mRNA_H-elongata_contig62864.13861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62864.13861.1
Unique NamemRNA_H-elongata_contig62864.13861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62864.13861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62864contigH-elongata_contig62864:76..3229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2697
Cds size2127
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62864.13861.1prot_H-elongata_contig62864.13861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62864 267..2393 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.7605965-UTR-H-elongata_contig62864:75..2661622931011.7605965-UTR-H-elongata_contig62864:75..266Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62864 76..266 -
1691679661.6193027-UTR-H-elongata_contig62864:75..2661691679661.6193027-UTR-H-elongata_contig62864:75..266Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62864 76..266 -
1622931011.810338-UTR-H-elongata_contig62864:2393..24591622931011.810338-UTR-H-elongata_contig62864:2393..2459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62864 2394..2459 -
1691679661.639355-UTR-H-elongata_contig62864:2393..24591691679661.639355-UTR-H-elongata_contig62864:2393..2459Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62864 2394..2459 -
1622931011.8347213-UTR-H-elongata_contig62864:2916..32291622931011.8347213-UTR-H-elongata_contig62864:2916..3229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62864 2917..3229 -
1691679661.649558-UTR-H-elongata_contig62864:2916..32291691679661.649558-UTR-H-elongata_contig62864:2916..3229Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62864 2917..3229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.783212-CDS-H-elongata_contig62864:266..23931622931011.783212-CDS-H-elongata_contig62864:266..2393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62864 267..2393 -
1691679661.6293085-CDS-H-elongata_contig62864:266..23931691679661.6293085-CDS-H-elongata_contig62864:266..2393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62864 267..2393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62864.13861.1

>prot_H-elongata_contig62864.13861.1 ID=prot_H-elongata_contig62864.13861.1|Name=mRNA_H-elongata_contig62864.13861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=709bp
