mRNA_H-elongata_contig6287.13863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6287.13863.1
Unique NamemRNA_H-elongata_contig6287.13863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 8.160e-18
Identity = 57/147 (38.78%), Postives = 72/147 (48.98%), Query Frame = 1 
Query:   73 TCSDGTPGLEAEEGQVCCSAGCDACGGPLCSTSGLPDYGSSDCCVITIMNSGVMCETTGEAPCILEVGGPVSITPSPTDVLVASIVSSETSSEILV------------TCSNGITGVESSNGEACCVAACGQCGGLGCSSVGLPDYG 477
            TCS+G PG++++    CC A C ACGG  C   G    G+ +CCV  I+  G  C    EAPC ++   P    PSP  +  A                         TCS GI G+ESS+G  CC   C  CGG GCS+VG+PDYG
Sbjct: 1272 TCSNGIPGIQSDN--ACCLAECGACGGSDCDEFG-GGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPA---PSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYG 1412
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BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.420e-8
Identity = 43/116 (37.07%), Postives = 53/116 (45.69%), Query Frame = 1 
Query:  109 EGQVCCSAGCDACGGPLCSTSGLPDYGSSDCCVITIMNSGVMCETTGEAPCILEVGGPVSITPSPTDVLVASIVSSETSSEILVTCSNGITGVESSNGEACCVAACGQCGGLGCSS 456
            +G  CCSAGC+ CGG  CS  G      +DCC   I+ +G  C   G APC+LE G     +P+P                     S G  G+    G+ CC A CG CGG GC S
Sbjct:   26 KGIYCCSAGCEECGGSGCSDRG-DGLTGADCCTSDILAAGKAC---GSAPCLLEEGS----SPTPAS-------------------SGGCDGIL--QGDVCCSAECGTCGGSGCGS 112
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BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.150e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  355 LVTCSNGITGVESSNGEACCVAACGQCGGLGCSSVGLPDYGA 480
            +V CS GI G+ESS+G  CC   C QCGG GCS+VGLP+YGA
Sbjct:  609 VVVCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGA 650
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BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.950e-7
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:  355 LVTCSNGITGVESSNGEACCVAACGQCGGLGCSSVGLPDYGA 480
            ++ CS GI G+ESS+G  CC   C QCGG GCS+VGLP+YGA
Sbjct:  673 VIVCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGA 714
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BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 6.630e-5
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  364 CSNGITGVESSNGEACCVAACGQCGGLGCS 453
            CSNG+ G+ESSNG+ACC   CG CGG+GCS
Sbjct:  107 CSNGVYGIESSNGKACCALTCGSCGGVGCS 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6287.13863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJ68_ECTSI8.160e-1838.78WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWE8_ECTSI4.420e-837.07Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JJ37_9PHAE1.150e-764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI2.950e-761.90EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FHN7_ECTSI6.630e-570.00von Willebrand A domain containing protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6287contigH-elongata_contig6287:7353..8939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size482
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6287.13863.1prot_H-elongata_contig6287.13863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6287 7353..8939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.1308706-CDS-H-elongata_contig6287:7352..75611622931012.1308706-CDS-H-elongata_contig6287:7352..7561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 7353..7561 -
1691679661.7647142-CDS-H-elongata_contig6287:7352..75611691679661.7647142-CDS-H-elongata_contig6287:7352..7561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 7353..7561 -
1622931012.1519196-CDS-H-elongata_contig6287:8062..82661622931012.1519196-CDS-H-elongata_contig6287:8062..8266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 8063..8266 -
1691679661.775156-CDS-H-elongata_contig6287:8062..82661691679661.775156-CDS-H-elongata_contig6287:8062..8266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 8063..8266 -
1622931012.1734304-CDS-H-elongata_contig6287:8872..89391622931012.1734304-CDS-H-elongata_contig6287:8872..8939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 8873..8939 -
