mRNA_H-elongata_contig62933.13871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62933.13871.1
Unique NamemRNA_H-elongata_contig62933.13871.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: D8LEA9_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEA9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 3.640e-35
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 GRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVSVR 222
            GRGQVSIGAELSVAVGP+GRTGAGNVSVAAEG+AHAYSYSHSRGLFAGLSLEGGVIV+R DVNRKFYGR+VSVR
Sbjct:  435 GRGQVSIGAELSVAVGPVGRTGAGNVSVAAEGVAHAYSYSHSRGLFAGLSLEGGVIVSRPDVNRKFYGRQVSVR 508          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A485KLR6_9STRA (Aste57867_8862 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLR6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.070e-21
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 RGQVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVS 216
            +GQV++GAEL VA GPLGR  AG++     G+A  YSYSHS+GLF G+SLEG VIVAR DVNR+FYGR+++
Sbjct:  254 QGQVNLGAELGVAAGPLGRVAAGSMEAGPGGIAPCYSYSHSKGLFIGISLEGSVIVARPDVNREFYGRDIT 324          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A8K1C966_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C966_PYTOL)

HSP 1 Score: 92.8 bits (229), Expect = 1.730e-20
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    4 RGQVSIGAELSVAVGPLGRTGAGNVSVAAE-GLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREV 213
            +GQV++GAEL VA GPLGRT AG+V  +A+  +A  YSYSHS+GLFAG+SLEG VI+ R D+NR FYGREV
Sbjct:  256 KGQVNLGAELGVAAGPLGRTAAGSVEASADLDIAPCYSYSHSKGLFAGISLEGSVILTRPDINRAFYGREV 326          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A024UDI5_9STRA (FYVE-type domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UDI5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.180e-19
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    4 RGQVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVS 216
            +GQV++GAEL VA GP+GR  AG V     G+A  YSYSHS+GLF G+SLEG VI+AR DVNR+FYG++V+
Sbjct:  255 QGQVNLGAELGVAAGPVGRVAAGAVEAGPGGIAPCYSYSHSKGLFIGISLEGSVIMARPDVNREFYGKDVT 325          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A662Y0A5_9STRA (Ysc84 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0A5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-19
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 GQVSIGAELSVAVGPLGRTGAGNVSVAAE-GLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVSV 219
            GQV++GAEL V+ GP+GR  +G +  +A   +A  YSYSHS+GLFAG+SLEG VI++RSD+NR FYGR+++V
Sbjct:   64 GQVNLGAELGVSAGPVGRVASGALEASASMDIAPCYSYSHSKGLFAGISLEGSVILSRSDINRAFYGRQIAV 135          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A835YJX3_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.040e-19
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 GRGQVSIGAELSVAVGPLGRTGAGNVSVAAEG-LAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVSVR 222
            G GQ+S+GA + +A GP+GR+GAG V++  +G +A   SYSHSRGLFAG+SLEG VI AR DVNR FYG++V+ +
Sbjct:  219 GAGQMSLGAGIGMAAGPIGRSGAGGVTIGTDGDVAPVLSYSHSRGLFAGISLEGAVIAARPDVNRAFYGKDVTAK 293          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A2D4CAV3_PYTIN (FYVE-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAV3_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.540e-19
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   10 QVSIGAELSVAVGPLGRTGAGNVSVAAE-GLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVS 216
            QVS+GAEL VA GP+GRT AG+V  +A+  +A  YSYSHS+GLFAG+SLEG VI+ R D+NR FYGR+++
Sbjct:  284 QVSLGAELGVAAGPIGRTAAGSVEASADLDIAPCYSYSHSKGLFAGISLEGSVILTRPDINRAFYGRQIT 353          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A024GDQ2_9STRA (Ysc84 domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GDQ2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.330e-19
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   10 QVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVS 216
            QV++GAEL VA G +GR  +G++  + +G+A  YSYSHSRGLFAG+SLEG VI++R D+N  FYGRE++
Sbjct:  162 QVNLGAELGVATGLVGRVASGSLGTSVDGIAPCYSYSHSRGLFAGISLEGAVIISRPDINHTFYGREIT 230          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A1V9Z795_9STRA (FYVE-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z795_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.870e-19
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 RGQVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGREVS 216
            +GQV++GAEL VA GPLGR  AG +     G+A  YSYSHS+GLF G+S+EG ++VAR DVN +FYG+EV+
Sbjct:  240 QGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAPCYSYSHSKGLFIGISIEGSIVVARPDVNMEFYGKEVT 310          
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Match: A0A7S1YWM4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWM4_TRICV)

