mRNA_H-elongata_contig62893.13868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62893.13868.1
Unique NamemRNA_H-elongata_contig62893.13868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig62893.13868.1 vs. uniprot
Match: A0A6H5JAD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.750e-20
Identity = 79/182 (43.41%), Postives = 105/182 (57.69%), Query Frame = 3 
Query:   51 ELRLIAIDGAGDGL--------------RPWLSAESCLYLAAVAVSAGNGAES-ARLLDATVAASAAAVQDRR---TSVENSTWLG-ICGRGSSWRELSLRCLTEERLEYPGGGRRDPKAA----LRRVDSAIAAYEDSSDARGAPAASSIF-ELRGSLELSRAPLLLKLG--RPDDARAAI 518
            ELR IA  GA D                RPWL +E+CL+LA +A+ AG+ +++ A L  A  +A AA +   R   T    + W G + G GS WRELSLRCL +ERL   GG   DP AA    L RVD+A+AA+++SS  RG P     + ++ G L L+RA LLLKLG  R ++ARAA+
Sbjct:  407 ELRRIARGGAQDEAGGDNADGAAAASPRRPWLKSEACLHLAGLALWAGDISQADAHLKTAAESAVAARIPPHRGSSTKQAGAPWAGALSGPGSDWRELSLRCLVDERLGDGGG---DPAAAAALGLGRVDAAMAAFDESSRLRGKPDGEGDYADVLGRLGLARASLLLKLGGGRLEEARAAV 585
[Close]
BLAST of mRNA_H-elongata_contig62893.13868.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.150e-18
Identity = 77/183 (42.08%), Postives = 104/183 (56.83%), Query Frame = 3 
Query:   51 ELRLIAIDGAGDGL--------------RPWLSAESCLYLAAVAVSAGNGAESARLLDATVAASAAAVQ---DRRTSVENS--TWLG-ICGRGSSWRELSLRCLTEERLEYPGGGRRDPKAA----LRRVDSAIAAYEDSSDARGAPAASSIF-ELRGSLELSRAPLLLKLG--RPDDARAAI 518
            ELR IA  GA D                RPWL +E+CL+LA +A+ AG+  ++   L  T A SA A +    RR+S + +   W G + G GS WRELSLRCL +ERL   GG   DP AA    L RVD+A+ A+++S   RG P     + ++ G L L+RA LLLKLG  R ++AR+A+
Sbjct:  232 ELRRIARGGAQDEAGGDKTDGAAAASPRRPWLKSEACLHLAGLALWAGDVYQADAFLK-TAAGSAVAARIPPHRRSSTKQAGAPWAGALSGPGSDWRELSLRCLVDERLGDGGG---DPAAAAALGLGRVDAAMTAFDESFRLRGPPDGEGDYADVLGRLGLARASLLLKLGGGRLEEARSAV 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62893.13868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAD5_9PHAE4.750e-2043.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI5.150e-1842.08Similar to Tetratricopeptide repeat protein 37 (TP... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62893contigH-elongata_contig62893:1576..2162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue4.8e-17
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.6984122-UTR-H-elongata_contig62893:1575..15891622931012.6984122-UTR-H-elongata_contig62893:1575..1589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62893 1576..1589 +
1691679661.9859838-UTR-H-elongata_contig62893:1575..15891691679661.9859838-UTR-H-elongata_contig62893:1575..1589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62893 1576..1589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.7151754-CDS-H-elongata_contig62893:1589..21621622931012.7151754-CDS-H-elongata_contig62893:1589..2162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62893 1590..2162 +
1691679661.9999528-CDS-H-elongata_contig62893:1589..21621691679661.9999528-CDS-H-elongata_contig62893:1589..2162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62893 1590..2162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62893.13868.1prot_H-elongata_contig62893.13868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62893 1590..2162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62893.13868.1

>prot_H-elongata_contig62893.13868.1 ID=prot_H-elongata_contig62893.13868.1|Name=mRNA_H-elongata_contig62893.13868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MSSAYWPPLDPEELRLIAIDGAGDGLRPWLSAESCLYLAAVAVSAGNGAE
SARLLDATVAASAAAVQDRRTSVENSTWLGICGRGSSWRELSLRCLTEER
LEYPGGGRRDPKAALRRVDSAIAAYEDSSDARGAPAASSIFELRGSLELS
RAPLLLKLGRPDDARAAIAIVTEAEKLSASVRRDEEGVSEA
back to top