MINVSNKRCAANNCSKIPSYGKAGSTKKEYCAEHSSEGMINISKKNCAGY
GCSKRASYGTVGSTKREYCAEHALGGMVNVFNKSCAGDGCSKQARYGKAG
STKREYCAEHALKGMINLIKSEMCAGDGCFKQASYGKAGSKKREYCAKHA
LEGMINVIKGIMCAGDGCFKQASYGKAGSTKREYCAEHALEGMINVSNKR
CVANNCSKIPSYGKAGSTKKEYCAEHSPEGMINISKKICAGYGCSKRASY
GTAGSTKREYCAEHALGGMVNVFNKRCVDDGCSMLANYGKACSKKPEFCA
EHALEGMVNVTMKRCAADGCLKQTSYGMAGSTKREYCAEHALEGMINVSN
KRCVGNNCSKMPSYGMAGSTKKEYCAEHSLEGMVNVPKKTCAIYRCSKRA
SYGTAGSKKRKYCAEHALGGMANLSVKSCAADGCSKQARYGKAGSTKREY
CAEHTLWGMVNLSLKSCAADGCFKTANYGTAGSTKREYCAEHALEGMVNV
SRKKCAGNGCSNIPSDEKAGSTKTEYCAKHALKGMVNVSMKRCAANRCPK
QASYGTAGSTKREYCAKHALEGMANVSNKRCADDGCSTLANYGKACSKNP
EFCAEHALKGMVNISKNNCAFGRCFKLPSYEKAESTKGEYCEKHAVECIV
CIVPHNSPSSRKRVSKVSTSPVSVSKRYITDHKVRSPFSETALGAVSVKS
EISATKSK*
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mRNA from alignment at H-elongata_contig62864:76..3229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62864.13861.1 ID=mRNA_H-elongata_contig62864.13861.1|Name=mRNA_H-elongata_contig62864.13861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3154bp|location=Sequence derived from alignment at H-elongata_contig62864:76..3229- (Himanthalia elongata Himel1 dioecious)
AGGTACATCGACTTTTTCCCGAAGATGTATGGGCGGTGGACGCTATAAGG
TATCGAACTGCTCACTAACTAACTCATAGATGTTCTAAGCTGGCGAGTTA
CAGGAAGGCTGGAAGCAAGAACTGGGACTACTGCGCTGAGCACTCATTGG
AGGGGATGGTTTCACACAAAAGTTGTGCCGGTGATGGATGTTCTAAGCAA
GCGAGGTACGGGAAGGCCGGAAGCACGGAGCGAGAGTACTGCGCTGAGCA
TGCCTTGGAAGGGATGATCAACCTCATTAAGAGAAAAATGTGTGCCGGTG
ATGGATGTTTTAAGCAAGCGAGCTACGGGACGGCCGGAAGCACGAAACGG
GACTACTGCGCCGAACATGCCTTGGAGGGTATGGCCAATGTTTATAGCAA
AAAGTGCTCAGGTAATGGGTGTTCAAAGGTACCGAGCTACGGAAAGGTTG
GCAGCACGAAACGGGAGTACTGCGCTGAGCACTCATCGGAGGGGATGATC
ATTGTTTCGAAAAGAAACTGTGTCGGTTATGGATGTTCTAAGAGAGCGAG
CTACGGGACGGCCGGAAGCACGAAACGGGAGTACTGCGCCGAACATGCCT
TGGGGAGAATGGTCAATGTTTCCAGCAAAAAGTGTGCCGATGATGGATGT
TCTACGCGAGCGATCTACGGGAAGGCTGGCAGCAAGAAACCGGAGTTCTG
CGCTAAGCATGCCTTGGAGGGGATGGTCAATGTTACCATCAAATATTGTG
TCGCTGGTGGATGTTTTAAGCAAGCGAGGTACGGAAAGGCTGGCAGCACG
AAAAGGGAATACTGCGCTGAACATGCCTTGGAGGGGATGATCAATGTTTC
CAATAAAAGGTGTGCCGCTAATAATTGTTCGAAGATACCGAGCTACGGAA
AGGCTGGCAGCACGAAAAAGGAATACTGCGCTGAGCACTCATCGGAGGGG
ATGATCAATATTTCGAAAAAAAACTGTGCCGGTTATGGATGTTCTAAGAG
AGCAAGCTACGGGACGGTCGGAAGCACGAAACGGGAGTACTGCGCCGAAC
ATGCCTTGGGAGGAATGGTCAATGTTTTCAACAAAAGTTGTGCCGGTGAT
