mRNA_H-elongata_contig6287.13862.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6287.13862.1
Unique NamemRNA_H-elongata_contig6287.13862.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.100e-35
Identity = 85/181 (46.96%), Postives = 116/181 (64.09%), Query Frame = 2 
Query:  128 CSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGE--LD--VTSGSNDIP--TPAPAEL---AYAVPIDASTMAPTESFFQSFPECSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCII 643
            CSNG+ G+ESSNG+ACC   CG CGG GCS  G P   ++DCC +EIV+ G +C+ATG++PC IDG+  LD  V S S  +P  T  P+     +Y+   D  +    +S    F  C+NG+ G+ES+ G+ CC A+CGQCGG+GC      +FG +DCC TEI+D+G  C+E G APC +
Sbjct:  107 CSNGVYGIESSNGKACCALTCGSCGGVGCS--GRPG-GSYDCCESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGGGSYSYSYDFVSWD-GDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCG-----EFG-EDCCITEIMDYGQPCSEIGTAPCYL 277
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.380e-34
Identity = 110/372 (29.57%), Postives = 149/372 (40.05%), Query Frame = 2 
Query:  119 TSMCSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPT-YDAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGSNDIPTPAPAELAYAVPIDASTMAPTESFFQSFPECSN--GISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPD-DCCATEIVDFGMSCAETGAAPCIIGEVAPVSTDLSTPAPVETPVSTIATVGPTSETTAAAVSSXXXXXXXXXXXXXXXXPTDGLTPAPIXXXXXXXXXXVTSLTYPPVPETSSCMDSFMFINCYTEDTNDPFFTKYADGGMTPEMCFETCTAEDALYMGLIGGNECACGND---AQYLLDAHTE---GSCTSTCVGDADQFCGGLLSFDLYVLNEDC 1204
            T  CSNGI G+ES+NG  CC A CG CGG  C+   +    D  DCC ++I+ FG SCS    APC ID     ++G+                                  CSN  G+ G+ S+NG  CC +ECG CGG  C+   L     D DCC ++I   G+ C+++GAAPCI+ +    S D                     ET +  V                                             PV  T  C            D  DPF        +T E C+E C +E +LY  L+ G+ C+CG+     Q  LD++ E   G+C + C G  D+ CGG  +FDLY +   C
Sbjct:   49 TQTCSNGIEGIESTNGGVCCPALCGLCGGAACTKAAVDAGLDDGDCCFSDIIRFGASCSENQMAPCIIDDASKASAGNT---------------------------------CSNANGVEGISSANGDVCCPSECGLCGGRDCTQAALAAGLDDGDCCVSDITKEGVKCSDSGAAPCIVYD----SED---------------------ETGSNQVREAST----------------------------------------PVYITLGCGK--------IGDYEDPFTVSSTVSDLTVEACYELCASESSLYFALVEGDVCSCGDQETFVQTFLDSYEEQTAGTCNTACPGSPDETCGGAQAFDLYRILPTC 314
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.340e-33
Identity = 133/438 (30.37%), Postives = 185/438 (42.24%), Query Frame = 2 
Query:   41 PAPAELAYAVPIDTSTMAPTELSIGGTSMCSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGSNDIPTPAP--------------------AELAYAVPIDASTMAPTESFFQSFPECSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCII-GEVAPVSTDLST-PAPVETP--------VSTIATVGPTSETTAAAVSSXXXXXXXXXXXXXXXXPTD-------GLTPAPIXXXXXXXXXXVTS-----LTYPPVPETSSCMDSFMFINCYTEDTNDP-FFTKYADGGMTPEMCFETCTAEDALYMGLIGGNECACG-NDAQYLLDAHTEGSCTSTCVGDADQFCGGLLSFDLYVLNEDCG*IPTI 1222
