239..3326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6297.13874.1prot_H-elongata_contig6297.13874.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6297 847..3326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6297.13874.1

>prot_H-elongata_contig6297.13874.1 ID=prot_H-elongata_contig6297.13874.1|Name=mRNA_H-elongata_contig6297.13874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MCKAYAKDFPIQTRIARYHNVYGPRGTWKGGREKAPAAFCRKAICSTKDF
EMWGDGEQTRSFMFIDDCVEGSIRIMEGDYALPLNLGTEEMVSMNEFAGI
AMSFEDKKLPIRHVPGPEGVRGRNSDNTLIREKLDWAPSVPIMEGLRKTY
FWIRDQVEGEAAKGTGNNYANSEVVVQSTDSLDRLSGKAAAIRR*
back to top

mRNA from alignment at H-elongata_contig6297:80..4320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6297.13874.1 ID=mRNA_H-elongata_contig6297.13874.1|Name=mRNA_H-elongata_contig6297.13874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4241bp|location=Sequence derived from alignment at H-elongata_contig6297:80..4320+ (Himanthalia elongata Himel1 dioecious)
CTAGGTACAAACCTACTGGAGGCGGCGCGGCTGAACGAGGCGAAGCGCTA CTTCTACGCCTCTACGGCCTGCGTATACAACGAAGACCTGCAACTCGATC CCAGCAACCCCGGGCTGAAAGAGGGAGACGCGTGGCCGGCAAAGCCTCAG GTGCGATCCGATCGATTACCACACGAGGTGCGCGCATTTGATCGGATTGG ATCGCGCGGGTCCTGGGCCTCCCCTCGCCTGCTGCTGCGGGTGCTGCTGC ATGCGGCCAAGGCGTCGTTAGTCGGGTAGTCGTTTTATCGTACACACTAC TATGAAATGCAGCACGTCCATTTGAGAGCGAGGCTGTCCAGTTTCTATTG TCCAAGAGTTGCAGGACGGACCGCTGGGAACAGGGGTTTCCTAATGAGCT ACGGCACACCGATGTGGTGCTTCATTTCCTGTGAAACCCGCCACGAGACT GGATAACACAAGACTCCAAATATTATGTGTATGCCATCGGACGGTACCGT ACTATTAATAAGGGAACTAACTGTAATGGATTTTAACTGCTACCGTAAAT TGTCGCTGTCGAAAAATTGTGGGCCGAACCCCGTTATATGGCTGTTAATC GCGACTATCGAGAGGGGGAGAACACCCCGTGCGCGGGGGGAAGGGACAGG TCGGTGCTATCGAGCTCACACTTTTCCCCCTTCTAAGCGTGAGCGCGTTG GCGTCTGTGGTGATCTTTGTCGTCGTTTCAGGATACCTACGGGTTGGAGA AGCTGTATCACGAGGAGATGTGCAAGGCGTACGCCAAGGACTTCCCGATC CAGACCAGAATCGCTCGGTATCACAACGTTTATGGCCCCCGAGGAACGTG GAAGGTGTGAGGAAATCGTAACGTCATTTATACCTGAGATATTGTTTTTA GTATTTGCGATTAGTTTTTTCGTCCCGATGTTGGTCTCCTGTTAATGCTA ACGTTGGTGTTAATCGTTGCCGGTAGGGGTCAGCATGAAGGGGAGAGGCA GTAGAGCGGGGTCTCTGCCGTCGCGGCGGTGCTTGAGTTGTGCTTTGGAC TCCTCGGGAACTATATCTTAGTTTATCTTATCGGTGAGACGGAGTAGTTG GAGTGCCGCAGCAGTTCTTCGTCTCCTACTCAGCAGTGTCTTTCCGTGGT TCTTAGTGGCAGGAGCCAGGGCACCGCAGCACAACGGGAAAATTAGTTTG AGATGCCAGGGTGGTACGTTTGTTCCTTGGTGCTCTGTGGCACGTACAAG