GGATGTTCTAAGCAAGCGAGGTACGGGAAGGCCGGAAGCACGAAGCGAGA
GTACTGCGCTGAGCATGCCTTGAAGGGCATGATTAACCTCATTAAGAGTG
AAATGTGTGCCGGTGATGGATGTTTTAAACAAGCGAGCTACGGGAAGGCC
GGAAGCAAGAAACGGGAGTACTGCGCTAAGCATGCCTTGGAGGGGATGAT
TAACGTCATTAAGGGAATAATGTGTGCCGGTGATGGATGTTTTAAACAAG
CGAGCTACGGAAAGGCTGGGAGCACGAAAAGGGAATACTGCGCTGAACAT
GCCTTGGAGGGGATGATCAATGTTTCCAATAAAAGGTGTGTCGCTAATAA
TTGTTCTAAGATACCGAGCTACGGAAAGGCTGGCAGCACAAAAAAGGAAT
ACTGCGCTGAGCATTCACCGGAGGGGATGATCAATATTTCGAAAAAAATT
TGTGCCGGTTATGGATGTTCTAAGAGAGCAAGCTACGGGACGGCCGGAAG
CACGAAAAGGGAGTACTGCGCCGAACATGCCTTGGGAGGAATGGTCAATG
TTTTCAACAAAAGGTGTGTCGATGATGGATGCTCTATGCTAGCGAACTAC
GGGAAGGCTTGCAGCAAAAAACCTGAGTTCTGCGCTGAGCATGCCTTGGA
GGGGATGGTCAATGTTACCATGAAACGTTGTGCCGCTGATGGATGTCTTA
AGCAAACGAGCTACGGGATGGCCGGAAGTACAAAACGGGAGTACTGCGCC
GAACATGCCTTGGAGGGGATGATCAATGTTTCCAATAAAAGGTGTGTCGG
TAATAATTGTTCTAAGATGCCGAGCTACGGAATGGCTGGCAGCACGAAAA
AAGAATACTGCGCTGAGCACTCATTGGAGGGGATGGTGAATGTTCCGAAA
AAAACCTGTGCCATTTATAGATGTTCTAAGAGAGCAAGCTACGGGACGGC
CGGAAGCAAGAAACGGAAGTACTGCGCCGAACATGCCTTGGGGGGAATGG
CCAATCTTTCCGTCAAAAGTTGTGCCGCTGATGGATGTTCTAAGCAAGCG
AGGTACGGGAAGGCCGGAAGCACGAAGCGAGAGTACTGCGCCGAACATAC
CTTGTGGGGAATGGTCAATCTTTCCCTCAAAAGTTGTGCCGCCGATGGAT
GTTTTAAGACCGCGAACTACGGGACGGCCGGAAGCACGAAACGGGAGTAC
TGCGCCGAACATGCCTTGGAGGGGATGGTCAATGTTTCTAGGAAAAAGTG
CGCAGGTAATGGATGTTCAAACATACCGAGCGACGAAAAGGCTGGCAGCA
CGAAAACGGAATACTGCGCTAAACATGCCTTGAAAGGGATGGTCAATGTT
TCAATGAAAAGGTGTGCCGCTAATAGATGTCCTAAGCAAGCGAGCTACGG
GACGGCCGGAAGCACGAAACGAGAGTACTGCGCTAAACATGCCTTGGAGG
GGATGGCCAATGTTTCCAACAAAAGATGTGCCGATGATGGATGTTCTACG
CTAGCGAACTACGGGAAGGCTTGTAGCAAAAACCCGGAGTTCTGCGCTGA
GCATGCCTTGAAGGGGATGGTCAATATTTCTAAAAACAATTGTGCCTTTG
GTCGTTGTTTTAAGCTACCGAGCTACGAGAAGGCCGAAAGTACGAAAGGA
GAGTACTGCGAAAAACATGCTGTGGAGTGTATAGTGTGTATCGTCCCGCA
CAACAGTCCCAGTTCCAGGAAGCGTGTGTCGAAGGTCTCTACATCGCCAG
TATCCGTTTCGAAAAGGTATATAACCGATCATAAGGTTAGATCCCCCTTT
TCCGAGACTGCATTAGGTGCTGTTTCGGTGAAGTCAGAGATATCAGCAAC
TAAATCAAAGTAGGTATACTTTGTAAGCGATTCTAGGGGAAGGTCTACTG
GCGAAGGGGAGCGGGGACATGGCGCTCCGTGAATTTCATGTCTTAAATAT
TCATTGAGCATTTAACCAAATATGATGACCACACATAGTTCTTTAGAGCG
GAGAAACCAAACTATTTTACCACAGTTTTGTCGCGTAGGGTCCGGAGAAA
GAGC
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Coding sequence (CDS) from alignment at H-elongata_contig62864:76..3229-