            PAP+E+          MAPT+  +    +CS GI G+ESS+G  CC   C QCGG GCSTVGLP Y A  CC ++++  G+SCS +  APC +D          + PTP P                                          S   CSNGI G++S  G  CC+AECG+CGG GC+  G    G D+CC   I ++G  C+ T AAPCI+ GE       L+  P   + P        +S+  T     ET +A  ++                  D       G+   P           V S     L++ P PE         ++ CY +   D   F   +   MT  +C E C  +DA Y G    +EC CG +D +   + H EG C   C GD    CGG  ++ L+  +++ G  PT+
Sbjct:  595 PAPSEMPV--------MAPTDEVV----VCSTGIRGIESSDGAVCCPLGCTQCGGEGCSTVGLPEYGAESCCQSDVLSAGVSCSVSEEAPCVLD----------ETPTPEPNAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDVCSNGIPGIQS--GITCCLAECGECGGPGCAEFG-GGLGQDNCCQGRIEEYGELCSVTLAAPCIVDGEGCLYFAGLACLPHLAKQPLHHVRSGLISSDMTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHGDTGVCDYPCIGDESETCGGVHSFNLYRLSWAPAPEDEE------YVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK-HDNGGKTPTM 1000
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.020e-24
Identity = 75/190 (39.47%), Postives = 101/190 (53.16%), Query Frame = 2 
Query:  128 CSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGSNDIPTPAP-AELAYAVPIDASTMAPTESFFQSFPE----CSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCIIGEVAPVSTDLSTP 682
            CS GI G+ESS+G  CC   C  CGG+GCSTVG+P Y    CCS++I+  G SCS TG APC +    DV      + TPAP AE                            CSNGI G++S  G +CC+A+CG+CGG  C   G    G D+CC ++I ++G  C+    APC++   AP  + ++ P
Sbjct: 1375 CSTGIPGIESSDGAVCCPTGCTMCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVL---ADV------VLTPAPVAEPTXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQS--GVSCCLADCGECGGSDCDEFG-GGLGADNCCESDIEEYGELCSIKLEAPCVVDASAPAPSPVAMP 1552
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.790e-24
Identity = 76/197 (38.58%), Postives = 102/197 (51.78%), Query Frame = 2 
Query:  128 CSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGSNDIPTPAPAELAYAVPIDASTMAPTESFFQSFPE------------CSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCIIGEVAPVSTDLSTP 682
            CSNGI G++S N  ACC+A CG CGG+GC+ +G    +  +CC +EI DFG  CS   +APC +DG           P P+P  +  A                                CSNGI G++S N  ACC+AECG CGG GC+ +G    G D+CC +EI DFG  C+   AAPC++   AP  + ++ P
Sbjct: 1769 CSNGIPGIQSGN--ACCLAECGGCGGSGCAQLGGGLGED-NCCQSEIEDFGELCSVKMAAPCVVDGSA---------PAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDMCSNGIPGIQSGN--ACCLAECGGCGGSGCAQLG-GGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMP 1950
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 7.790e-24
Identity = 81/215 (37.67%), Postives = 101/215 (46.98%), Query Frame = 2 
Query:  125 MCSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGSNDI-------------------PTPAPAELAYAVPIDASTMAPTESFFQSFPE---CSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCIIGE-VAPVSTDLSTPAPVETP 700