mRNA from alignment at H-elongata_contig62893:1576..2162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62893.13868.1 ID=mRNA_H-elongata_contig62893.13868.1|Name=mRNA_H-elongata_contig62893.13868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=587bp|location=Sequence derived from alignment at H-elongata_contig62893:1576..2162+ (Himanthalia elongata Himel1 dioecious)
ACGCGGTGTTTCTCATGTCGTCGGCGTACTGGCCACCGCTCGACCCTGAG
GAGCTCCGACTCATCGCTATAGACGGCGCAGGCGATGGCCTCCGCCCCTG
GCTTTCCGCCGAGTCTTGCCTGTACCTCGCCGCTGTCGCCGTGTCCGCGG
GCAACGGTGCGGAGAGTGCTAGGCTCTTAGACGCGACGGTAGCAGCATCA
GCGGCGGCAGTCCAAGATAGGCGCACGTCGGTCGAAAATTCCACGTGGCT
GGGAATATGCGGCCGAGGAAGCAGCTGGAGGGAGCTGTCGCTACGCTGCC
TGACCGAAGAGCGGCTGGAGTACCCTGGTGGGGGTCGAAGAGATCCCAAG
GCCGCGCTGAGACGCGTTGATTCGGCGATCGCGGCGTACGAAGACTCTAG
CGACGCGCGCGGTGCCCCAGCGGCATCTTCGATCTTCGAACTCCGGGGGA
GTCTCGAGCTCTCCCGGGCACCTCTACTGCTGAAGCTTGGTCGCCCAGAC
GATGCACGCGCCGCTATCGCGATCGTGACTGAGGCTGAAAAGTTGTCGGC
TTCTGTTAGACGAGACGAAGAAGGGGTGTCTGAGGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig62893:1576..2162+

>mRNA_H-elongata_contig62893.13868.1 ID=mRNA_H-elongata_contig62893.13868.1|Name=mRNA_H-elongata_contig62893.13868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig62893:1576..2162+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTCGGCGTACTGGCCACCGCTCGACCCTGAGGAGCTCCGACTCAT
CGCTATAGACGGCGCAGGCGATGGCCTCCGCCCCTGGCTTTCCGCCGAGT
CTTGCCTGTACCTCGCCGCTGTCGCCGTGTCCGCGGGCAACGGTGCGGAG
AGTGCTAGGCTCTTAGACGCGACGGTAGCAGCATCAGCGGCGGCAGTCCA
AGATAGGCGCACGTCGGTCGAAAATTCCACGTGGCTGGGAATATGCGGCC
GAGGAAGCAGCTGGAGGGAGCTGTCGCTACGCTGCCTGACCGAAGAGCGG
CTGGAGTACCCTGGTGGGGGTCGAAGAGATCCCAAGGCCGCGCTGAGACG
CGTTGATTCGGCGATCGCGGCGTACGAAGACTCTAGCGACGCGCGCGGTG
CCCCAGCGGCATCTTCGATCTTCGAACTCCGGGGGAGTCTCGAGCTCTCC
CGGGCACCTCTACTGCTGAAGCTTGGTCGCCCAGACGATGCACGCGCCGC
TATCGCGATCGTGACTGAGGCTGAAAAGTTGTCGGCTTCTGTTAGACGAG
ACGAAGAAGGGGTGTCTGAGGCGATGTCGTCGGCGTACTGGCCACCGCTC
GACCCTGAGGAGCTCCGACTCATCGCTATAGACGGCGCAGGCGATGGCCT
CCGCCCCTGGCTTTCCGCCGAGTCTTGCCTGTACCTCGCCGCTGTCGCCG
TGTCCGCGGGCAACGGTGCGGAGAGTGCTAGGCTCTTAGACGCGACGGTA
GCAGCATCAGCGGCGGCAGTCCAAGATAGGCGCACGTCGGTCGAAAATTC
CACGTGGCTGGGAATATGCGGCCGAGGAAGCAGCTGGAGGGAGCTGTCGC
TACGCTGCCTGACCGAAGAGCGGCTGGAGTACCCTGGTGGGGGTCGAAGA
GATCCCAAGGCCGCGCTGAGACGCGTTGATTCGGCGATCGCGGCGTACGA
AGACTCTAGCGACGCGCGCGGTGCCCCAGCGGCATCTTCGATCTTCGAAC
TCCGGGGGAGTCTCGAGCTCTCCCGGGCACCTCTACTGCTGAAGCTTGGT
CGCCCAGACGATGCACGCGCCGCTATCGCGATCGTGACTGAGGCTGAAAA
GTTGTCGGCTTCTGTTAGACGAGACGAAGAAGGGGTGTCTGAGGCG
back to top