>mRNA_H-elongata_contig62864.13861.1 ID=mRNA_H-elongata_contig62864.13861.1|Name=mRNA_H-elongata_contig62864.13861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4254bp|location=Sequence derived from alignment at H-elongata_contig62864:76..3229- (Himanthalia elongata Himel1 dioecious)
ATGATCAATGTTTCCAATAAAAGGTGTGCCGCTAATAATTGTTCGAAGAT
ACCGAGCTACGGAAAGGCTGGCAGCACGAAAAAGGAATACTGCGCTGAGC
ACTCATCGGAGGGGATGATCAATATTTCGAAAAAAAACTGTGCCGGTTAT
GGATGTTCTAAGAGAGCAAGCTACGGGACGGTCGGAAGCACGAAACGGGA
GTACTGCGCCGAACATGCCTTGGGAGGAATGGTCAATGTTTTCAACAAAA
GTTGTGCCGGTGATGGATGTTCTAAGCAAGCGAGGTACGGGAAGGCCGGA
AGCACGAAGCGAGAGTACTGCGCTGAGCATGCCTTGAAGGGCATGATTAA
CCTCATTAAGAGTGAAATGTGTGCCGGTGATGGATGTTTTAAACAAGCGA
GCTACGGGAAGGCCGGAAGCAAGAAACGGGAGTACTGCGCTAAGCATGCC
TTGGAGGGGATGATTAACGTCATTAAGGGAATAATGTGTGCCGGTGATGG
ATGTTTTAAACAAGCGAGCTACGGAAAGGCTGGGAGCACGAAAAGGGAAT
ACTGCGCTGAACATGCCTTGGAGGGGATGATCAATGTTTCCAATAAAAGG
TGTGTCGCTAATAATTGTTCTAAGATACCGAGCTACGGAAAGGCTGGCAG
CACAAAAAAGGAATACTGCGCTGAGCATTCACCGGAGGGGATGATCAATA
TTTCGAAAAAAATTTGTGCCGGTTATGGATGTTCTAAGAGAGCAAGCTAC
GGGACGGCCGGAAGCACGAAAAGGGAGTACTGCGCCGAACATGCCTTGGG
AGGAATGGTCAATGTTTTCAACAAAAGGTGTGTCGATGATGGATGCTCTA
TGCTAGCGAACTACGGGAAGGCTTGCAGCAAAAAACCTGAGTTCTGCGCT
GAGCATGCCTTGGAGGGGATGGTCAATGTTACCATGAAACGTTGTGCCGC
TGATGGATGTCTTAAGCAAACGAGCTACGGGATGGCCGGAAGTACAAAAC
GGGAGTACTGCGCCGAACATGCCTTGGAGGGGATGATCAATGTTTCCAAT
AAAAGGTGTGTCGGTAATAATTGTTCTAAGATGCCGAGCTACGGAATGGC
TGGCAGCACGAAAAAAGAATACTGCGCTGAGCACTCATTGGAGGGGATGG
TGAATGTTCCGAAAAAAACCTGTGCCATTTATAGATGTTCTAAGAGAGCA
AGCTACGGGACGGCCGGAAGCAAGAAACGGAAGTACTGCGCCGAACATGC
CTTGGGGGGAATGGCCAATCTTTCCGTCAAAAGTTGTGCCGCTGATGGAT
GTTCTAAGCAAGCGAGGTACGGGAAGGCCGGAAGCACGAAGCGAGAGTAC
TGCGCCGAACATACCTTGTGGGGAATGGTCAATCTTTCCCTCAAAAGTTG
TGCCGCCGATGGATGTTTTAAGACCGCGAACTACGGGACGGCCGGAAGCA
CGAAACGGGAGTACTGCGCCGAACATGCCTTGGAGGGGATGGTCAATGTT
TCTAGGAAAAAGTGCGCAGGTAATGGATGTTCAAACATACCGAGCGACGA
AAAGGCTGGCAGCACGAAAACGGAATACTGCGCTAAACATGCCTTGAAAG
GGATGGTCAATGTTTCAATGAAAAGGTGTGCCGCTAATAGATGTCCTAAG
CAAGCGAGCTACGGGACGGCCGGAAGCACGAAACGAGAGTACTGCGCTAA
ACATGCCTTGGAGGGGATGGCCAATGTTTCCAACAAAAGATGTGCCGATG
ATGGATGTTCTACGCTAGCGAACTACGGGAAGGCTTGTAGCAAAAACCCG
GAGTTCTGCGCTGAGCATGCCTTGAAGGGGATGGTCAATATTTCTAAAAA
CAATTGTGCCTTTGGTCGTTGTTTTAAGCTACCGAGCTACGAGAAGGCCG
AAAGTACGAAAGGAGAGTACTGCGAAAAACATGCTGTGGAGTGTATAGTG
TGTATCGTCCCGCACAACAGTCCCAGTTCCAGGAAGCGTGTGTCGAAGGT
CTCTACATCGCCAGTATCCGTTTCGAAAAGGTATATAACCGATCATAAGG