            +CS GI G+ESS+G  CC   C QCGG GCSTVGLP Y A  CC  ++   G+SCS +  APC +D  L  T                         PT APA    A+                      CSNG  G++S  G +CC AEC  CGG GC+  G    G D+CCA  I ++G  C+   AAPC + +  AP  T  +T  PV  P
Sbjct:  411 VCSTGIPGIESSDGTVCCPINCTQCGGEGCSTVGLPEYGAESCCELDVQSAGVSCSVSEEAPCVLDDVLSPTETPXXXXXXXXXXXXXXXXXXXTPEPTAAPATEMPAMAXXXXXXXXXXXXXXXXXXXDVCSNGFPGIQS--GDSCCHAECEACGGFGCAEFG-GGLGEDNCCAVRIEEYGELCSTALAAPCYVDDGSAPPPTPATTEMPVVMP 622
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.310e-16
Identity = 72/179 (40.22%), Postives = 91/179 (50.84%), Query Frame = 2 
Query:  122 SMCSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDF--GMSCSATGSAPCAIDGELDVTSGSNDIPTPAPAELAY---AVPIDASTMAPTESFFQSFPECSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCII 643
            S CSNGI GV  S+G  CC+ ACGQCGG GC  +   T  A DCC   I +   G+ C   G APC + G            TP+P   A+   A P+  ST             CSNGI+G +  +G  CC+  CG+CGG GC T+     G D+CC + I+  G+ C E   APCII
Sbjct:  290 STCSNGIPGV--SDGDVCCLEACGQCGGEGCGAI-AGTNGASDCCPDTIKEESGGVFC---GEAPCVMAGF-----------TPSPLNPAFDGTAAPVAPST-------------CSNGIAGYQ--DGAICCLEICGRCGGDGCGTI-PGTGGSDNCCPSTILAAGVVCGE---APCII 432
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.840e-16
Identity = 65/164 (39.63%), Postives = 88/164 (53.66%), Query Frame = 2 
Query:  122 SMCSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDF--GMSCSATGSAPCAIDGELDVTSGSNDIPTPAPAELAYAVPIDASTMAPTESFFQSFPECSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGM 607
            S CSNGI GV  S+G+ CC+ ACGQCGG GC  +   T  A DCC   I +   G+ C   G APC ++G            TP+P  L  A+   A+ +AP+         CSNGI G +  +G  CC+  CG+CGG GC T+     G D+CC ++I+  G+
Sbjct:    4 STCSNGIPGV--SDGEVCCLEACGQCGGVGCGAI-AGTNGASDCCPDTIKEESGGVFC---GEAPCVMEGF-----------TPSP--LNPALDGTAAPVAPST--------CSNGIPGYQ--DGVICCLEICGRCGGDGCGTI-PGTGGSDNCCPSDILAAGV 137
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.520e-14
Identity = 72/187 (38.50%), Postives = 89/187 (47.59%), Query Frame = 2 
Query:  128 CSNGISGVESSNGQACCVAACGQCGGTGCST--VGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGS-------------NDIPTPAPAELAYAVPIDASTMAPTESFFQSFPECSNGISGVESSNGQACCVAECGQCGGMGCSTVGLPDFGPDDCCATEIVDFGMSCAETGAAPCII 643
            CSNG  G+E S   ACCV+ CG CGG+GCS+   GL T D  DCC+  I+  G  CSATG APC +DG+   +  +             ND P P     +Y   +D  T   TE        C+N   G      Q    A CG CGG GCS    P     DCC  +I + G  C+ TG APC +
Sbjct:   21 CSNGFPGIEKSG--ACCVSDCGTCGGSGCSSRESGL-TGD--DCCTKNILKQGAPCSATGHAPCFLDGDSTPSKSTPTESDGFVYEGCFNDKPEP-DRLFSYVTTMDDMT---TEL-------CANECKGYAFFGLQWGREAGCGTCGGTGCSQ--RPGLTDSDCCIGKIEESGPLCSVTGKAPCFV 189
[Close]
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Match: A0A6H5JQM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.860e-13