CGAAACAGCCGCTCCCCGGGTTTGGCTCTGTGCGTAGTTGTTCGACCCCT GTTACTGCGATCCTCGCGAGGCACGCCCTCGACGCGTCTAGTCTCGAGTC GGGTCGGATCGGACCTCTTGTGCGTCGGTGTTGAGAGGGTAGGGGGGAGC AAACCCGTTTTCACTTCTTCTGTCTGATTTGAACGGGCTGTCCGGTTTTA AAGGGTGTAACACCATTTTTGCGCTTTTTTTTGTGTGTTGCACTGTACCC TAATATATTGTACCTGGTATTGCGGATATTATGGATTGTAGACAACGCCC AACACAAACCTCGATGAGGCGTAGTCGTTCGATGCTCGTTGCTTAAAGTC TCTGGTGGGAGTCCCCGCCATGTTTTTGGCCCGCCGAAACGAATCGGAGT GAAACGAAACGAAATGAAATGGACCGATGCAGGGGGGGCGTGAGAAGGCT CCAGCAGCGTTCTGCCGAAAAGCGATCTGCTCGACGAAGGACTTTGAGAT GTGGGGCGACGGCGAGCAGACGCGGTCGTTCATGTTTATTGATGACTGCG TTGAAGGCTCGATCCGCATCATGGAAGGGGATTACGCGCTCCCGCTCAAC CTCGGCACGGAGGAGATGGTGAGCCGTGTTATGTTTGATCCCTTTCCCCA CCCACCCCTTCGAAATGAGCTCAACTCATTCGCGTTCCTTTTGCAAAAAG CAAATAATTTTATAGCATGATTAAAAATAATAACAAAAATAAACAAAACA GAATGCGTATGTTTTTTTTTTACTGTGTTCAAAATGTGTCTAGTAAATAG TACCTATACGCTATACGTCACCGGTATATATATCAATTTATCTATCGATA TATAGATATATTTGTATATATGATACGTGATACGTGGTAAGAGAATCGTG CTCCATCAACTCTGCACCGATACTGTAGCTCTAGAGCTGTACCCTACGAA TATGCGCTGGTAACTCGATGACGATGACGTCATCGTGGGGTGACGGGAGA AAGGTTTCAATGAACGAGTTCGCGGGGATCGCCATGAGCTTCGAGGACAA GAAGCTGCCCATCAGGCACGTGCCAGGCCCCGAGGGAGTGAGGGGAAGAA ACAGCGACAACACGCTCATCAGGGAGAAGCTCGACTGGGCCCCTTCCGTG CCGATCATGGAAGGACTCCGTAAGACGTACTTTTGGATCAGGGATCAAGT CGAGGGGGAAGCAGCTAAAGGGACCGGGTGAGAGGACACCAGACACGAGC GCATGCATCCGCAAACAAACAAACACACACATACACACGTAGATGGGAGA GCGTTGGTCCGATAGGGGCCGACCGAAGATATATAGTATATAGCGAACAA GGAAGCAGAAAGGGAAGCGCTAGGTATTGAGGGCTTAGATATGACTTGTA GAAGAAATATGTCTCCCTTGTCACGTCTGATCAGATGTTTTTGTATCAAA TATTATCGATCCCTCATTGGGAGGATTAGTGTGGGTAGGCTATGATGACT AGCATGACAGGCCGGATTGCGCGGTTTTGTGCAATGTAATAATAAATACA CACACACGCATACATACATACAAAAGGTGCCAGTCCAAACGAGGGTTTTT GCTCTACCGCGCTCGAAACACGACACCATAAGGCAGAGCGGGACCGGCGC AGCTGTTCCCTCGACTCAATGTAAATAACTGCGATGTTCCATCAGACACT CTTATCTCACTGGCGAGTATAGGGCCTCTGCGGGTATCTGAGGGAACCAT CGAGTATAGGGCCTCGCGGCGCTTGCAATGTAGCTCTCGGCATGGAGAGC ACAGAACACGAAAATATTGAAATATTGTCAAAATAAAGGAAGGACGGCGA TTGTCGTGCTACTGACAGCCCCGCCTCGCGTTCCCGTCGGATTTTTTTTC GGAACCCAGGAATAACTACGCCAACTCGGAGGTGGTGGTGCAGTCGACGG ATTCGCTCGACCGACTGTCCGGCAAAGCCGCGGCCATTAGACGGTGAAAG TCAACCTCATCGCCGAATCAGGGGAGGGGAGGGAAGATCGACCCTCAATC TCTCTTTTTTAGCTTTGATTTTAGTAGGTGTCCACCGCGGTGAACAGCCC GCTGGCCTCGTCGGCGAGGCGGAGTCCTTCTTGTGGCCTCGACTCGAGTG GGCGATCTTTGGATATGTGCCACTAGGGTAAAAGATTGCTTTTTTTTTAT AGACGGTTAGTTCTCTAAAAAACTCCGACCCTTTTTGTGGGATCAAGGGG