TTAGATCCCCCTTTTCCGAGACTGCATTAGGTGCTGTTTCGGTGAAGTCA
GAGATATCAGCAACTAAATCAAAGTAGATGATCAATGTTTCCAATAAAAG
GTGTGCCGCTAATAATTGTTCGAAGATACCGAGCTACGGAAAGGCTGGCA
GCACGAAAAAGGAATACTGCGCTGAGCACTCATCGGAGGGGATGATCAAT
ATTTCGAAAAAAAACTGTGCCGGTTATGGATGTTCTAAGAGAGCAAGCTA
CGGGACGGTCGGAAGCACGAAACGGGAGTACTGCGCCGAACATGCCTTGG
GAGGAATGGTCAATGTTTTCAACAAAAGTTGTGCCGGTGATGGATGTTCT
AAGCAAGCGAGGTACGGGAAGGCCGGAAGCACGAAGCGAGAGTACTGCGC
TGAGCATGCCTTGAAGGGCATGATTAACCTCATTAAGAGTGAAATGTGTG
CCGGTGATGGATGTTTTAAACAAGCGAGCTACGGGAAGGCCGGAAGCAAG
AAACGGGAGTACTGCGCTAAGCATGCCTTGGAGGGGATGATTAACGTCAT
TAAGGGAATAATGTGTGCCGGTGATGGATGTTTTAAACAAGCGAGCTACG
GAAAGGCTGGGAGCACGAAAAGGGAATACTGCGCTGAACATGCCTTGGAG
GGGATGATCAATGTTTCCAATAAAAGGTGTGTCGCTAATAATTGTTCTAA
GATACCGAGCTACGGAAAGGCTGGCAGCACAAAAAAGGAATACTGCGCTG
AGCATTCACCGGAGGGGATGATCAATATTTCGAAAAAAATTTGTGCCGGT
TATGGATGTTCTAAGAGAGCAAGCTACGGGACGGCCGGAAGCACGAAAAG
GGAGTACTGCGCCGAACATGCCTTGGGAGGAATGGTCAATGTTTTCAACA
AAAGGTGTGTCGATGATGGATGCTCTATGCTAGCGAACTACGGGAAGGCT
TGCAGCAAAAAACCTGAGTTCTGCGCTGAGCATGCCTTGGAGGGGATGGT
CAATGTTACCATGAAACGTTGTGCCGCTGATGGATGTCTTAAGCAAACGA
GCTACGGGATGGCCGGAAGTACAAAACGGGAGTACTGCGCCGAACATGCC
TTGGAGGGGATGATCAATGTTTCCAATAAAAGGTGTGTCGGTAATAATTG
TTCTAAGATGCCGAGCTACGGAATGGCTGGCAGCACGAAAAAAGAATACT
GCGCTGAGCACTCATTGGAGGGGATGGTGAATGTTCCGAAAAAAACCTGT
GCCATTTATAGATGTTCTAAGAGAGCAAGCTACGGGACGGCCGGAAGCAA
GAAACGGAAGTACTGCGCCGAACATGCCTTGGGGGGAATGGCCAATCTTT
CCGTCAAAAGTTGTGCCGCTGATGGATGTTCTAAGCAAGCGAGGTACGGG
AAGGCCGGAAGCACGAAGCGAGAGTACTGCGCCGAACATACCTTGTGGGG
AATGGTCAATCTTTCCCTCAAAAGTTGTGCCGCCGATGGATGTTTTAAGA
CCGCGAACTACGGGACGGCCGGAAGCACGAAACGGGAGTACTGCGCCGAA
CATGCCTTGGAGGGGATGGTCAATGTTTCTAGGAAAAAGTGCGCAGGTAA
TGGATGTTCAAACATACCGAGCGACGAAAAGGCTGGCAGCACGAAAACGG
AATACTGCGCTAAACATGCCTTGAAAGGGATGGTCAATGTTTCAATGAAA
AGGTGTGCCGCTAATAGATGTCCTAAGCAAGCGAGCTACGGGACGGCCGG
AAGCACGAAACGAGAGTACTGCGCTAAACATGCCTTGGAGGGGATGGCCA
ATGTTTCCAACAAAAGATGTGCCGATGATGGATGTTCTACGCTAGCGAAC
TACGGGAAGGCTTGTAGCAAAAACCCGGAGTTCTGCGCTGAGCATGCCTT
GAAGGGGATGGTCAATATTTCTAAAAACAATTGTGCCTTTGGTCGTTGTT
TTAAGCTACCGAGCTACGAGAAGGCCGAAAGTACGAAAGGAGAGTACTGC
GAAAAACATGCTGTGGAGTGTATAGTGTGTATCGTCCCGCACAACAGTCC
CAGTTCCAGGAAGCGTGTGTCGAAGGTCTCTACATCGCCAGTATCCGTTT
CGAAAAGGTATATAACCGATCATAAGGTTAGATCCCCCTTTTCCGAGACT
GCATTAGGTGCTGTTTCGGTGAAGTCAGAGATATCAGCAACTAAATCAAA
GTAG
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