Identity = 52/132 (39.39%), Postives = 74/132 (56.06%), Query Frame = 2 
Query:  128 CSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTYDAFDCCSTEIVDFGMSCSATGSAPCAIDGE--LDVTSGSNDIPTPAPAEL-------AYAVPIDASTMAPTESFFQSFPECSNGISGVESSNGQA 496
            CSNG+ G+ESSNG ACC   CG CGG GCS     +YD   CC +EIV+ G +C+ATG++PC +DG+  LD    S     P   ++       +Y+   D  +    +S    F  C+N + GVES+ G++
Sbjct:  170 CSNGVYGIESSNGLACCALTCGSCGGVGCSRRPGGSYD---CCESEIVEEGEACAATGASPCYMDGDEVLDPVVPSMSPVVPEETDMPGGFGGSSYSYSYDFVSWD-GDSMDDQFMWCTNSVPGVESAGGES 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6287.13862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FHN7_ECTSI6.100e-3546.96von Willebrand A domain containing protein n=2 Tax... [more]
A0A6H5L879_9PHAE7.380e-3429.57WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJ37_9PHAE2.340e-3330.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ68_ECTSI1.020e-2439.47WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE3.790e-2438.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI7.790e-2437.67EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZM1_ECTSI1.310e-1640.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE2.840e-1639.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRN0_ECTSI1.520e-1438.50Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JQM4_9PHAE1.860e-1339.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6287contigH-elongata_contig6287:13..5021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue6.5e-34
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons7
Model size2037
Cds size1122
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.8889644-UTR-H-elongata_contig6287:12..8261622931011.8889644-UTR-H-elongata_contig6287:12..826Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6287 13..826 -
1691679661.6606638-UTR-H-elongata_contig6287:12..8261691679661.6606638-UTR-H-elongata_contig6287:12..826Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6287 13..826 -
1622931011.9082062-UTR-H-elongata_contig6287:1615..16281622931011.9082062-UTR-H-elongata_contig6287:1615..1628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6287 1616..1628 -
1691679661.674265-UTR-H-elongata_contig6287:1615..16281691679661.674265-UTR-H-elongata_contig6287:1615..1628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6287 1616..1628 -
1622931012.06823-UTR-H-elongata_contig6287:4933..50211622931012.06823-UTR-H-elongata_contig6287:4933..5021Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6287 4934..5021 -
1691679661.7553-UTR-H-elongata_contig6287:4933..50211691679661.7553-UTR-H-elongata_contig6287:4933..5021Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6287 4934..5021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.9300685-CDS-H-elongata_contig6287:1628..18351622931011.9300685-CDS-H-elongata_contig6287:1628..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 1629..1835 -