HSP 1 Score: 85.9 bits (211), Expect = 6.700e-19
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    7 GQVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLSLEGGVIVARSDVNRKFYGR 207
            G V++GAE+ VAVGPLGR   GN+S    G+A AYSY+HSRG FAG+SLEG V+  R+DVN +FYGR
Sbjct:  149 GAVNLGAEMGVAVGPLGRGATGNLSGGRGGVAPAYSYAHSRGFFAGISLEGSVVTPRADVNARFYGR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62933.13871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEA9_ECTSI3.640e-3593.24FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A485KLR6_9STRA9.070e-2163.38Aste57867_8862 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1C966_PYTOL1.730e-2066.20Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024UDI5_9STRA1.180e-1961.97FYVE-type domain-containing protein n=3 Tax=Aphano... [more]
A0A662Y0A5_9STRA1.370e-1958.33Ysc84 domain-containing protein n=2 Tax=Nothophyto... [more]
A0A835YJX3_9STRA2.040e-1958.67FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A2D4CAV3_PYTIN2.540e-1962.86FYVE-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A024GDQ2_9STRA4.330e-1957.97Ysc84 domain-containing protein n=2 Tax=Albugo can... [more]
A0A1V9Z795_9STRA4.870e-1959.15FYVE-type domain-containing protein n=1 Tax=Achlya... [more]
A0A7S1YWM4_TRICV6.700e-1962.69Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62933contigH-elongata_contig62933:368..906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.7e-29
Seed eggNOG ortholog2880.D8LEA9
KEGG koko:K20523
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.9689014-CDS-H-elongata_contig62933:367..4831622931012.9689014-CDS-H-elongata_contig62933:367..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62933 368..483 -
1691679662.0902264-CDS-H-elongata_contig62933:367..4831691679662.0902264-CDS-H-elongata_contig62933:367..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62933 368..483 -
1622931012.990694-CDS-H-elongata_contig62933:791..9061622931012.990694-CDS-H-elongata_contig62933:791..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62933 792..906 -
1691679662.1021771-CDS-H-elongata_contig62933:791..9061691679662.1021771-CDS-H-elongata_contig62933:791..906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62933 792..906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62933.13871.1prot_H-elongata_contig62933.13871.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62933 368..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62933.13871.1

>prot_H-elongata_contig62933.13871.1 ID=prot_H-elongata_contig62933.13871.1|Name=mRNA_H-elongata_contig62933.13871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
GRGQVSIGAELSVAVGPLGRTGAGNVSVAAEGLAHAYSYSHSRGLFAGLS
LEGGVIVARSDVNRKFYGREVSVRFE*
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mRNA from alignment at H-elongata_contig62933:368..906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62933.13871.1 ID=mRNA_H-elongata_contig62933.13871.1|Name=mRNA_H-elongata_contig62933.13871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=539bp|location=Sequence derived from alignment at H-elongata_contig62933:368..906- (Himanthalia elongata Himel1 dioecious)
GGAAGAGGGCAAGTGTCCATCGGTGCGGAACTCAGCGTGGCGGTGGGACC CCTGGGACGAACCGGGGCCGGCAACGTTAGCGTCGCGGCAGAGGGCCTCG CTCACGCCTACTCGTGTGAGTCGTCGAATCGCGCTGCGCCCGAGTGGTCC TTTTCGCGCAGCCGCACGAGGTGGCTTGGCCCGCTCCAGGACAATGTTGC GGCACATTTCCAATATATTTTGTTTCATTCGGTTTCATTTAGTTTTGTAG AGAGCAACATGCAGCAGGAGGGGCGATTTGAGCTCGTTTTGGTATTTTCT CGCTTCTGTCGATAAGGTCTGGGGCCTCAACGGGCACGGAGTCGTCGGTA GACTTGCCCCGTAACGCTCTTACCCTCGCCATAAACGTGTTGCTGTCGGG CTCCCTCCTCTGCCCGTTCGCAGACAGTCACAGCCGTGGTCTCTTTGCCG GCCTCAGCCTGGAGGGAGGCGTGATCGTGGCGAGGTCTGACGTCAATCGA AAGTTCTACGGGCGGGAGGTCTCCGTCAGGTTTGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig62933:368..906-

>mRNA_H-elongata_contig62933.13871.1 ID=mRNA_H-elongata_contig62933.13871.1|Name=mRNA_H-elongata_contig62933.13871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig62933:368..906- (Himanthalia elongata Himel1 dioecious)
GGAAGAGGGCAAGTGTCCATCGGTGCGGAACTCAGCGTGGCGGTGGGACC
CCTGGGACGAACCGGGGCCGGCAACGTTAGCGTCGCGGCAGAGGGCCTCG
CTCACGCCTACTCGTGGAAGAGGGCAAGTGTCCATCGGTGCGGAACTCAG
CGTGGCGGTGGGACCCCTGGGACGAACCGGGGCCGGCAACGTTAGCGTCG
CGGCAGAGGGCCTCGCTCACGCCTACTCGTACAGTCACAGCCGTGGTCTC
TTTGCCGGCCTCAGCCTGGAGGGAGGCGTGATCGTGGCGAGGTCTGACGT
CAATCGAAAGTTCTACGGGCGGGAGGTCTCCGTCAGGTTTGAATAAACAG
TCACAGCCGTGGTCTCTTTGCCGGCCTCAGCCTGGAGGGAGGCGTGATCG
TGGCGAGGTCTGACGTCAATCGAAAGTTCTACGGGCGGGAGGTCTCCGTC
AGGTTTGAATAA
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