mRNA_H-elongata_contig62937.13872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62937.13872.1
Unique NamemRNA_H-elongata_contig62937.13872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62937.13872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62937contigH-elongata_contig62937:38..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.04737-CDS-H-elongata_contig62937:37..4751622931013.04737-CDS-H-elongata_contig62937:37..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62937 38..475 +
1691679662.110735-CDS-H-elongata_contig62937:37..4751691679662.110735-CDS-H-elongata_contig62937:37..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62937 38..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62937.13872.1prot_H-elongata_contig62937.13872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62937 38..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62937.13872.1

>prot_H-elongata_contig62937.13872.1 ID=prot_H-elongata_contig62937.13872.1|Name=mRNA_H-elongata_contig62937.13872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
NGLLAVRVATDHDWRALECLRANGLDDGVCVSRTTPGSDRTKNLLEIAGT
EVVVGDACRVTEEGETRDISPTAKTAISIVRTFVGSRALALVLEGATNLL
RLTDWKERALPTLYHYGCCVESVEMTGSDAGAPTTKGRTFVVAVRE
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mRNA from alignment at H-elongata_contig62937:38..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62937.13872.1 ID=mRNA_H-elongata_contig62937.13872.1|Name=mRNA_H-elongata_contig62937.13872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at H-elongata_contig62937:38..475+ (Himanthalia elongata Himel1 dioecious)
AACGGGCTCCTAGCGGTCAGGGTCGCGACGGACCACGACTGGAGAGCCCT
GGAGTGCCTCCGGGCCAACGGTCTAGACGACGGGGTATGTGTGTCAAGGA
CAACGCCGGGATCAGATAGGACCAAAAACCTGCTCGAGATAGCGGGAACG
GAGGTGGTTGTGGGCGACGCCTGCCGGGTCACGGAAGAGGGAGAAACCCG
GGACATCAGTCCGACAGCCAAAACGGCGATCAGTATTGTCCGGACGTTCG
TCGGATCCAGAGCGCTCGCCCTGGTCCTGGAAGGTGCTACAAATCTCCTG
CGCTTAACAGACTGGAAGGAGCGAGCCCTCCCCACCCTCTACCACTACGG
CTGCTGCGTCGAGTCCGTGGAGATGACCGGGAGCGACGCGGGCGCCCCTA
CGACAAAGGGGAGGACCTTTGTTGTTGCAGTACGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig62937:38..475+

>mRNA_H-elongata_contig62937.13872.1 ID=mRNA_H-elongata_contig62937.13872.1|Name=mRNA_H-elongata_contig62937.13872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig62937:38..475+ (Himanthalia elongata Himel1 dioecious)
AACGGGCTCCTAGCGGTCAGGGTCGCGACGGACCACGACTGGAGAGCCCT
GGAGTGCCTCCGGGCCAACGGTCTAGACGACGGGGTATGTGTGTCAAGGA
CAACGCCGGGATCAGATAGGACCAAAAACCTGCTCGAGATAGCGGGAACG
GAGGTGGTTGTGGGCGACGCCTGCCGGGTCACGGAAGAGGGAGAAACCCG
GGACATCAGTCCGACAGCCAAAACGGCGATCAGTATTGTCCGGACGTTCG
TCGGATCCAGAGCGCTCGCCCTGGTCCTGGAAGGTGCTACAAATCTCCTG
CGCTTAACAGACTGGAAGGAGCGAGCCCTCCCCACCCTCTACCACTACGG
CTGCTGCGTCGAGTCCGTGGAGATGACCGGGAGCGACGCGGGCGCCCCTA
CGACAAAGGGGAGGACCTTTGTTGTTGCAGTACGAGAGAACGGGCTCCTA
GCGGTCAGGGTCGCGACGGACCACGACTGGAGAGCCCTGGAGTGCCTCCG
GGCCAACGGTCTAGACGACGGGGTATGTGTGTCAAGGACAACGCCGGGAT
CAGATAGGACCAAAAACCTGCTCGAGATAGCGGGAACGGAGGTGGTTGTG
GGCGACGCCTGCCGGGTCACGGAAGAGGGAGAAACCCGGGACATCAGTCC
GACAGCCAAAACGGCGATCAGTATTGTCCGGACGTTCGTCGGATCCAGAG
CGCTCGCCCTGGTCCTGGAAGGTGCTACAAATCTCCTGCGCTTAACAGAC
TGGAAGGAGCGAGCCCTCCCCACCCTCTACCACTACGGCTGCTGCGTCGA
GTCCGTGGAGATGACCGGGAGCGACGCGGGCGCCCCTACGACAAAGGGGA
GGACCTTTGTTGTTGCAGTACGAGAG
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