1691679661.7890744-CDS-H-elongata_contig6287:8872..89391691679661.7890744-CDS-H-elongata_contig6287:8872..8939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 8873..8939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6287.13863.1

>prot_H-elongata_contig6287.13863.1 ID=prot_H-elongata_contig6287.13863.1|Name=mRNA_H-elongata_contig6287.13863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
EVELSTAAPTSAPTTSPIADGEEPTCSDGTPGLEAEEGQVCCSAGCDACG
GPLCSTSGLPDYGSSDCCVITIMNSGVMCETTGEAPCILEVGGPVSITPS
PTDVLVASIVSSETSSEILVTCSNGITGVESSNGEACCVAACGQCGGLGC
SSVGLPDYGA
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mRNA from alignment at H-elongata_contig6287:7353..8939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6287.13863.1 ID=mRNA_H-elongata_contig6287.13863.1|Name=mRNA_H-elongata_contig6287.13863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1587bp|location=Sequence derived from alignment at H-elongata_contig6287:7353..8939- (Himanthalia elongata Himel1 dioecious)
GAGGTTGAGCTTTCGACCGCTGCTCCGACATCTGCCCCGACGACCAGTCC
AATCGCTGACGGCGAAGGCAAGCCGAGCACTCGTGTCTCACGTCCCCCGT
CCCCCTCCACCCGTCTGAAAGTAATACCTTAGTTCTCTCGACGGGCACGC
GGTAGAGGGGCCGCGGTCCGTGCATCGTCGCGGGCGGCGTTAACTTCCGT
TCTGCAAGTCCTCAGGAGTGACAGAAAGGAACGCCAGAGCCGTCATCTGT
GCGGCCCCACCATACAGTTTCGTCTGCACCGTCGATAAAATATAAAATGT
ACCACAAGTGGACCTACCTTAACTGTTATCTCGACAGACCTGCACAAATT
CGACTGCGACAATTGTGACAAGCGAATAGTGACGTCATACCACCCTCAGC
CCACTTCCTCTGTACAACTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCTCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCA
CCCCCCCCCCCCCCCNNNNNNNNNNCCCGAGAAAATCGCCTCGTAGAGAT
GTGAAGACCGAGCAACGCGATCTGCCCCCCCCCATCCCCCTTCCTGTTTC
CAGCGCCCCCCCCCCCCCCGCCCCCCTTTCCATCTCTCCTCGTGATCCTC
ATGTGCGCTTACCTTCGCTACAGAGCCCACCTGTAGCGACGGCACTCCAG
GCTTGGAAGCCGAAGAAGGCCAGGTGTGCTGCTCCGCTGGGTGCGATGCA
TGCGGAGGACCTTTATGCTCCACGTCTGGTCTCCCTGACTACGGCTCGTC
CGACTGCTGCGTGATCACCATCATGAACAGCGGCGTGATGTGCGAGACCA
CCGGCGAGGCCCCCTGCATCCTCGAGGGCAAGTGGACTTTTGACAACAGC
CTCAAGAGTTGCCGCGTGGCGTGTTTTGCGCTTCTTCTCCGCAGTCGAGC
CCCGATCGCCGTATCCGAGACGGCAATCATTTATTCGAATGCTAATAGGG
CGAGTATTAACGGTTTACAAAACTTTAAATTCCAGCCGATTTATGTTGAA
ATCGGGCTCTGATTGGACGAAGGCTAGGCATTATTTAGCTTTCGACCAAT
CAGAGCGCGATTTTAATTTAAATCGGCTGGAAATTTTAATTTTTGTATTC
CGATAAGACCCGGCTTTATCTCGAGCGTTTTCGTCACCGCATATTTTAGA
ACGTGCTCCATCGACTTTTGGCTTCGCGTGCTTTATAGGTAAATATATAT
ATATATATAATATTACTATCCTCCCCTGCAGGCTCTGTATGTGCGCGTAC
GAGTGCGTCGTGACTACCTTGTGAACTCGTCGACCTTATCCTTCCCTTCG
CCACGTGCTTTCTTTTCCGTTTGCGCAGTTGGGGGCCCTGTTTCCATTAC
TCCGTCACCCACCGATGTACTAGTAGCTTCTATCGTTTCCTCCGAAACGA
GCTCTGAAATCTTGGTCACATGTAGCAATGGGATTACTGGCGTGGAGTCC
TCTAACGGTGAGGCGTGCTGCGTGGCGGCGTGTGGCCAGTGCGGGGGTTT
GGGCTGCTCCAGCGTTGGCCTCCCGGACTACGGCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig6287:7353..8939-

>mRNA_H-elongata_contig6287.13863.1 ID=mRNA_H-elongata_contig6287.13863.1|Name=mRNA_H-elongata_contig6287.13863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig6287:7353..8939- (Himanthalia elongata Himel1 dioecious)
GAGGTTGAGCTTTCGACCGCTGCTCCGACATCTGCCCCGACGACCAGTCC
AATCGCTGACGGCGAAGGAGGTTGAGCTTTCGACCGCTGCTCCGACATCT
GCCCCGACGACCAGTCCAATCGCTGACGGCGAAGAGCCCACCTGTAGCGA
CGGCACTCCAGGCTTGGAAGCCGAAGAAGGCCAGGTGTGCTGCTCCGCTG
GGTGCGATGCATGCGGAGGACCTTTATGCTCCACGTCTGGTCTCCCTGAC
TACGGCTCGTCCGACTGCTGCGTGATCACCATCATGAACAGCGGCGTGAT
GTGCGAGACCACCGGCGAGGCCCCCTGCATCCTCGAGGAGCCCACCTGTA
GCGACGGCACTCCAGGCTTGGAAGCCGAAGAAGGCCAGGTGTGCTGCTCC
GCTGGGTGCGATGCATGCGGAGGACCTTTATGCTCCACGTCTGGTCTCCC
TGACTACGGCTCGTCCGACTGCTGCGTGATCACCATCATGAACAGCGGCG
TGATGTGCGAGACCACCGGCGAGGCCCCCTGCATCCTCGAGGTTGGGGGC
CCTGTTTCCATTACTCCGTCACCCACCGATGTACTAGTAGCTTCTATCGT
TTCCTCCGAAACGAGCTCTGAAATCTTGGTCACATGTAGCAATGGGATTA
CTGGCGTGGAGTCCTCTAACGGTGAGGCGTGCTGCGTGGCGGCGTGTGGC
CAGTGCGGGGGTTTGGGCTGCTCCAGCGTTGGCCTCCCGGACTACGGCGC
GTTGGGGGCCCTGTTTCCATTACTCCGTCACCCACCGATGTACTAGTAGC
TTCTATCGTTTCCTCCGAAACGAGCTCTGAAATCTTGGTCACATGTAGCA
ATGGGATTACTGGCGTGGAGTCCTCTAACGGTGAGGCGTGCTGCGTGGCG
GCGTGTGGCCAGTGCGGGGGTTTGGGCTGCTCCAGCGTTGGCCTCCCGGA
CTACGGCGCG
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