1691679661.684517-CDS-H-elongata_contig6287:1628..18351691679661.684517-CDS-H-elongata_contig6287:1628..1835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 1629..1835 -
1622931011.9532363-CDS-H-elongata_contig6287:2104..22381622931011.9532363-CDS-H-elongata_contig6287:2104..2238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 2105..2238 -
1691679661.696658-CDS-H-elongata_contig6287:2104..22381691679661.696658-CDS-H-elongata_contig6287:2104..2238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 2105..2238 -
1622931011.9769459-CDS-H-elongata_contig6287:2801..29271622931011.9769459-CDS-H-elongata_contig6287:2801..2927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 2802..2927 -
1691679661.7125094-CDS-H-elongata_contig6287:2801..29271691679661.7125094-CDS-H-elongata_contig6287:2801..2927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 2802..2927 -
1622931012.0017335-CDS-H-elongata_contig6287:3240..33331622931012.0017335-CDS-H-elongata_contig6287:3240..3333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 3241..3333 -
1691679661.7255406-CDS-H-elongata_contig6287:3240..33331691679661.7255406-CDS-H-elongata_contig6287:3240..3333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 3241..3333 -
1622931012.0226467-CDS-H-elongata_contig6287:3881..42051622931012.0226467-CDS-H-elongata_contig6287:3881..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 3882..4205 -
1691679661.7355928-CDS-H-elongata_contig6287:3881..42051691679661.7355928-CDS-H-elongata_contig6287:3881..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 3882..4205 -
1622931012.0449617-CDS-H-elongata_contig6287:4695..49331622931012.0449617-CDS-H-elongata_contig6287:4695..4933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 4696..4933 -
1691679661.746646-CDS-H-elongata_contig6287:4695..49331691679661.746646-CDS-H-elongata_contig6287:4695..4933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6287 4696..4933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6287.13862.1prot_H-elongata_contig6287.13862.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6287 1629..4933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6287.13862.1

>prot_H-elongata_contig6287.13862.1 ID=prot_H-elongata_contig6287.13862.1|Name=mRNA_H-elongata_contig6287.13862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=374bp
MAPTELSIGGTSMCSNGISGVESSNGQACCVAACGQCGGTGCSTVGLPTY
DAFDCCSTEIVDFGMSCSATGSAPCAIDGELDVTSGSNDIPTPAPAELAY
AVPIDASTMAPTESFFQSFPECSNGISGVESSNGQACCVAECGQCGGMGC
STVGLPDFGPDDCCATEIVDFGMSCAETGAAPCIIGEVAPVSTDLSTPAP
VETPVSTIATVGPTSETTAAAVSSADLSTPSPVEMSGSTFPTDGLTPAPI
PTDGLTPAPTVTSLTYPPVPETSSCMDSFMFINCYTEDTNDPFFTKYADG