GCTCCGTTCTCAGTTCCGCTGGCGGGGGTGGATACGCAGACGCGGGTAGA AATAACAGACAAGGCAAGACAGCAGACAGACGGTTGACGATTGACGTGTA GGCTTTGGTCCTAGGGGAGGCGTTTGAAAAGTGAAGATACAGTACCAATA ATATACTGGTTAGAGTATAGCGTGCTGCTCGAACGGGTGAAAGTGACTAA TAATAATAATATTAGTGGAAAACATCGTACGAACCGGAAGATTATTGGCT GCCTGAACAGAAAGGCGTAAGTACAGCTGTCTCTGTTGCCCTTTAGAGCA GATGCGACGGTGCTGGGACGTGGTCCGCTACTACACACAACAGAGAGTCG GATTATAACTGCGCGCTCGGTGCGTCCTGTTCTGTAGCTCGGCGAGGCTC TCGACAACCCCCCACTCGTGCGAGATACGTGTTTTTCTGATACATAACAT TGCGCGAAAACGTAACGCCGTTTGTTGTGGCAAGCAGCTGCGCCTCTCTT TTTTTTCTGTCCTTTTGATTTTATAGATCATCCCCGTCACACCCAACGCT CTGTGAGTTTGGCTCGTCGCCTCGACTGTTTTTCGCTCCAGATTTCCCAA GCTACGGGTCCCGTGTAACGCGCGCGGCCTTGTTGACAAGGCGTGGAAGA GATTGAGGACGCTAGGTTGAGCGAATAGATAGCACAGGGTATTTGTTTTT TTACTTTATTTTGCGCAAAGTACAGACGAAGGAGGGAAGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6297:80..4320+

>mRNA_H-elongata_contig6297.13874.1 ID=mRNA_H-elongata_contig6297.13874.1|Name=mRNA_H-elongata_contig6297.13874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig6297:80..4320+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAAGGCGTACGCCAAGGACTTCCCGATCCAGACCAGAATCGCTCG
GTATCACAACGTTTATGGCCCCCGAGGAACGTGGAAGATGTGCAAGGCGT
ACGCCAAGGACTTCCCGATCCAGACCAGAATCGCTCGGTATCACAACGTT
TATGGCCCCCGAGGAACGTGGAAGGGGGGGCGTGAGAAGGCTCCAGCAGC
GTTCTGCCGAAAAGCGATCTGCTCGACGAAGGACTTTGAGATGTGGGGCG
ACGGCGAGCAGACGCGGTCGTTCATGTTTATTGATGACTGCGTTGAAGGC
TCGATCCGCATCATGGAAGGGGATTACGCGCTCCCGCTCAACCTCGGCAC
GGAGGAGATGGGGGGGCGTGAGAAGGCTCCAGCAGCGTTCTGCCGAAAAG
CGATCTGCTCGACGAAGGACTTTGAGATGTGGGGCGACGGCGAGCAGACG
CGGTCGTTCATGTTTATTGATGACTGCGTTGAAGGCTCGATCCGCATCAT
GGAAGGGGATTACGCGCTCCCGCTCAACCTCGGCACGGAGGAGATGGTTT
CAATGAACGAGTTCGCGGGGATCGCCATGAGCTTCGAGGACAAGAAGCTG
CCCATCAGGCACGTGCCAGGCCCCGAGGGAGTGAGGGGAAGAAACAGCGA
CAACACGCTCATCAGGGAGAAGCTCGACTGGGCCCCTTCCGTGCCGATCA
TGGAAGGACTCCGTAAGACGTACTTTTGGATCAGGGATCAAGTCGAGGGG
GAAGCAGCTAAAGGGACCGGGTTTCAATGAACGAGTTCGCGGGGATCGCC
ATGAGCTTCGAGGACAAGAAGCTGCCCATCAGGCACGTGCCAGGCCCCGA
GGGAGTGAGGGGAAGAAACAGCGACAACACGCTCATCAGGGAGAAGCTCG
ACTGGGCCCCTTCCGTGCCGATCATGGAAGGACTCCGTAAGACGTACTTT
TGGATCAGGGATCAAGTCGAGGGGGAAGCAGCTAAAGGGACCGGGAATAA
CTACGCCAACTCGGAGGTGGTGGTGCAGTCGACGGATTCGCTCGACCGAC
TGTCCGGCAAAGCCGCGGCCATTAGACGGTGAGAATAACTACGCCAACTC
GGAGGTGGTGGTGCAGTCGACGGATTCGCTCGACCGACTGTCCGGCAAAG
CCGCGGCCATTAGACGGTGA
back to top