mRNA_H-elongata_contig62835.13859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62835.13859.1
Unique NamemRNA_H-elongata_contig62835.13859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62835.13859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62835contigH-elongata_contig62835:1662..2443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002800.1
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931011.6064112-CDS-H-elongata_contig62835:1661..18111622931011.6064112-CDS-H-elongata_contig62835:1661..1811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62835 1662..1811 -
1691679661.5769029-CDS-H-elongata_contig62835:1661..18111691679661.5769029-CDS-H-elongata_contig62835:1661..1811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62835 1662..1811 -
1622931011.6295788-CDS-H-elongata_contig62835:2266..24431622931011.6295788-CDS-H-elongata_contig62835:2266..2443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62835 2267..2443 -
1691679661.586904-CDS-H-elongata_contig62835:2266..24431691679661.586904-CDS-H-elongata_contig62835:2266..2443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62835 2267..2443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62835.13859.1prot_H-elongata_contig62835.13859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62835 1662..2443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62835.13859.1

>prot_H-elongata_contig62835.13859.1 ID=prot_H-elongata_contig62835.13859.1|Name=mRNA_H-elongata_contig62835.13859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
PPPPPPPPPPRASHAAFGAAEGAAQAYQTPPPPPTQQMQQQHPLARPIAE
RIAAMGPQELEAMRLLPDARVQYPFVFDGHPGFGAFRNMLTSLVMPRLQQ
GAGDSAGK*
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mRNA from alignment at H-elongata_contig62835:1662..2443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62835.13859.1 ID=mRNA_H-elongata_contig62835.13859.1|Name=mRNA_H-elongata_contig62835.13859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=782bp|location=Sequence derived from alignment at H-elongata_contig62835:1662..2443- (Himanthalia elongata Himel1 dioecious)
CCTCCGCCGCCCCCACCGCCGCCACCGCCAAGAGCTTCGCACGCTGCATT
TGGCGCAGCAGAAGGCGCCGCACAGGCTTATCAGACGCCGCCCCCGCCGC
CGACGCAGCAGATGCAACAGCAGCACCCCCTGGCGAGGCCAATAGCGGAG
CGTATTGCTGCCATGGGCCCTCAAGAGGTAATACGCCCCTCGCCCTTGTG
TGCCCTCGGCGTGTCCGGCGCGCCTGATGGTTGCCAAGAGCTGAGCCGAG
CTGGTCGATGATAGGGTTTCGTCAATGGCGCGCTTGAATCGAGTTTGGAT
CTGTTTTTGAACGCCCTCAGCAACAAATATCCATCCCAAGTGGGAGGGCC
GTAACGGTGATAAATATTTTTTCTTTGGGTTAAACTCTCGCTTAGAAATT
ACCTAAGGGTCTGCTGGGACCAAGCGATGTCAATAAAGTTATAGGTGTTC
CATTGTTGTCCCACGGCGTTTGTGTTATCGGTACGATCTCACTTGTACAT
TATCATATCCGGAAAACATTAACAAGGTTAAGTCAACCCCTATCGTTTCA
ATTCGTGCTCTGCTTGCCCTTCCGTCGTGTGATTTCACGTCCGGCTTCGT
TCCGTTCAACGTGGATGGGTGGACATGATAAGCTGGAGGCCATGCGCCTT
TTGCCCGATGCCCGGGTGCAGTACCCCTTCGTCTTCGATGGACACCCCGG
CTTCGGAGCTTTTCGCAACATGCTGACGAGCCTTGTCATGCCGAGACTGC
AACAGGGGGCTGGCGACAGCGCGGGGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62835:1662..2443-

>mRNA_H-elongata_contig62835.13859.1 ID=mRNA_H-elongata_contig62835.13859.1|Name=mRNA_H-elongata_contig62835.13859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig62835:1662..2443- (Himanthalia elongata Himel1 dioecious)
CCTCCGCCGCCCCCACCGCCGCCACCGCCAAGAGCTTCGCACGCTGCATT
TGGCGCAGCAGAAGGCGCCGCACAGGCTTATCAGACGCCGCCCCCGCCGC
CGACGCAGCAGATGCAACAGCAGCACCCCCTGGCGAGGCCAATAGCGGAG
CGTATTGCTGCCATGGGCCCTCAAGAGCCTCCGCCGCCCCCACCGCCGCC
ACCGCCAAGAGCTTCGCACGCTGCATTTGGCGCAGCAGAAGGCGCCGCAC
AGGCTTATCAGACGCCGCCCCCGCCGCCGACGCAGCAGATGCAACAGCAG
CACCCCCTGGCGAGGCCAATAGCGGAGCGTATTGCTGCCATGGGCCCTCA
AGAGCTGGAGGCCATGCGCCTTTTGCCCGATGCCCGGGTGCAGTACCCCT
TCGTCTTCGATGGACACCCCGGCTTCGGAGCTTTTCGCAACATGCTGACG
AGCCTTGTCATGCCGAGACTGCAACAGGGGGCTGGCGACAGCGCGGGGAA
GTGACTGGAGGCCATGCGCCTTTTGCCCGATGCCCGGGTGCAGTACCCCT
TCGTCTTCGATGGACACCCCGGCTTCGGAGCTTTTCGCAACATGCTGACG
AGCCTTGTCATGCCGAGACTGCAACAGGGGGCTGGCGACAGCGCGGGGAA
GTGA
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