GMTPEMCFETCTAEDALYMGLIGGNECACGNDAQYLLDAHTEGSCTSTCV
GDADQFCGGLLSFDLYVLNEDCG*
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mRNA from alignment at H-elongata_contig6287:13..5021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6287.13862.1 ID=mRNA_H-elongata_contig6287.13862.1|Name=mRNA_H-elongata_contig6287.13862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5009bp|location=Sequence derived from alignment at H-elongata_contig6287:13..5021- (Himanthalia elongata Himel1 dioecious)
AGAACTCGATGTCACGTCGGGATCGAACGATATTCCCACTCCAGCGCCGG
CCGAGTTGGCATATGCTGTACCCATCGATACATCCACCATGGCCCCGACT
GAGTTGTCTATTGGAGGCACGTCGATGTGTAGCAACGGCATCTCCGGCGT
GGAGTCCTCCAACGGTCAGGCGTGTTGCGTGGCTGCGTGCGGCCAGTGCG
GGGGCACAGGCTGCTCCACCGTAGGCCTCCCCACTTACGATGCGTTCGAC
TGCTGCTCGACTGAAATCGTCGACTTCGGGATGTCGTGCTCCGCGACGGG
TAGTGCGCCTTGCGCCATCGACGGAGGTGGGCGTTGTCGAGGCATTCGGA
CTTTTTAGTCATAAGCAAGCATTCGCGAAGCTAAACCCTACCATCGTGGT
GTGCAGTTCAACCAGCCCGTTTTCTAGGTCCGGTGCTGGTGCATGTTGAT
ACGATATTGAACGCGGGAACAATGGAGTGGTCGGTGTCGAGTCGGTGGAC
GGCAGCGTCTGCTGCGCGCCTGGTTGTATGGTGGTGGATACGGCGAAGAT
GTTTACTCCTCCAGCTCCGTTTTTCTAGAATCTTAGAAGAGCCGCGCTCT
GCCCTAACTGCTCTCGGCGAGTCGATATAATTTAGTGACATATATGTCTC
TTATCTTGGAAATGTGATTTGTCGGAAGCTGTTTCGATGTGTTTCAAATC
ACGCGCGTGCTGAAACACGCGAGGAGACGATGTCCAGGATTGTGGTAAAT
AGGTCGGTTGATGTGTCCTCATCTTCTTCCTCTATCTCACCCTTTCGCGT
CTTGTTACTGTCGCAGAACTCGATGTCACGTCGGGATCGAACGATATTCC
CACTCCAGCGCCGGCCGAGTTGGCATATGCTGTACCCATCGATGCATCCA
CCATGGCCCCGACTGAGTCGTTTTTCCAGAGCTTTCCCGAGTGTAGCAAT
GGCATCTCCGGCGTGGAGTCCTCCAACGGTCAGGCATGCTGCGTGGCTGA
GTGCGGCCAGTGCGGAGGCATGGGATGCTCCACGGTAGGCCTCCCGGATT
TCGGTCCCGACGACTGCTGCGCAACCGAAATCGTGGACTTCGGGATGTCG
TGTGCCGAAACGGGCGCGGCGCCTTGCATCATCGGAGAAGGTGACGAGTA
TTTGGTCGATTTGCGCTCCCAGAAGCACGCGCTCTAGATCATCACCCCTA
TTGCACGATGGAAATATTCGGGCGAGCCACTGATATTTCCGAGTCGGAAT
CATATTACCGTACCGTTGATTGAGCAGGAGCGCATTGTGCCCGTTTCCCT
TCAGAGTCGACGGATTCCTTTAAATAAATGGAGTGACCAATGTCAAGGAG
ATCCACGGCAGCGTGTGTTTAGCCTTTAAGCTTTGTTGGGCGAAGCCTCT
CCTCAGAGCCAACGGAGTTGTGCGCTACCGACGTAAAATGAAAGCCCTCT
TTGGGTGGGCTTGTGCGAGGTGACCTCATGAATCTCCGTGCACGTACGTT
GTTCACAAAAGGGTGAGCAATAGTGATGGCTCGGGTGTGGGGGGGGAGGA
GTTAACCGTGAGGACATGGAAACACCAATTGCACGTGAGCCACGTTGTAC
GCCTGCTAAAACTGTTCTGTCCAGACCGTCTGTCGACGCCGACGCCTTCC
TTGCTCCGTGCGCACATCTTTTTATCTGAAACGCGCAGTCGCCCCGGTGT
CGACCGATTTGTCAACCCCTGCGCCGGTCGAAACGCCTGTTTCTACTATC
GCAACCGTCGGCCCGACGTCGGAAACAACCGGTAAGTGTAACGGCGTCGG
CGTTGTATAATCCCCACAGGCGTTTGGTACTGCTGCCCGCGGATCGAGGG
GAATGGTGCCGGAACATGTTCCCAAGACGATATATGTGATGGTAACCCCC
CTTATTAAATCTTCACAACTGCGCGCTTGGAAGTCGCCGCTAATCAAGAC
ATGTTACCATGATACATCACCAACTGCACGCTAGCCACGATGTTCGCCTC
TCCTAAAACTAGCATGTTCCGATCGTCTGTCGACGTTGCCGCGGCCGTCC
TTGTGCCGCACGTGCGTCCTCTTTCTCTTTTCTCAAACGCGCAGCCGCCG
CGGTGTCGTCGGCCGATTTGTCAACCCCTTCGCCGGTTGAAATGTCTGGT
TCTACTTTCCCAACCGATGGCCTGACGCCGGCACCTATCCCAACCGACGG
CCTGACGCCGGCACCAACTGGTGAGACTTTGAAAAAAGTGTCCCCCACAG
GGTTGTTTGGCGTCTGCTGTCCGGCTGGTTGAGACGAATACTGGCGAAAC
GTCTTACCGATTCTAAATATTTTAAAGCAACTCCCATATTAATCCACCCC
CTCCCTGCTGCAGAACTTGAAATGACCGCGTGCACAAATATATCCTTGTT
GTTTCGTGTATGATGACTGAGATGAGCGACAGAGGCACCCACGTAATATC
TTACGACGAATCTAGCTCGATACGGGCCTGACCGCCCGGAGTTACCCGAT
ATGTCCCCTCCCCCCCCCCTCCCGTTTACACGCGTGTCAATGGGTGACAG
GCAGCTTATCCGAGAAAACGTCACGAGGCTCGGGTGCTCAAAGAGTACCA
TTGAGTAATTTTAGAAGGCATCTTTCGTTACCCAACTTCGTCTCATAATG
TGCTCAGGGACTCAATTCCCGCGCCTGTCCCTAAAGCGTGTGACGTCGCG
AGCACCAAACAAATCAGTAAAACCCCCAATGCTAACACCTAGTTTTTTTT
TTCCCGACCGCGTGATGCTGCTTCGATTTTTAGTTACATCCCTCACCTAC
CCACCTGTCCCAGAGACGAGCAGCTGCATGGATTCCTTCATGTTCATCAA
CTGCTACACGGAAGATACAAATGACCCCTTCTTTACGAAATACGCGGATG
GCGGTATGACCCCTGAGGCGAGCGACTTGCCACGCGCGTGTACCGAAACC
TCTATCACGCATCGCGTATTTTTGCGGCTCTTGCACAGAGAGATTTTCCT
AAAGGACAGAGACTTGCTGTAGTATGACTAGGGTGGTGGAAGGTCAAGAG
AAAAGTCGGCAGCGCGGGGCATATGCCTGCAGGCAGCAAACAATCGGTAA
GGTGGGGAAAGGAAAGGGGTCCATGATGAAACGTTATCTATAAACGAAAC
CTCACGCGGACTTCCACACACTCCATCCACACGCAGATGTGCTTCGAGAC
GTGCACCGCCGAGGATGCCCTCTACATGGGTCTCATCGGCGGCAACGAGT
GCGCTTGCGGTAACGATGCGCAGTACCTGCTCGATGCCCACACCGAAGGT
TCTTGTACGTCTACTTGTGTTGGCGACGCCGACCAGTTCTGTGGAGGACT
CCTCTCGTTTGACCTGTACGTCTTGAACGAGGATTGCGGCTAGATTCCAA
CCATAGGTGAGTGGTCATCTTATAGTGTGATTTTGTTCAAGTAGTTTGTT
TAACATCGTTGCGCCGTGGGAAATGCCGGACGCGCGTGCCTTGTCTTAAA
AAAAACGTGTAGTCCATGCGACATAGGTCTTTTCTCTCACCTCTAAGGAC
GCAAAACGCTTCACATTCGGTAGGATGATGTCTGCTGAACAAAGGATTGT
TGGAAAAAGCCCTAGAGCAACGATGTATACTAATTCGACAGGGAGAGTGT
AGTATACTTCTCCCGTTGTCTTTGTGGCGTGCGTGCGGCGCTTCTGCCTT
AGCGCGGGGATGGAAATCTCTTTGTGGTATTGGAAGTATAGTATAGTATC
GTATTGTCAAGAAGATTATAGTATTGTATAGTATGATACAATATAGTATA
ATGATAACGATAGCGCCCGCTTTCGAACCTGACGATAGTTGGTCCCCTGG
ACTGCACCTCTCACGGTGCTTAAGAAGGTGTGTTGATGTTGGGAGGGTTC
ATATGTCTATTTAAGATCAATGCAACATTCGGTTAACCGGTGTGTCCAAC
TAACCCACTTCATGTCCGGGTTGGCGTCGAAAACGCAAGTATAATGATGA
CTAAAGGATGGTACGATATCATCATCCTTGTGAAACGCAATCTGGCCGGC
GAAACCCCGACGTTTCGCTCCGTCCCGGCATTATTGGAATGCGTAAGTCT
ATGTTCTGTTAGGATACGGTACGTGTTTTAACACAAGCACCCCTATCCCC
CCTCGCTTGTTTTTTTCGGCTTTTTTCGCTTGTTTTTGTCTCGAGTGACG
GAAGTTTCCAACTTGTCACTGGTGCGCTCGCGGGGGACCCACCAATCTTC
CAGCGTGCGTGCGTGTGTGCGTGCGTGCGTGCGTGCATGCGTTTTTGCCC
TTTATTGTAACTATCATTTGTCCAAGCGCTGCTTCGGTTCCGTTTTGGAT
GCATAAAAGGAACAATCTTTCCCAAAAGCCATACACGAGCAATACACTTG
GATCTGCAGAGAGTGGCGAACAGTTTTGATCCTCAAGTTTTTGTTCTTTT
TGTTTTCAATTTGCAATCGTGTGCATATTTCAGATAGAGGTGCTATTATA
CTAAAATTTGTATTTTGTATTTTCATAAAAATATGTTTTTCGGCTACAGT
AAATCAGTCGCAAAAGAGCTGCATAAAAGAACATGTGGTAGTCGAATATA
AGATGGGCGTGTTTTTAGCATTGCGTCGACGATACTGGACTGCCTTGATC
GCGATCGCCATCCGAGGAGATGGCGCACGGGAGGCAAGGCGTAGCGTTGG
CTCAATTTTGCCCATGGTGAAAGAATTTGAGCAACGCAGAAAAAAAACAA
CTTTTCGACCAGGTTTTGGCCGTGTTATTGCGCTCGAGCTTCACTTCCCA
TCCGTAGTAAGCTCGGCTCGAAGGGTTCTAGTAACACACATACGAGGTGA
CTTTGTCCGTAGTTTTCTCCCATGTCAAGCTTAGAAATAGCAACTGACTC
CAGATCGTTGCCTCTGGACCATTTACATGTTCTTTGAAACGCGATCGCTC
GATCGACCCGTGCATTCGGCCCTGACAGTGGTTCTCGTCGGGTACGTACG
TTTTTTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig6287:13..5021-

>mRNA_H-elongata_contig6287.13862.1 ID=mRNA_H-elongata_contig6287.13862.1|Name=mRNA_H-elongata_contig6287.13862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2244bp|location=Sequence derived from alignment at H-elongata_contig6287:13..5021- (Himanthalia elongata Himel1 dioecious)
ATGGCCCCGACTGAGTTGTCTATTGGAGGCACGTCGATGTGTAGCAACGG
CATCTCCGGCGTGGAGTCCTCCAACGGTCAGGCGTGTTGCGTGGCTGCGT
GCGGCCAGTGCGGGGGCACAGGCTGCTCCACCGTAGGCCTCCCCACTTAC
GATGCGTTCGACTGCTGCTCGACTGAAATCGTCGACTTCGGGATGTCGTG
CTCCGCGACGGGTAGTGCGCCTTGCGCCATCGACGGAGATGGCCCCGACT
GAGTTGTCTATTGGAGGCACGTCGATGTGTAGCAACGGCATCTCCGGCGT
GGAGTCCTCCAACGGTCAGGCGTGTTGCGTGGCTGCGTGCGGCCAGTGCG
GGGGCACAGGCTGCTCCACCGTAGGCCTCCCCACTTACGATGCGTTCGAC
TGCTGCTCGACTGAAATCGTCGACTTCGGGATGTCGTGCTCCGCGACGGG
TAGTGCGCCTTGCGCCATCGACGGAGAACTCGATGTCACGTCGGGATCGA
ACGATATTCCCACTCCAGCGCCGGCCGAGTTGGCATATGCTGTACCCATC
GATGCATCCACCATGGCCCCGACTGAGTCGTTTTTCCAGAGCTTTCCCGA
GTGTAGCAATGGCATCTCCGGCGTGGAGTCCTCCAACGGTCAGGCATGCT
GCGTGGCTGAGTGCGGCCAGTGCGGAGGCATGGGATGCTCCACGGTAGGC
CTCCCGGATTTCGGTCCCGACGACTGCTGCGCAACCGAAATCGTGGACTT
CGGGATGTCGTGTGCCGAAACGGGCGCGGCGCCTTGCATCATCGGAGAAG
AACTCGATGTCACGTCGGGATCGAACGATATTCCCACTCCAGCGCCGGCC
GAGTTGGCATATGCTGTACCCATCGATGCATCCACCATGGCCCCGACTGA
GTCGTTTTTCCAGAGCTTTCCCGAGTGTAGCAATGGCATCTCCGGCGTGG
AGTCCTCCAACGGTCAGGCATGCTGCGTGGCTGAGTGCGGCCAGTGCGGA
GGCATGGGATGCTCCACGGTAGGCCTCCCGGATTTCGGTCCCGACGACTG
CTGCGCAACCGAAATCGTGGACTTCGGGATGTCGTGTGCCGAAACGGGCG
CGGCGCCTTGCATCATCGGAGAAGTCGCCCCGGTGTCGACCGATTTGTCA
ACCCCTGCGCCGGTCGAAACGCCTGTTTCTACTATCGCAACCGTCGGCCC
GACGTCGGAAACAACCGTCGCCCCGGTGTCGACCGATTTGTCAACCCCTG
CGCCGGTCGAAACGCCTGTTTCTACTATCGCAACCGTCGGCCCGACGTCG
GAAACAACCGCCGCCGCGGTGTCGTCGGCCGATTTGTCAACCCCTTCGCC
GGTTGAAATGTCTGGTTCTACTTTCCCAACCGATGGCCTGACGCCGGCAC
CTATCCCAACCGACGGCCTGACGCCGGCACCAACTGCCGCCGCGGTGTCG
TCGGCCGATTTGTCAACCCCTTCGCCGGTTGAAATGTCTGGTTCTACTTT
CCCAACCGATGGCCTGACGCCGGCACCTATCCCAACCGACGGCCTGACGC
CGGCACCAACTGTTACATCCCTCACCTACCCACCTGTCCCAGAGACGAGC
AGCTGCATGGATTCCTTCATGTTCATCAACTGCTACACGGAAGATACAAA
TGACCCCTTCTTTACGAAATACGCGGATGGCGGTATGACCCCTGAGTTAC
ATCCCTCACCTACCCACCTGTCCCAGAGACGAGCAGCTGCATGGATTCCT
TCATGTTCATCAACTGCTACACGGAAGATACAAATGACCCCTTCTTTACG
AAATACGCGGATGGCGGTATGACCCCTGAGATGTGCTTCGAGACGTGCAC
CGCCGAGGATGCCCTCTACATGGGTCTCATCGGCGGCAACGAGTGCGCTT
GCGGTAACGATGCGCAGTACCTGCTCGATGCCCACACCGAAGGTTCTTGT
ACGTCTACTTGTGTTGGCGACGCCGACCAGTTCTGTGGAGGACTCCTCTC
GTTTGACCTGTACGTCTTGAACGAGGATTGCGGCTAGATGTGCTTCGAGA
CGTGCACCGCCGAGGATGCCCTCTACATGGGTCTCATCGGCGGCAACGAG
TGCGCTTGCGGTAACGATGCGCAGTACCTGCTCGATGCCCACACCGAAGG
TTCTTGTACGTCTACTTGTGTTGGCGACGCCGACCAGTTCTGTGGAGGAC
TCCTCTCGTTTGACCTGTACGTCTTGAACGAGGATTGCGGCTAG
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